BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU869350.1|BU869350 M129A11 Populus flower cDNA library ... 70 1e-010
gb|CA821610.1|CA821610 RSH05B05 two-month-old roots from cl... 70 1e-010
gb|CA825445.1|CA825445 R59A04 two-month-old roots from clon... 70 1e-010
gb|CV236681.1|CV236681 WS01225.B21.1_A02 PT-GT-FL-A-3 Popul... 70 1e-010
gb|CX178987.1|CX178987 G08_45-7_14.ab1 leaf inoculated with... 70 1e-010
gb|DT472071.1|DT472071 WS01225.BR.1_A02 PT-GT-FL-A-3 Populu... 70 1e-010
gb|DT481569.1|DT481569 WS02532.BR_E03 PT-MB-N-A-15 Populus ... 70 1e-010
gb|DT493062.1|DT493062 WS02553.C21_E10 PT-MB-N-A-15 Populus... 70 1e-010
gb|DT495513.1|DT495513 WS01120.BR_L03 PT-P-FL-A-2 Populus t... 70 1e-010
gb|DT495044.1|DT495044 WS0112.BR_D08 PT-P-FL-A-2 Populus tr... 68 4e-010
gb|DT495081.1|DT495081 WS0112.BR_F08 PT-P-FL-A-2 Populus tr... 68 4e-010
gb|BU862230.1|BU862230 S013A10 Populus imbibed seed cDNA li... 66 2e-009
gb|CF231483.1|CF231483 PtaC0022A11A1101 Poplar cDNA library... 66 2e-009
gb|CK099666.1|CK099666 A080P06.5pR Hybrid aspen plasmid lib... 66 2e-009
gb|CV264107.1|CV264107 WS02023.B21_K06 PTxN-IB-N-A-11 Popul... 66 2e-009
gb|BU822258.1|BU822258 UB34DPE10 Populus tremula cambium cD... 62 3e-008
gb|CK109309.1|CK109309 M105C04 Populus female catkins cDNA ... 62 3e-008
gb|BU833423.1|BU833423 T047G10 Populus apical shoot cDNA li... 58 4e-007
gb|CV248422.1|CV248422 WS01120.B21_L03 PT-P-FL-A-2 Populus ... 58 4e-007
gb|DT511217.1|DT511217 WS02429.BR_N22 PTxD-ICC-N-A-14 Popul... 58 4e-007
gb|DT515911.1|DT515911 WS02429.B21.1_N22 PTxD-ICC-N-A-14 Po... 58 4e-007
gb|BU828727.1|BU828727 K027P57P Populus apical shoot cDNA l... 54 6e-006
gb|AI165261.1|AI165261 A080P06U Hybrid aspen plasmid librar... 50 1e-004
gb|DT481052.1|DT481052 WS02530.BR_M02 PT-MB-N-A-15 Populus ... 40 0.095
gb|DT486354.1|DT486354 WS02530.B21_M02 PT-MB-N-A-15 Populus... 40 0.095
gb|AI162567.1|AI162567 A019P50U Hybrid aspen plasmid librar... 38 0.38
gb|CA824944.1|CA824944 R50G04 two-month-old roots from clon... 38 0.38
>gb|BU869350.1|BU869350 M129A11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 557
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 291 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 232
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 231 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 172
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 171 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 113
>gb|CA821610.1|CA821610 RSH05B05 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 614
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 295 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 236
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 235 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 176
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 175 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 117
>gb|CA825445.1|CA825445 R59A04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 588
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 295 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 236
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 235 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 176
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 175 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 117
>gb|CV236681.1|CV236681 WS01225.B21.1_A02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_A02 3', mRNA sequence
Length = 638
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Plus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 304 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 363
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 364 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 423
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 424 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 482
>gb|CX178987.1|CX178987 G08_45-7_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 430
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 263 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 204
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 203 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 144
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 143 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 85
>gb|DT472071.1|DT472071 WS01225.BR.1_A02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_A02 5', mRNA sequence
Length = 607
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 304 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 245
