BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU869350.1|BU869350 M129A11 Populus flower cDNA library ... 94 7e-018
gb|CA821610.1|CA821610 RSH05B05 two-month-old roots from cl... 94 7e-018
gb|CA825445.1|CA825445 R59A04 two-month-old roots from clon... 94 7e-018
gb|CV236681.1|CV236681 WS01225.B21.1_A02 PT-GT-FL-A-3 Popul... 94 7e-018
gb|CX178987.1|CX178987 G08_45-7_14.ab1 leaf inoculated with... 94 7e-018
gb|DT472071.1|DT472071 WS01225.BR.1_A02 PT-GT-FL-A-3 Populu... 94 7e-018
gb|DT481569.1|DT481569 WS02532.BR_E03 PT-MB-N-A-15 Populus ... 94 7e-018
gb|DT493062.1|DT493062 WS02553.C21_E10 PT-MB-N-A-15 Populus... 94 7e-018
gb|DT495513.1|DT495513 WS01120.BR_L03 PT-P-FL-A-2 Populus t... 94 7e-018
gb|CF231483.1|CF231483 PtaC0022A11A1101 Poplar cDNA library... 88 5e-016
gb|BU822258.1|BU822258 UB34DPE10 Populus tremula cambium cD... 86 2e-015
gb|BU833423.1|BU833423 T047G10 Populus apical shoot cDNA li... 78 4e-013
gb|BU828727.1|BU828727 K027P57P Populus apical shoot cDNA l... 72 3e-011
gb|CK109309.1|CK109309 M105C04 Populus female catkins cDNA ... 72 3e-011
gb|DT495081.1|DT495081 WS0112.BR_F08 PT-P-FL-A-2 Populus tr... 70 1e-010
gb|BU862230.1|BU862230 S013A10 Populus imbibed seed cDNA li... 62 3e-008
gb|CK099666.1|CK099666 A080P06.5pR Hybrid aspen plasmid lib... 62 3e-008
gb|DT495044.1|DT495044 WS0112.BR_D08 PT-P-FL-A-2 Populus tr... 62 3e-008
gb|CV264107.1|CV264107 WS02023.B21_K06 PTxN-IB-N-A-11 Popul... 58 4e-007
gb|CV248422.1|CV248422 WS01120.B21_L03 PT-P-FL-A-2 Populus ... 52 2e-005
gb|DT511217.1|DT511217 WS02429.BR_N22 PTxD-ICC-N-A-14 Popul... 50 1e-004
gb|DT515911.1|DT515911 WS02429.B21.1_N22 PTxD-ICC-N-A-14 Po... 50 1e-004
gb|AI165261.1|AI165261 A080P06U Hybrid aspen plasmid librar... 48 4e-004
gb|BU889952.1|BU889952 P028D03 Populus petioles cDNA librar... 48 4e-004
>gb|BU869350.1|BU869350 M129A11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 557
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 279 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 220
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 219 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 160
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 159 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 100
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 99 ataatcatctt 89
>gb|CA821610.1|CA821610 RSH05B05 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 614
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 283 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 224
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 223 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 164
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 163 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 104
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 103 ataatcatctt 93
>gb|CA825445.1|CA825445 R59A04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 588
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 283 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 224
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 223 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 164
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 163 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 104
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 103 ataatcatctt 93
>gb|CV236681.1|CV236681 WS01225.B21.1_A02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_A02 3', mRNA sequence
Length = 638
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Plus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 316 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 375
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 376 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 435
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 436 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 495
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 496 ataatcatctt 506
>gb|CX178987.1|CX178987 G08_45-7_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 430
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 251 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 192
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 191 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 132
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 131 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 72
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 71 ataatcatctt 61
>gb|DT472071.1|DT472071 WS01225.BR.1_A02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_A02 5', mRNA sequence
Length = 607
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 292 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 233
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 232 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 173
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 172 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 113
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 112 ataatcatctt 102
>gb|DT481569.1|DT481569 WS02532.BR_E03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_E03 5', mRNA sequence
Length = 825
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Plus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 277 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 336
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 337 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 396
