BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430946.2.2
(3838 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6... 436 e-120
gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6... 422 e-116
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 410 e-112
gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cD... 379 e-103
gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6... 355 8e-096
gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium... 317 2e-084
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 220 3e-055
gb|DV466097.1|DV466097 MTUNUL1.P47.C03 NUL Populus fremonti... 188 1e-045
gb|CA925680.1|CA925680 MTU7TL.P4.E11 Aspen leaf cDNA Librar... 180 3e-043
gb|CB239511.1|CB239511 RSH12F10 two-month-old roots from cl... 149 9e-034
gb|AJ778476.1|AJ778476 AJ778476 Populus euphratica cambium ... 149 9e-034
gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus tr... 137 4e-030
gb|CA931952.1|CA931952 MTU4TA.P25.A10 Aspen apex cDNA Libra... 135 1e-029
gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal libr... 131 2e-028
gb|AY055724.2| Populus tremuloides cellulose synthase (CesA... 127 3e-027
gb|AJ771596.1|AJ771596 AJ771596 Populus euphratica root 3-6... 125 1e-026
gb|CA932078.1|CA932078 MTU4TA.P26.F03 Aspen apex cDNA Libra... 119 8e-025
gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus ... 119 8e-025
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 113 5e-023
gb|CK320732.1|CK320732 X9SP01b11 Populus stem seasonal libr... 109 8e-022
gb|DT476519.1|DT476519 WS01229.B21_N17 PT-GT-FL-A-3 Populus... 107 3e-021
gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus... 107 3e-021
gb|CN549808.1|CN549808 GQ0241.B3_H11 GQ024 Populus trichoca... 103 5e-020
gb|CV244615.1|CV244615 WS0255.B21_C09 PT-MB-N-A-15 Populus ... 103 5e-020
gb|DT489371.1|DT489371 WS02542.B21_A18 PT-MB-N-A-15 Populus... 103 5e-020
gb|CF235713.1|CF235713 PtaJXT0026B7B0703 Poplar cDNA librar... 101 2e-019
gb|DT500162.1|DT500162 PX0011.BR_G15 PT-X-FL-A-1 Populus tr... 101 2e-019
gb|DT509821.1|DT509821 WS02424.BR_N10 PTxD-ICC-N-A-14 Popul... 101 2e-019
gb|CF233490.1|CF233490 PtaJXO0024C12C1206 Poplar cDNA libra... 100 8e-019
gb|DT493580.1|DT493580 WS0111.BR_M17 PT-P-FL-A-2 Populus tr... 100 8e-019
gb|DN495393.1|DN495393 N041C05.5pR Populus bark cDNA librar... 98 3e-018
gb|CA927446.1|CA927446 MTU6CR.P9.B04 Aspen root cDNA Librar... 96 1e-017
gb|CF227502.1|CF227502 PtaD6G2G0214 Poplar cDNA library fro... 96 1e-017
gb|BU815407.1|BU815407 N041C05 Populus bark cDNA library Po... 94 5e-017
gb|BU895617.1|BU895617 X028D07 Populus wood cDNA library Po... 94 5e-017
gb|CN519879.1|CN519879 GQ0108.B3_I06 GQ010 Populus trichoca... 94 5e-017
gb|DV465848.1|DV465848 MTUNUL1.P43.H11 NUL Populus fremonti... 94 5e-017
gb|DV466748.1|DV466748 MTUNUL1.P9.G02 NUL Populus fremontii... 94 5e-017
gb|AY573574.1| Populus tremula x Populus tremuloides cellul... 94 5e-017
gb|CF232701.1|CF232701 PtaJXO0014G1G0113 Poplar cDNA librar... 92 2e-016
gb|CF232837.1|CF232837 PtaJXO0016D5D0507 Poplar cDNA librar... 90 7e-016
