BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437842.2.1
(1093 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI136474.1|BI136474 F068P90Y Populus flower cDNA library... 72 5e-011
gb|BI136793.1|BI136793 F074P14Y Populus flower cDNA library... 72 5e-011
gb|BI138058.1|BI138058 F097P77Y Populus flower cDNA library... 72 5e-011
gb|BU825705.1|BU825705 UK112TB04 Populus apical shoot cDNA ... 72 5e-011
gb|CK091788.1|CK091788 F126P02.3pR Populus flower cDNA libr... 72 5e-011
gb|CK101501.1|CK101501 F074P14.5pR Populus flower cDNA libr... 72 5e-011
gb|CN520078.1|CN520078 GQ0108.B3_B17 GQ010 Populus trichoca... 72 5e-011
gb|CV235091.1|CV235091 WS01217.B21_K15 PT-GT-FL-A-3 Populus... 72 5e-011
gb|CV235313.1|CV235313 WS01218.B21_K03 PT-GT-FL-A-3 Populus... 72 5e-011
gb|CV242183.1|CV242183 WS02514.B21.1_F24 PT-MB-N-A-15 Popul... 72 5e-011
gb|DT473557.1|DT473557 WS0123.BR_A07 PT-GT-FL-A-3 Populus t... 72 5e-011
gb|DT476835.1|DT476835 WS01231.B21_A11 PT-GT-FL-A-3 Populus... 72 5e-011
gb|DT516250.1|DT516250 WS02430.B21_N09 PTxD-ICC-N-A-14 Popu... 72 5e-011
gb|AF041050.1|AF041050 Populus tremuloides clone Pt4CL2 4-c... 72 5e-011
gb|AF283553.1|AF283553 Populus balsamifera subsp. trichocar... 72 5e-011
gb|CV259494.1|CV259494 WS02011.B21_I04 PTxN-IB-N-A-11 Popul... 64 1e-008
gb|BP934384.1|BP934384 BP934384 full-length enriched poplar... 64 1e-008
gb|BP934766.1|BP934766 BP934766 full-length enriched poplar... 64 1e-008
gb|DT525811.1|DT525811 WS02046.C21_F17 PTxN-IB-N-A-11 Popul... 64 1e-008
gb|DT522980.1|DT522980 WS02038.B21_H07 PTxN-IB-N-A-11 Popul... 52 5e-005
gb|AF041049.1|AF041049 Populus tremuloides clone Pt4CL1 4-c... 52 5e-005
gb|AF283552.1|AF283552 Populus balsamifera subsp. trichocar... 52 5e-005
gb|AY043495.1| Populus tomentosa 4-coumarate:CoA ligase mRN... 52 5e-005
gb|AF314180.1|AF314180 Populus tomentosa 4-coumarate:CoA li... 52 5e-005
gb|DQ076679.1| Populus tomentosa 4-coumarate:CoA ligase mRN... 52 5e-005
gb|AF008183.1|AF008183 Populus x generosa strain H11 4-coum... 48 7e-004
gb|BU877600.1|BU877600 V036F12 Populus flower cDNA library ... 46 0.003
gb|BU886245.1|BU886245 R042F08 Populus root cDNA library Po... 46 0.003
gb|CK097680.1|CK097680 UB58DPD05.3pR Populus active cambium... 46 0.003
gb|CX183816.1|CX183816 G03_45-41_13.ab1 leaf inoculated wit... 46 0.003
gb|AF008184.1|AF008184 Populus x generosa strain H11 4-coum... 46 0.003
gb|AJ771595.1|AJ771595 AJ771595 Populus euphratica root 3-6... 44 0.011
gb|AY043494.1| Populus tomentosa 4-coumarate:CoA ligase gen... 44 0.011
gb|AY575768.1| Populus tomentosa 4-coumarate:CoA ligase mRN... 44 0.011
gb|AJ769625.1|AJ769625 AJ769625 Populus euphratica leaf 3-6... 42 0.044
gb|CV283348.1|CV283348 WS0187.B21_B11 PTxD-IL-N-A-9 Populus... 42 0.044
gb|CX653496.1|CX653496 PO02002H02 Poplar SC cDNA library Po... 42 0.044
gb|DT504670.1|DT504670 WS01314.B21_E18 PTxD-IL-FL-A-4 Popul... 42 0.044
gb|DT506215.1|DT506215 WS01812.C21_P23 PTxD-IL-N-A-9 Populu... 42 0.044
gb|BP924351.1|BP924351 BP924351 full-length enriched poplar... 40 0.17
gb|BP936106.1|BP936106 BP936106 full-length enriched poplar... 40 0.17
>gb|BI136474.1|BI136474 F068P90Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 393
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 66 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 125
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 126 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 181
>gb|BI136793.1|BI136793 F074P14Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 515
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 66 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 125
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 126 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 181
>gb|BI138058.1|BI138058 F097P77Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 453
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 66 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 125
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 126 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 181
>gb|BU825705.1|BU825705 UK112TB04 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 576
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 176 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 235
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 236 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 291
>gb|CK091788.1|CK091788 F126P02.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F126P02 3', mRNA sequence
Length = 850
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 631 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 572
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 571 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 516
>gb|CK101501.1|CK101501 F074P14.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F074P14 5', mRNA sequence
Length = 424