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 244 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 185
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 184 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 126
>gb|DT481569.1|DT481569 WS02532.BR_E03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_E03 5', mRNA sequence
Length = 825
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Plus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 265 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 324
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 325 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 384
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 385 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 443
>gb|DT493062.1|DT493062 WS02553.C21_E10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_E10 3', mRNA sequence
Length = 588
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Plus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 298 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 357
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 358 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 417
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 418 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 476
>gb|DT495513.1|DT495513 WS01120.BR_L03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_L03 5', mRNA sequence
Length = 719
Score = 69.9 bits (35), Expect = 1e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 292 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 233
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 232 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 173
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 172 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 114
>gb|DT495044.1|DT495044 WS0112.BR_D08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_D08
5', mRNA sequence
Length = 557
Score = 67.9 bits (34), Expect = 4e-010
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||||||||||||||| ||||| ||||||
Sbjct: 302 ttctccagagtattgtagttcagaagcttctcaatgaggtcaacatgagtcataagcatt 243
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttc 417
| || || || || || | ||| |||||||||| |||||||| |||||
Sbjct: 242 cttctacaacaataacgaaccaaccccagagcatcaagagcatctccttc 193
>gb|DT495081.1|DT495081 WS0112.BR_F08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_F08
5', mRNA sequence
Length = 594
Score = 67.9 bits (34), Expect = 4e-010
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||||||||||||||| ||||| ||||||
Sbjct: 302 ttctccagagtattgtagttcagaagcttctcaatgaggtcaacatgagtcataagcatt 243
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttc 417
| || || || || || | ||| |||||||||| |||||||| |||||
Sbjct: 242 cttctacaacaataacgaaccaaccccagagcatcaagagcatctccttc 193
>gb|BU862230.1|BU862230 S013A10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 541
Score = 65.9 bits (33), Expect = 2e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||||||||||||||| ||||| ||||||
Sbjct: 303 ttctccagagtattgtagttcagaagcttctcaatgaggtcaacatgagtcataagcatt 244
Query: 368 c 368
|
Sbjct: 243 c 243
>gb|CF231483.1|CF231483 PtaC0022A11A1101 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 542
Score = 65.9 bits (33), Expect = 2e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||||||||| ||||||||||||
Sbjct: 299 ttctccagagtattgtagttcagaagcttctcaataaggtcaacatgagtcatgagcatt 240
Query: 368 c 368
|
Sbjct: 239 c 239
Score = 54.0 bits (27), Expect = 6e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 452 tcccacttgttcccaatcaccttgccgcaggtgaa 486
||||| ||||||||||||||||||||||| |||||
Sbjct: 155 tcccatttgttcccaatcaccttgccgcaagtgaa 121
>gb|CK099666.1|CK099666 A080P06.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A080P06 5', mRNA sequence
Length = 559
Score = 65.9 bits (33), Expect = 2e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||||||||||||||| ||||| ||||||
Sbjct: 286 ttctccagagtattgtagttcagaagcttctcaatgaggtcaacatgagtcataagcatt 227
Query: 368 c 368
|
Sbjct: 226 c 226
>gb|CV264107.1|CV264107 WS02023.B21_K06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_K06 3', mRNA sequence
Length = 466
Score = 65.9 bits (33), Expect = 2e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||||||||||||||| ||||| ||||||
Sbjct: 255 ttctccagagtattgtagttcagaagcttctcaatgaggtcaacatgagtcataagcatt 314
Query: 368 c 368
|
Sbjct: 315 c 315
>gb|BU822258.1|BU822258 UB34DPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 454
Score = 61.9 bits (31), Expect = 3e-008
Identities = 142/179 (79%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 287 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 228