gb|CV242542.1|CV242542 WS02515.B21_F16 PT-MB-N-A-15 Populus... 90 7e-016
gb|CV268371.1|CV268371 WS0205.B21_E18 PTxN-IB-N-A-11 Populu... 90 7e-016
gb|AY162180.1| Populus tremuloides cellulose synthase (CesA... 90 7e-016
gb|CA930801.1|CA930801 MTU2TA.P10.D08 Aspen apex cDNA Libra... 88 3e-015
gb|AY573572.1| Populus tremula x Populus tremuloides cellul... 88 3e-015
gb|AJ777820.1|AJ777820 AJ777820 Populus euphratica root 3-6... 86 1e-014
gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA libra... 84 5e-014
gb|BP924070.1|BP924070 BP924070 full-length enriched poplar... 84 5e-014
gb|AF072131.1|AF072131 Populus tremuloides secondary xylem ... 84 5e-014
gb|AY573573.2| Populus tremula x Populus tremuloides cellul... 84 5e-014
gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1)... 84 5e-014
gb|CX169886.1|CX169886 G10_69-94_14.ab1 leaf inoculated wit... 82 2e-013
gb|AI163338.1|AI163338 A040P09U Hybrid aspen plasmid librar... 78 3e-012
gb|BI127228.1|BI127228 G057P27Y Populus cambium cDNA librar... 78 3e-012
gb|BI131187.1|BI131187 G116P69Y Populus cambium cDNA librar... 78 3e-012
gb|CA934196.1|CA934196 MTU3TS.P4.D08 Aspen stem cDNA Librar... 78 3e-012
gb|CV283069.1|CV283069 WS0186.B21_F15 PTxD-IL-N-A-9 Populus... 78 3e-012
gb|DT470299.1|DT470299 WS01920.C21_H07 PT-DX-N-A-10 Populus... 78 3e-012
gb|AY330166.1| Populus tremuloides CesA7A-like mRNA, partia... 78 3e-012
gb|BU817734.1|BU817734 UA20CPD09 Populus tremula cambium cD... 74 4e-011
gb|AJ776091.1|AJ776091 AJ776091 Populus euphratica root 3-6... 74 4e-011
gb|CV229552.1|CV229552 WS01913.B21_K14 PT-DX-N-A-10 Populus... 74 4e-011
gb|CF229283.1|CF229283 PtaXM0023E4E0410 Poplar cDNA library... 70 7e-010
gb|CK097446.1|CK097446 UB51DPD11.3pR Populus active cambium... 70 7e-010
gb|CV262834.1|CV262834 WS0202.B21_K05 PTxN-IB-N-A-11 Populu... 70 7e-010
gb|CV282433.1|CV282433 WS0184.B21_J19 PTxD-IL-N-A-9 Populus... 70 7e-010
gb|CK102947.1|CK102947 G097P01.5pR Populus tension wood cDN... 68 3e-009
gb|AF081534.1|AF081534 Populus x canescens cellulose syntha... 68 3e-009
gb|CN524029.1|CN524029 GQ015M07.T3_H06 GQ015 Populus tricho... 66 1e-008
gb|CN524680.1|CN524680 GQ015M13.T3_D10 GQ015 Populus tricho... 66 1e-008
gb|CK318639.1|CK318639 X9P01f01 Populus stem seasonal libra... 66 1e-008
gb|CK319325.1|CK319325 X9P09e02 Populus stem seasonal libra... 66 1e-008
gb|CV225435.1|CV225435 WS0161.B21_G07 PT-DX-A-7 Populus tri... 66 1e-008
gb|CV225888.1|CV225888 WS0162.B21_K19 PT-DX-A-7 Populus tri... 66 1e-008
gb|CV226017.1|CV226017 WS0163.B21_A20 PT-DX-A-7 Populus tri... 66 1e-008
gb|CV226195.1|CV226195 WS0163.B21_J02 PT-DX-A-7 Populus tri... 66 1e-008
gb|CV227633.1|CV227633 WS0167.B21_M03 PT-DX-A-7 Populus tri... 66 1e-008
gb|CV273968.1|CV273968 WS01712.B21_M13 PTxD-NR-A-8 Populus ... 66 1e-008
gb|CK100621.1|CK100621 C057P32.5pR Populus strain T89 leave... 64 4e-008
gb|CV227790.1|CV227790 WS0168.B21_D13 PT-DX-A-7 Populus tri... 64 4e-008
gb|AY573575.1| Populus tremula x Populus tremuloides cellul... 64 4e-008
gb|BU870116.1|BU870116 Q008I09 Populus flower cDNA library ... 62 2e-007
