BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV243132.1|CV243132 WS02516.B21.1_P20 PT-MB-N-A-15 Popul... 44 0.005
gb|CV255174.1|CV255174 WS02412.B21_E11 PTxD-ICC-N-A-14 Popu... 44 0.005
gb|CV266016.1|CV266016 WS02028.B21_O06 PTxN-IB-N-A-11 Popul... 44 0.005
gb|CX655014.1|CX655014 PO01003G09 Poplar SC cDNA library Po... 44 0.005
gb|DT524861.1|DT524861 WS02043.C21_M16 PTxN-IB-N-A-11 Popul... 44 0.005
>gb|CV243132.1|CV243132 WS02516.B21.1_P20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02516_P20 3', mRNA sequence
Length = 817
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 aaggcggtggaggcaacggcgg 174
||||||||||||||||||||||
Sbjct: 208 aaggcggtggaggcaacggcgg 229
>gb|CV255174.1|CV255174 WS02412.B21_E11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_E11 3', mRNA sequence
Length = 694
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 aaggcggtggaggcaacggcgg 174
||||||||||||||||||||||
Sbjct: 210 aaggcggtggaggcaacggcgg 231
>gb|CV266016.1|CV266016 WS02028.B21_O06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_O06 3', mRNA sequence
Length = 771
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 aaggcggtggaggcaacggcgg 174
||||||||||||||||||||||
Sbjct: 260 aaggcggtggaggcaacggcgg 281
>gb|CX655014.1|CX655014 PO01003G09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003G09 5', mRNA sequence
Length = 758
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 153 aaggcggtggaggcaacggcgg 174
||||||||||||||||||||||
Sbjct: 605 aaggcggtggaggcaacggcgg 584
>gb|DT524861.1|DT524861 WS02043.C21_M16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02043_M16 3', mRNA sequence
Length = 788
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 aaggcggtggaggcaacggcgg 174
||||||||||||||||||||||
Sbjct: 243 aaggcggtggaggcaacggcgg 264
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,796
Number of Sequences: 369679
Number of extensions: 27796
Number of successful extensions: 6775
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6770
Number of HSP's gapped (non-prelim): 5
length of query: 542
length of database: 203,408,664
effective HSP length: 19
effective length of query: 523
effective length of database: 196,384,763
effective search space: 102709231049
effective search space used: 102709231049
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)