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| || ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 227 cttctacagcaataccgaaccaaccccaacgcatcaagagcatctccttcagtgtaatca 168
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || | ||||| ||||||||||||||||||||||| |||||
Sbjct: 167 gcttggagaagatcaagacacgtatcccatttgttcccaatcaccttgccgcaagtgaa 109
>gb|CK109309.1|CK109309 M105C04 Populus female catkins cDNA library Populus trichocarpa
cDNA clone M105C04 5', mRNA sequence
Length = 328
Score = 61.9 bits (31), Expect = 3e-008
Identities = 142/179 (79%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 284 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 225
Query: 368 cgcctgcagcagtagcggaacaattccagagcatccagagcatccccttccgagtagtcg 427
| | ||||| || || | ||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct: 224 cttttacagcaataccgaaccaaccccaatgcatcaagagcatctccttcagtgtaatca 165
Query: 428 gcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 486
|| ||||| || || || || ||||| ||||||||||||||||||||||| |||||
Sbjct: 164 gcttggagaagatcaagatacgtatcccatttgttcccaatcaccttgccgcaagtgaa 106
>gb|BU833423.1|BU833423 T047G10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 432
Score = 58.0 bits (29), Expect = 4e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 234 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 175
Query: 368 c 368
|
Sbjct: 174 c 174
>gb|CV248422.1|CV248422 WS01120.B21_L03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_L03 3', mRNA sequence
Length = 603
Score = 58.0 bits (29), Expect = 4e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 493 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 552
Query: 368 c 368
|
Sbjct: 553 c 553
>gb|DT511217.1|DT511217 WS02429.BR_N22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_N22 5', mRNA sequence
Length = 390
Score = 58.0 bits (29), Expect = 4e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 97 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 38
Query: 368 c 368
|
Sbjct: 37 c 37
>gb|DT515911.1|DT515911 WS02429.B21.1_N22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_N22 3', mRNA sequence
Length = 390
Score = 58.0 bits (29), Expect = 4e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||| ||||| ||||| ||||||||||||
Sbjct: 294 ttctccagagtattgtagttcagaagcttctcaataaggtcgacatgagtcatgagcatt 353
Query: 368 c 368
|
Sbjct: 354 c 354
>gb|BU828727.1|BU828727 K027P57P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 214
Score = 54.0 bits (27), Expect = 6e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 452 tcccacttgttcccaatcaccttgccgcaggtgaa 486
||||| ||||||||||||||||||||||| |||||
Sbjct: 117 tcccatttgttcccaatcaccttgccgcaagtgaa 83
>gb|AI165261.1|AI165261 A080P06U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 418
Score = 50.1 bits (25), Expect = 1e-004
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 308 ttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgggtcatgagcatt 367
|||||||| || |||||||| || | ||||||||||||| ||||||| ||||| ||||||
Sbjct: 219 ttctccagagtattgtagttcagaagcttctcaatgagg-caacatgagtcataagcatt 161
Query: 368 c 368
|
Sbjct: 160 c 160
>gb|DT481052.1|DT481052 WS02530.BR_M02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_M02 5', mRNA sequence
Length = 167
Score = 40.1 bits (20), Expect = 0.095
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 108 atcttcgccgccgccgccgc 89
>gb|DT486354.1|DT486354 WS02530.B21_M02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_M02 3', mRNA sequence
Length = 167
Score = 40.1 bits (20), Expect = 0.095
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 60 atcttcgccgccgccgccgc 79
>gb|AI162567.1|AI162567 A019P50U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 558
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 448 gaggtcccacttgttccca 466
|||||||||||||||||||
Sbjct: 546 gaggtcccacttgttccca 528
>gb|CA824944.1|CA824944 R50G04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 507 tcttcgccgccgccgccgc 525
|||||||||||||||||||
Sbjct: 232 tcttcgccgccgccgccgc 214
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,986
Number of Sequences: 369679
Number of extensions: 64986
Number of successful extensions: 19867
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19810
Number of HSP's gapped (non-prelim): 54
length of query: 608
length of database: 203,408,664
effective HSP length: 19
effective length of query: 589
effective length of database: 196,384,763
effective search space: 115670625407
effective search space used: 115670625407
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)