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 397 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 456
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 457 ataatcatctt 467
>gb|DT493062.1|DT493062 WS02553.C21_E10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_E10 3', mRNA sequence
Length = 588
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Plus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 310 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 369
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 370 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 429
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 430 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 489
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 490 ataatcatctt 500
>gb|DT495513.1|DT495513 WS01120.BR_L03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_L03 5', mRNA sequence
Length = 719
Score = 93.7 bits (47), Expect = 7e-018
Identities = 155/191 (81%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 280 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 221
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 220 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 161
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 160 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 101
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 100 ataatcatctt 90
>gb|CF231483.1|CF231483 PtaC0022A11A1101 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 542
Score = 87.7 bits (44), Expect = 5e-016
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||||||||| ||||||||||||| || |||||
Sbjct: 287 ttgtagttcagaagcttctcaataaggtcaacatgagtcatgagcattcttctacagcaa 228
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| | ||| || ||||| | ||| || || ||||| ||
Sbjct: 227 taccgaaccaaccccaacgcatcaanagcgtctccttcagtgtaatcagcttggagaaga 168
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 167 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 108
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 107 ataatcatctt 97
>gb|BU822258.1|BU822258 UB34DPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 454
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 275 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 216
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 215 taccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatcagcttggagaaga 156
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || | |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 155 tcaagacacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 96
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 95 ataatcatctt 85
>gb|BU833423.1|BU833423 T047G10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 432
Score = 77.8 bits (39), Expect = 4e-013
Identities = 153/191 (80%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 222 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 163
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| | |||||| ||||| | ||| || || ||||| ||
Sbjct: 162 taccgaaccaaccccaacgcatcaaaagcatctccttcagtgtaatcagcttggagaaga 103
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| | ||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 102 tcaagatacgtatcccattcgttcccaatcaccttgccgcaagtgaaacaacgaactggg 43
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 42 ataatcatctt 32
>gb|BU828727.1|BU828727 K027P57P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 214
Score = 71.9 bits (36), Expect = 3e-011
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 436 atcccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatctt 495
|||||| ||||||||||| ||||||||||| ||||| || || |||||||||||||||||
Sbjct: 118 atcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactgggataatcatctt 59
>gb|CK109309.1|CK109309 M105C04 Populus female catkins cDNA library Populus trichocarpa
cDNA clone M105C04 5', mRNA sequence
Length = 328
Score = 71.9 bits (36), Expect = 3e-011
Identities = 154/192 (80%), Gaps = 1/192 (0%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| | |||||
Sbjct: 272 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttttacagcaa 213
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| |||| ||||| |||||||| ||||| | ||| || || ||||| ||
Sbjct: 212 taccgaaccaaccccaatgcatcaagagcatctccttcagtgtaatcagcttggagaaga 153
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct: 152 tcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaaacaacgaactggg 93
Query: 485 -ataatcatctt 495
|||||||||||
Sbjct: 92 tataatcatctt 81
>gb|DT495081.1|DT495081 WS0112.BR_F08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_F08
5', mRNA sequence
Length = 594
Score = 69.9 bits (35), Expect = 1e-010
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||||||||||||||| ||||| ||||||| || || ||
Sbjct: 290 ttgtagttcagaagcttctcaatgaggtcaacatgagtcataagcattcttctacaacaa 231
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| ||| |||||| |||||||| ||||| | ||| ||||| || || ||
Sbjct: 230 taacgaaccaaccccagagcatcaagagcatctccttcagtgtaatcggcttgaagaaga 171
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| || || ||||| ||||||||||| || || || || ||||||
Sbjct: 170 tcaagatacgtatcccatttatttccaatcaccttgccgcaagtaaaacaacgaactggg 111
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 110 ataatcatctt 100
>gb|BU862230.1|BU862230 S013A10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 541