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 66 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 125
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 126 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 181
>gb|CN520078.1|CN520078 GQ0108.B3_B17 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_B17 5', mRNA sequence
Length = 732
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 38 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 97
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 98 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 153
>gb|CV235091.1|CV235091 WS01217.B21_K15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01217_K15 3', mRNA sequence
Length = 718
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 616 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 557
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 556 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 501
>gb|CV235313.1|CV235313 WS01218.B21_K03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_K03 3', mRNA sequence
Length = 585
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 532 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 473
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 472 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 417
>gb|CV242183.1|CV242183 WS02514.B21.1_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_F24 3', mRNA sequence
Length = 876
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 604 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 545
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 544 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 489
>gb|DT473557.1|DT473557 WS0123.BR_A07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0123_A07 5', mRNA sequence
Length = 695
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 295 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 354
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 355 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 410
>gb|DT476835.1|DT476835 WS01231.B21_A11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_A11 3', mRNA sequence
Length = 860
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 465 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 406
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 405 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttga 350
>gb|DT516250.1|DT516250 WS02430.B21_N09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_N09 3', mRNA sequence
Length = 795
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 641 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 582
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 581 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 526
>gb|AF041050.1|AF041050 Populus tremuloides clone Pt4CL2 4-coumarate:CoA ligase mRNA,
complete cds
Length = 1713
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 1324 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 1383
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 1384 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 1439
>gb|AF283553.1|AF283553 Populus balsamifera subsp. trichocarpa x Populus deltoides
4-coumarate:CoA ligase 4 mRNA, complete cds
Length = 1917
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 1324 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgttgat 1383
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 1384 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 1439
>gb|CV259494.1|CV259494 WS02011.B21_I04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_I04 3', mRNA sequence
Length = 733
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| || ||
Sbjct: 584 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgtcgat 525
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 524 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 469
>gb|BP934384.1|BP934384 BP934384 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-064_I21.r 3', mRNA sequence
Length = 633
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| || ||
Sbjct: 528 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgtcgat 469
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 468 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 413
>gb|BP934766.1|BP934766 BP934766 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-069_D17.r 3', mRNA sequence
Length = 573
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| || ||
Sbjct: 529 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgtcgat 470
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 469 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 414
>gb|DT525811.1|DT525811 WS02046.C21_F17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_F17 3', mRNA sequence
Length = 862
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| |||||||| || || ||||| || ||||||||||||||||| ||||| || ||
