BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA librar... 68 7e-010
gb|BU829781.1|BU829781 K067P31P Populus apical shoot cDNA l... 62 5e-008
gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichoca... 60 2e-007
gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus... 60 2e-007
gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populu... 60 2e-007
gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library ... 58 7e-007
gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus... 58 7e-007
gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus... 58 7e-007
gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Popul... 58 7e-007
gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Popu... 58 7e-007
gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed l... 54 1e-005
gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus t... 48 7e-004
gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus t... 48 7e-004
gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Popul... 46 0.003
gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Popu... 46 0.003
gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Popu... 46 0.003
gb|CF118835.1|CF118835 MTU10CS.P10.A02 Aspen stem cDNA Libr... 42 0.042
gb|AJ780529.1|AJ780529 AJ780529 Populus euphratica leaf 3-6... 42 0.042
gb|AJ780730.1|AJ780730 AJ780730 Populus euphratica leaf 3-6... 42 0.042
gb|BP930742.1|BP930742 BP930742 full-length enriched poplar... 40 0.17
gb|BP934304.1|BP934304 BP934304 full-length enriched poplar... 40 0.17
gb|DT517892.1|DT517892 WS02435.B21_J19 PTxD-ICC-N-A-14 Popu... 40 0.17
>gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone V017D11 3', mRNA sequence
Length = 765
Score = 67.9 bits (34), Expect = 7e-010
Identities = 121/150 (80%)
Strand = Plus / Minus
Query: 3 ggcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggt 62
|||||| |||| |||||| || | ||||||||||| ||||| ||||| |||||||| ||
Sbjct: 568 ggcaattattcatcatcctcgtgtaggtgaatatgcttttggtttcatcacatcaacagt 509
Query: 63 ggtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatca 122
||||||||| || || | || ||||| |||||||||| | ||| |||||||| ||
Sbjct: 508 aatccttcagagagataatgaagatgaagagttgtgtagtgtttttgttccaacaaacca 449
Query: 123 tctgtacatcggtgatatatttctggtgaa 152
||| || || ||||||||||| ||||||||
Sbjct: 448 tctatatattggtgatatattcctggtgaa 419
>gb|BU829781.1|BU829781 K067P31P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 535
Score = 61.9 bits (31), Expect = 5e-008
Identities = 122/151 (80%), Gaps = 1/151 (0%)
Strand = Plus / Plus
Query: 3 ggcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggt 62
|||||| |||| |||||| || | ||||||||||| ||||| ||||| |||||||| ||
Sbjct: 384 ggcaattattcatcatcctcgtgtaggtgaatatgcttttggtttcatcacatcaacagt 443
Query: 63 ggtccttcagactgacaaagg-cgacgaagaactgtgtagtgtgtatgtgccaacaaatc 121
||||||||| || || | ||| ||||| |||||||||| | ||| |||||||| |
Sbjct: 444 aatccttcagagagataatgaacgatgaagagttgtgtagtgtttttgttccaacaaacc 503
Query: 122 atctgtacatcggtgatatatttctggtgaa 152
|||| || || ||||||||||| ||||||||
Sbjct: 504 atctatatattggtgatatattcctggtgaa 534
>gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_N05 5', mRNA sequence
Length = 772
Score = 60.0 bits (30), Expect = 2e-007
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 3 ggcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggt 62
|||||| |||| |||||| || | ||||||||||| ||||| ||||| |||||||| ||
Sbjct: 512 ggcaattattcatcatcctcgtgtaggtgaatatgcttttggtttcatcacatcaacagt 571
Query: 63 ggtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatca 122
||||||||| || || | || ||||| |||||||||| | ||| || ||||| ||
Sbjct: 572 aatccttcagagagataatgaagatgaagagttgtgtagtgtttttgttccgacaaacca 631
Query: 123 tctgtacatcggtgatatatttctggtgaa 152
||| || || ||||||||||| ||||||||
Sbjct: 632 tctatatattggtgatatattcctggtgaa 661
>gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_L02 3', mRNA sequence
Length = 715
Score = 60.0 bits (30), Expect = 2e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 3 ggcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggt 62
|||||| |||| |||||| || | ||||||||||| ||||| ||||| |||||||| ||
Sbjct: 599 ggcaattattcatcatcctcgtgtaggtgaatatgcttttggtttcatcacatcaacagt 540
Query: 63 ggtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatca 122
||||||||| || || | || ||||| |||||||||| | ||| || ||||| ||
Sbjct: 539 aatccttcagagagataatgaagatgaagagttgtgtagtgtttttgttccgacaaacca 480
Query: 123 tctgtacatcggtgatatatttctggtgaa 152
||| || || ||||||||||| ||||||||
Sbjct: 479 tctatatattggtgatatattcctggtgaa 450
>gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_K22 3', mRNA sequence
Length = 745
Score = 60.0 bits (30), Expect = 2e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 3 ggcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggt 62
|||||| |||| |||||| || | ||||||||||| ||||| ||||| |||||||| ||
Sbjct: 599 ggcaattattcatcatcctcgtgtaggtgaatatgcttttggtttcatcacatcaacagt 540
Query: 63 ggtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatca 122
||||||||| || || | || ||||| |||||||||| | ||| || ||||| ||
Sbjct: 539 aatccttcagagagataatgaagatgaagagttgtgtagtgtttttgttccgacaaacca 480
Query: 123 tctgtacatcggtgatatatttctggtgaa 152
||| || || ||||||||||| ||||||||
Sbjct: 479 tctatatattggtgatatattcctggtgaa 450
>gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 734
Score = 58.0 bits (29), Expect = 7e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggt 149
|||| ||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 609 gtgtctatgttcccacaaatcatctgtacattggtgatatattcctggt 657
>gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_N14 3', mRNA sequence