Score = 61.9 bits (31), Expect = 3e-008
Identities = 151/191 (79%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||||||||||||||| ||||| ||||||| || || ||
Sbjct: 291 ttgtagttcagaagcttctcaatgaggtcaacatgagtcataagcattcttctacaacaa 232
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| | | |||||| |||||||| ||||| | ||| ||||| || || ||
Sbjct: 231 taacgaaccaacccaagagcatcaagagcatctccttcagtgtaatcggcttgaagaaga 172
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| || || ||||| ||||||||||| || || || || ||||||
Sbjct: 171 tcaagatacgtatcccatttatttccaatcaccttgccgcaagtaaaacaacgaactggg 112
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 111 ataatcatctt 101
>gb|CK099666.1|CK099666 A080P06.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A080P06 5', mRNA sequence
Length = 559
Score = 61.9 bits (31), Expect = 3e-008
Identities = 151/191 (79%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||||||||||||||| ||||| ||||||| || || ||
Sbjct: 274 ttgtagttcagaagcttctcaatgaggtcaacatgagtcataagcattcttctacaacaa 215
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| | | |||||| |||||||| ||||| | ||| ||||| || || ||
Sbjct: 214 taacgaaccaacccaagagcatcaagagcatctccttcagtgtaatcggcttgaagaaga 155
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| || || ||||| ||||||||||| || || || || ||||||
Sbjct: 154 tcaagatacgtatcccatttatttccaatcaccttgccgcaagtaaaacaacgaactggg 95
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 94 ataatcatctt 84
>gb|DT495044.1|DT495044 WS0112.BR_D08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_D08
5', mRNA sequence
Length = 557
Score = 61.9 bits (31), Expect = 3e-008
Identities = 151/191 (79%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||||||||||||||| ||||| ||||||| || || ||
Sbjct: 290 ttgtagttcagaagcttctcaatgaggtcaacatgagtcataagcattcttctacaacaa 231
Query: 365 tagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggaggagg 424
|| || | ||| ||| |||||| |||||||| ||||| | ||| ||||| || || ||
Sbjct: 230 taacgaaccaaccccagagcatcaagagcatctccttcagtgtaatcggcttgaagaaga 171
Query: 425 tcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactggg 484
|| || || |||||| || || ||||| ||||||||||| || || || || |||||
Sbjct: 170 tcaagatacgtatcccatttatttccaatcaccttgccgcaagtaaaacaacgacctggg 111
Query: 485 ataatcatctt 495
|||||||||||
Sbjct: 110 ataatcatctt 100
>gb|CV264107.1|CV264107 WS02023.B21_K06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_K06 3', mRNA sequence
Length = 466
Score = 58.0 bits (29), Expect = 4e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattc 353
|||||||| || | ||||||||||||||||||||| ||||| |||||||
Sbjct: 267 ttgtagttcagaagcttctcaatgaggtcaacatgagtcataagcattc 315
Score = 38.2 bits (19), Expect = 0.38
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatctt 495
||||||||| || || || || |||||||||||||||||
Sbjct: 360 cttgccgcaagtaaaacaacgaactgggataatcatctt 398
>gb|CV248422.1|CV248422 WS01120.B21_L03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_L03 3', mRNA sequence
Length = 603
Score = 52.0 bits (26), Expect = 2e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcag 364
|||||||| || | ||||||||| ||||| ||||| ||||||||||||| || |||||
Sbjct: 505 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattcttctacagcaa 564
Query: 365 tagcggaacaattccaaagcatccagagcatccccttc 402
|| || | ||| |||| ||||| |||||||| |||||
Sbjct: 565 taccgaaccaaccccaacgcatcaagagcatctccttc 602
>gb|DT511217.1|DT511217 WS02429.BR_N22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_N22 5', mRNA sequence
Length = 390
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattc 353
|||||||| || | ||||||||| ||||| ||||| |||||||||||||
Sbjct: 85 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattc 37
>gb|DT515911.1|DT515911 WS02429.B21.1_N22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_N22 3', mRNA sequence
Length = 390
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 305 ttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattc 353
|||||||| || | ||||||||| ||||| ||||| |||||||||||||
Sbjct: 306 ttgtagttcagaagcttctcaataaggtcgacatgagtcatgagcattc 354
>gb|AI165261.1|AI165261 A080P06U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 418
Score = 48.1 bits (24), Expect = 4e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 436 atcccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatctt 495
|||||| || || ||||| ||||||||||| || || || || |||||||||||||||||
Sbjct: 77 atcccatttatttccaatcaccttgccgcaagtaaaacaacgaactgggataatcatctt 18
>gb|BU889952.1|BU889952 P028D03 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 202
Score = 48.1 bits (24), Expect = 4e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 436 atcccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatctt 495
|||||| || || ||||| ||||||||||| || || || || |||||||||||||||||
Sbjct: 131 atcccatttatttccaatcaccttgccgcaagtaaaacaacgaactgggataatcatctt 72
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,293
Number of Sequences: 369679
Number of extensions: 62293
Number of successful extensions: 17321
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17277
Number of HSP's gapped (non-prelim): 35
length of query: 605
length of database: 203,408,664
effective HSP length: 19
effective length of query: 586
effective length of database: 196,384,763
effective search space: 115081471118
effective search space used: 115081471118
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)