Sbjct: 573 tggctccacactggagatataggttatgtcgacgacgacgacgagattttcattgtcgat 514
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttga 497
|| ||||||| || || |||| ||| |||||||| || || || |||||||||||
Sbjct: 513 agagtgaaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttga 458
>gb|DT522980.1|DT522980 WS02038.B21_H07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02038_H07 3', mRNA sequence
Length = 910
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
|||||||||| || ||||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 823 ggaaccagcctggtgagatctgcatccggggtgatcagatcatgaaaggatatcttaatg 764
Query: 344 atccagaggc 353
| || |||||
Sbjct: 763 accctgaggc 754
>gb|AF041049.1|AF041049 Populus tremuloides clone Pt4CL1 4-coumarate:CoA ligase mRNA,
complete cds
Length = 1915
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
|||||||||| || ||||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 1215 ggaaccagcctggtgagatctgcatccggggtgatcagatcatgaaaggatatcttaatg 1274
Query: 344 atccagaggc 353
| || |||||
Sbjct: 1275 accccgaggc 1284
>gb|AF283552.1|AF283552 Populus balsamifera subsp. trichocarpa x Populus deltoides
4-coumarate:CoA ligase 3 mRNA, complete cds
Length = 1862
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
|||||||||| || ||||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 1154 ggaaccagcctggtgagatctgcatccggggtgatcagatcatgaaaggatatcttaatg 1213
Query: 344 atccagaggc 353
| || |||||
Sbjct: 1214 accctgaggc 1223
>gb|AY043495.1| Populus tomentosa 4-coumarate:CoA ligase mRNA, complete cds
Length = 1740
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
|||||||||| || ||||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 1152 ggaaccagcctggtgagatctgcatccggggtgatcagatcatgaaaggatatcttaatg 1211
Query: 344 atccagaggc 353
| || |||||
Sbjct: 1212 accctgaggc 1221
>gb|AF314180.1|AF314180 Populus tomentosa 4-coumarate:CoA ligase (4cl) mRNA, complete cds
Length = 1619
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
|||||||||| || ||||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 1143 ggaaccagcctggtgagatctgcatccggggtgatcagatcatgaaaggatatcttaatg 1202
Query: 344 atccagaggc 353
| || |||||
Sbjct: 1203 accctgaggc 1212
>gb|DQ076679.1| Populus tomentosa 4-coumarate:CoA ligase mRNA, complete cds
Length = 1631
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
|||||||||| || ||||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 1146 ggaaccagcctggtgagatctgcatccggggtgatcagatcatgaaaggatatcttaatg 1205
Query: 344 atccagaggc 353
| || |||||
Sbjct: 1206 accctgaggc 1215
>gb|AF008183.1|AF008183 Populus x generosa strain H11 4-coumarate:CoA ligase 2 (4CL2) mRNA,
complete cds
Length = 1922
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 457 atcaaatacaagggcttccaagtacctcctgcggagcttgaagc 500
||||||||||| || ||||||||| | ||||| |||||||||||
Sbjct: 1343 atcaaatacaaaggtttccaagtagcacctgctgagcttgaagc 1386
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 319 caaatcatgaaaggttatctgaatgatccagaggc 353
||||| |||||||||||||| |||||||| |||||
Sbjct: 1208 caaataatgaaaggttatctaaatgatcctgaggc 1242
>gb|BU877600.1|BU877600 V036F12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 610
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 319 caaatcatgaaaggttatctgaatgatccagaggc 353
|||||||||||||||||||| ||||| || |||||
Sbjct: 375 caaatcatgaaaggttatctaaatgaccctgaggc 409
Score = 42.1 bits (21), Expect = 0.044
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 460 aaatacaagggcttccaagtacctcctgcggagcttgaagc 500
||||||||||| || |||||| | ||||| |||||||||||
Sbjct: 516 aaatacaagggttttcaagtagcacctgctgagcttgaagc 556
>gb|BU886245.1|BU886245 R042F08 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 558
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 319 caaatcatgaaaggttatctgaatgatccagaggc 353
|||||||||||||||||||| ||||| || |||||
Sbjct: 50 caaatcatgaaaggttatctaaatgaccctgaggc 84
>gb|CK097680.1|CK097680 UB58DPD05.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB58DPD05 3', mRNA sequence
Length = 773
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 436 gttgacaggctgaaggagataatcaaatacaaggg 470
||||||||||||||||| | ||||||||||||||
Sbjct: 485 gttgacaggctgaaggaactgatcaaatacaaggg 451
>gb|CX183816.1|CX183816 G03_45-41_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 678
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 319 caaatcatgaaaggttatctgaatgatccagaggc 353
|||||||||||||||||||| ||||| || |||||
Sbjct: 76 caaatcatgaaaggttatctaaatgaccctgaggc 110
Score = 44.1 bits (22), Expect = 0.011
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 379 ggatggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgtt 438
|||||| ||||||| || |||||||| ||| | |||| || || ||| |||| ||||||
Sbjct: 136 ggatggttgcacaccggcgacattggatacatcgacggagatgatgagctctttatcgtt 195
Query: 439 gacaggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaa 498
|| | ||||| || | || ||||||||||| || |||||| | ||||| |||||||||