gb|CA926289.1|CA926289 MTU6CR.P13.C05 Aspen root cDNA Libra... 62 2e-007
gb|CK092703.1|CK092703 G092P25.3pR Populus tension wood cDN... 62 2e-007
gb|CK102806.1|CK102806 G092P25.5pR Populus tension wood cDN... 62 2e-007
gb|CK107777.1|CK107777 G057P27 Populus tension wood cDNA li... 62 2e-007
gb|CK111062.1|CK111062 Q008E05 Populus dormant bud cDNA lib... 62 2e-007
gb|AF527387.1| Populus tremuloides xylem-specific cellulose... 62 2e-007
gb|AY573571.1| Populus tremula x Populus tremuloides cellul... 62 2e-007
gb|CN524693.1|CN524693 GQ015M08.T3_H02 GQ015 Populus tricho... 60 7e-007
gb|AF417485.1| Populus tremuloides cellulose synthase (CesA... 60 7e-007
gb|BU894361.1|BU894361 X008A10 Populus wood cDNA library Po... 58 3e-006
gb|BU894931.1|BU894931 X017A07 Populus wood cDNA library Po... 58 3e-006
gb|BU895092.1|BU895092 X019B09 Populus wood cDNA library Po... 58 3e-006
gb|CK093129.1|CK093129 G109P08.3pR Populus tension wood cDN... 58 3e-006
gb|CN520281.1|CN520281 GQ0105.B3_A14 GQ010 Populus trichoca... 58 3e-006
gb|CN549469.1|CN549469 GQ0241.B3_B20 GQ024 Populus trichoca... 58 3e-006
gb|CV232087.1|CV232087 WS0196.B21_I06 PT-DX-N-A-10 Populus ... 58 3e-006
gb|AI162302.1|AI162302 A015P47U Hybrid aspen plasmid librar... 56 1e-005
gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA librar... 56 1e-005
gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Po... 56 1e-005
gb|CF227669.1|CF227669 PtaXM0003A12A1202 Poplar cDNA librar... 56 1e-005
gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA librar... 56 1e-005
gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA librar... 56 1e-005
gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA libra... 56 1e-005
gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDN... 56 1e-005
gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichoca... 56 1e-005
gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-... 56 1e-005
gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-... 56 1e-005
gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-... 56 1e-005
gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium ... 56 1e-005
gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus... 56 1e-005
gb|CV272431.1|CV272431 WS0157.B21_K08 PTxN-IB-A-6 Populus t... 54 4e-005
gb|DT469819.1|DT469819 WS01918.C21_P21 PT-DX-N-A-10 Populus... 54 4e-005
gb|DT523570.1|DT523570 WS02040.B21_A19 PTxN-IB-N-A-11 Popul... 54 4e-005
gb|CN518195.1|CN518195 GQ0092.B3_P04 GQ009 Populus trichoca... 52 2e-004
gb|CV234604.1|CV234604 WS01215.B21.1_I11 PT-GT-FL-A-3 Popul... 52 2e-004
gb|BP923622.1|BP923622 BP923622 full-length enriched poplar... 52 2e-004
gb|BP927588.1|BP927588 BP927588 full-length enriched poplar... 52 2e-004
gb|DT475055.1|DT475055 WS0125.BR_N16 PT-GT-FL-A-3 Populus t... 52 2e-004
gb|DT475135.1|DT475135 WS0126.BR_C03 PT-GT-FL-A-3 Populus t... 52 2e-004
gb|BI128229.1|BI128229 G072P90Y Populus cambium cDNA librar... 50 6e-004
gb|BI132326.1|BI132326 G135P19Y Populus cambium cDNA librar... 50 6e-004
gb|BU879114.1|BU879114 V056B09 Populus flower cDNA library ... 50 6e-004