Length = 624
Score = 58.0 bits (29), Expect = 7e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggt 149
|||| ||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 500 gtgtctatgttcccacaaatcatctgtacattggtgatatattcctggt 452
>gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_O22 3', mRNA sequence
Length = 866
Score = 58.0 bits (29), Expect = 7e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggt 149
|||| ||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 494 gtgtctatgttcccacaaatcatctgtacattggtgatatattcctggt 446
>gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 5', mRNA sequence
Length = 919
Score = 58.0 bits (29), Expect = 7e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggt 149
|||| ||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 618 gtgtctatgttcccacaaatcatctgtacattggtgatatattcctggt 666
>gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 3', mRNA sequence
Length = 817
Score = 58.0 bits (29), Expect = 7e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggt 149
|||| ||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 495 gtgtctatgttcccacaaatcatctgtacattggtgatatattcctggt 447
>gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL76PH09 3',
mRNA sequence
Length = 715
Score = 54.0 bits (27), Expect = 1e-005
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 31 gaatatgcatttggattcataacatcaacggtggtccttcagactgacaaaggcgacgaa 90
|||||||||||||| ||||| |||||| | | |||||||||| || || || || |||
Sbjct: 547 gaatatgcatttggtttcatcacatcatctttagtccttcagagagagaatggggatgaa 488
Query: 91 gaactgtgtagtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggt 149
|| | || || || ||||| ||||| || ||||||||||| |||||| ||||||||||
Sbjct: 487 gagttatgcagcgtttatgtcccaaccaaccatctgtacattggtgatgtatttctggt 429
>gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_O23 3', mRNA sequence
Length = 638
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 106 tatgtgccaacaaatcatctgtacatcggtgatatatttctggt 149
||||| ||||| || ||||||||||| |||||| ||||||||||
Sbjct: 569 tatgtcccaaccaaccatctgtacattggtgatgtatttctggt 526
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 167 taagacctaatttatctattcgaga 191
||||||| |||||||||||||||||
Sbjct: 508 taagaccaaatttatctattcgaga 484
>gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_O02 3', mRNA sequence
Length = 816
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 106 tatgtgccaacaaatcatctgtacatcggtgatatatttctggt 149
||||| ||||| || ||||||||||| |||||| ||||||||||
Sbjct: 602 tatgtcccaaccaaccatctgtacattggtgatgtatttctggt 559
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 167 taagacctaatttatctattcgaga 191
||||||| |||||||||||||||||
Sbjct: 541 taagaccaaatttatctattcgaga 517
>gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_J18 3', mRNA sequence
Length = 874
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatt 143
|||||||||| || || |||||||||||||| || ||||||||
Sbjct: 399 gtgtgtatgttcccacgaatcatctgtacattggagatatatt 357
>gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N17 3', mRNA sequence
Length = 871
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatt 143
|||||||||| || || |||||||||||||| || ||||||||
Sbjct: 405 gtgtgtatgttcccacgaatcatctgtacattggagatatatt 363
>gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N19 3', mRNA sequence
Length = 876
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatt 143
|||||||||| || || |||||||||||||| || ||||||||
Sbjct: 406 gtgtgtatgttcccacgaatcatctgtacattggagatatatt 364
>gb|CF118835.1|CF118835 MTU10CS.P10.A02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 171
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 167 taagacctaatttatctattcgaga 191
||||||| |||||||||||||||||
Sbjct: 134 taagaccaaatttatctattcgaga 110
>gb|AJ780529.1|AJ780529 AJ780529 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900009C07F1, mRNA sequence
Length = 218
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 167 taagacctaatttatctattcgaga 191
||||||| |||||||||||||||||
Sbjct: 148 taagaccaaatttatctattcgaga 124
>gb|AJ780730.1|AJ780730 AJ780730 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900011F12F1, mRNA sequence
Length = 187
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 167 taagacctaatttatctattcgaga 191
||||||| |||||||||||||||||
Sbjct: 148 taagaccaaatttatctattcgaga 124
>gb|BP930742.1|BP930742 BP930742 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-014_D01.r 3', mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 372 ttattcattcttttggtttc 391
||||||||||||||||||||
Sbjct: 160 ttattcattcttttggtttc 141
>gb|BP934304.1|BP934304 BP934304 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-063_B13.r 3', mRNA sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 372 ttattcattcttttggtttc 391
||||||||||||||||||||
Sbjct: 161 ttattcattcttttggtttc 142
>gb|DT517892.1|DT517892 WS02435.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_J19 3', mRNA sequence
Length = 823
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 27 tggtgaatatgcatttggat 46
||||||||||||||||||||
Sbjct: 808 tggtgaatatgcatttggat 789
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,314
Number of Sequences: 369679
Number of extensions: 138314
Number of successful extensions: 40710
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40659
Number of HSP's gapped (non-prelim): 47
length of query: 1041
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1022
effective length of database: 196,384,763
effective search space: 200705227786
effective search space used: 200705227786
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)