Sbjct: 196 gatcgactgaaagaattgattaaatacaagggttttcaagtagcacctgctgagcttgaa 255
Query: 499 gc 500
||
Sbjct: 256 gc 257
>gb|AF008184.1|AF008184 Populus x generosa strain H11 4-coumarate:CoA ligase 1 (4CL1) mRNA,
complete cds
Length = 2042
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 319 caaatcatgaaaggttatctgaatgatccagaggc 353
|||||||||||||||||||| ||||| || |||||
Sbjct: 1214 caaatcatgaaaggttatctaaatgaccctgaggc 1248
Score = 44.1 bits (22), Expect = 0.011
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 379 ggatggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgtt 438
|||||| ||||||| || |||||||| ||| | |||| || || ||| |||| ||||||
Sbjct: 1274 ggatggttgcacaccggcgacattggatacatcgacggagatgatgagctctttatcgtt 1333
Query: 439 gacaggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaa 498
|| | ||||| || | || ||||||||||| || |||||| | ||||| |||||||||
Sbjct: 1334 gatcgactgaaagaattgattaaatacaagggttttcaagtagcacctgctgagcttgaa 1393
Query: 499 gc 500
||
Sbjct: 1394 gc 1395
>gb|AJ771595.1|AJ771595 AJ771595 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600003B05F1, mRNA sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.011
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
||||| |||| || ||||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 639 ggaacaagcctggtgagatctgcatccggggtgatcagatcatgaaaggatatcttaatg 580
Query: 344 atccagaggc 353
| || |||||
Sbjct: 579 accctgaggc 570
>gb|AY043494.1| Populus tomentosa 4-coumarate:CoA ligase gene, complete cds
Length = 4397
Score = 44.1 bits (22), Expect = 0.011
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggt 333
|||||||||| || ||||| |||||||| || || || ||||||||||||
Sbjct: 3472 ggaaccagcctggtgagatctgcatccggggtgatcagatcatgaaaggt 3521
>gb|AY575768.1| Populus tomentosa 4-coumarate:CoA ligase mRNA, partial cds
Length = 1200
Score = 44.1 bits (22), Expect = 0.011
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
|||||||||| || |||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 725 ggaaccagcctggtgagacctgcatccggggtgatcagatcatgaaaggatatcttaatg 784
Query: 344 atccagaggc 353
| || |||||
Sbjct: 785 accctgaggc 794
>gb|AJ769625.1|AJ769625 AJ769625 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001000011A02F1, mRNA sequence
Length = 554
Score = 42.1 bits (21), Expect = 0.044
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 284 ggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatg 343
||||| |||| || ||||| |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 328 ggaacaagcctggtgagatctgcatccggggtgatcagatcatgaaaggatatcttaatg 387
Query: 344 a 344
|
Sbjct: 388 a 388
>gb|CV283348.1|CV283348 WS0187.B21_B11 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0187_B11 3', mRNA sequence
Length = 910
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 700 aagaatccctccggcaagatt 720
|||||||||||||||||||||
Sbjct: 664 aagaatccctccggcaagatt 684
>gb|CX653496.1|CX653496 PO02002H02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02002H02 5', mRNA sequence
Length = 418
Score = 42.1 bits (21), Expect = 0.044
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 130 caggggtacgggatgaccgaggcggggcccgtgctggccatgtgcctggcctt 182
||||| || |||||||| ||||||||||| ||||| | |||||| |||||||
Sbjct: 56 cagggttatgggatgacagaggcggggcctgtgctatcaatgtgcttggcctt 108
>gb|DT504670.1|DT504670 WS01314.B21_E18 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_E18 3', mRNA sequence
Length = 930
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 700 aagaatccctccggcaagatt 720
|||||||||||||||||||||
Sbjct: 684 aagaatccctccggcaagatt 704
>gb|DT506215.1|DT506215 WS01812.C21_P23 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01812_P23 3', mRNA sequence
Length = 848
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 700 aagaatccctccggcaagatt 720
|||||||||||||||||||||
Sbjct: 664 aagaatccctccggcaagatt 684
>gb|BP924351.1|BP924351 BP924351 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-031_A14.f 5', mRNA sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 326 tgaaaggttatctgaatgatccagaggc 353
||||||||||||| |||||||| |||||
Sbjct: 546 tgaaaggttatctaaatgatcctgaggc 573
>gb|BP936106.1|BP936106 BP936106 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-086_C06.r 3', mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 457 atcaaatacaagggcttccaagtacctcctgcggagcttgaagc 500
|||||||||| || ||||||||| | ||||| |||||||||||
Sbjct: 557 atcaaatacagaggtttccaagtagcacctgctgagcttgaagc 514
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,174
Number of Sequences: 369679
Number of extensions: 100174
Number of successful extensions: 27425
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27260
Number of HSP's gapped (non-prelim): 146
length of query: 1093
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1074
effective length of database: 196,384,763
effective search space: 210917235462
effective search space used: 210917235462
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)