gb|CA926496.1|CA926496 MTU6CR.P15.F11 Aspen root cDNA Libra... 50 6e-004
gb|CA926817.1|CA926817 MTU6CR.P1.E04 Aspen root cDNA Librar... 50 6e-004
gb|CF232524.1|CF232524 PtaJXO0011E3E0309 Poplar cDNA librar... 50 6e-004
gb|CF233341.1|CF233341 PtaJXO0022B5B0503 Poplar cDNA librar... 50 6e-004
gb|CF235304.1|CF235304 PtaJXT0021C1C0105 Poplar cDNA librar... 50 6e-004
gb|CK088642.1|CK088642 A064P24.3pR Hybrid aspen plasmid lib... 50 6e-004
gb|CV268970.1|CV268970 WS0206.B21_P09 PTxN-IB-N-A-11 Populu... 50 6e-004
gb|AI164546.1|AI164546 A064p24u Hybrid aspen plasmid librar... 48 0.003
gb|BI127743.1|BI127743 G065P23Y Populus cambium cDNA librar... 48 0.003
gb|BI128874.1|BI128874 G082P82Y Populus cambium cDNA librar... 48 0.003
gb|CF228296.1|CF228296 PtaXM0011D10D1008 Poplar cDNA librar... 48 0.003
gb|CF232376.1|CF232376 PtaJXO0009G11G1113 Poplar cDNA libra... 48 0.003
gb|CK092951.1|CK092951 G101P46.3pR Populus tension wood cDN... 48 0.003
gb|CK098592.1|CK098592 A020P56.5pR Hybrid aspen plasmid lib... 48 0.003
gb|CN520055.1|CN520055 GQ0105.B3_H23 GQ010 Populus trichoca... 48 0.003
gb|CV252662.1|CV252662 PX0015.B21_I21 PT-X-FL-A-1 Populus t... 48 0.003
gb|BP931353.1|BP931353 BP931353 full-length enriched poplar... 48 0.003
gb|BP935110.1|BP935110 BP935110 full-length enriched poplar... 48 0.003
gb|DN485869.1|DN485869 N041C05.3pR Populus bark cDNA librar... 48 0.003
gb|AY330165.1| Populus tremuloides CesA5A-like mRNA, partia... 48 0.003
gb|BI128887.1|BI128887 G083P04Y Populus cambium cDNA librar... 44 0.040
gb|BI131891.1|BI131891 G127P18Y Populus cambium cDNA librar... 44 0.040
gb|CF229187.1|CF229187 PtaXM0022D10D1008 Poplar cDNA librar... 44 0.040
gb|CF232848.1|CF232848 PtaJXO0016E6E0610 Poplar cDNA librar... 44 0.040
gb|CF235000.1|CF235000 PtaJXT0017F7F0711 Poplar cDNA librar... 44 0.040
gb|CK092990.1|CK092990 G103P13.3pR Populus tension wood cDN... 44 0.040
gb|CK318831.1|CK318831 X9P03h01 Populus stem seasonal libra... 44 0.040
gb|CV245000.1|CV245000 WS0256.B21_D13 PT-MB-N-A-15 Populus ... 44 0.040
gb|DN493622.1|DN493622 G071P10.5pR Populus tension wood cDN... 44 0.040
gb|AY162184.1| Populus tremuloides cellulose synthase-like ... 44 0.040
gb|AI161715.1|AI161715 A005P67U Hybrid aspen plasmid librar... 42 0.16
gb|AI162363.1|AI162363 A016P42U Hybrid aspen plasmid librar... 42 0.16
gb|AI162413.1|AI162413 A017P22U Hybrid aspen plasmid librar... 42 0.16
gb|AI166149.1|AI166149 B00927U Hybrid aspen plasmid library... 42 0.16
gb|BI124295.1|BI124295 I041P24P Populus leaf cDNA library P... 42 0.16
gb|BI129778.1|BI129778 G095P49Y Populus cambium cDNA librar... 42 0.16
gb|BI131900.1|BI131900 G127P28Y Populus cambium cDNA librar... 42 0.16
gb|BI132304.1|BI132304 G135P11Y Populus cambium cDNA librar... 42 0.16
gb|BU884732.1|BU884732 R014G08 Populus root cDNA library Po... 42 0.16
gb|BU896705.1|BU896705 X044E08 Populus wood cDNA library Po... 42 0.16
gb|BU897991.1|BU897991 X073A11 Populus wood cDNA library Po... 42 0.16
gb|CF216242.1|CF216242 PT1060 Hybrid aspen xylem up-regulat... 42 0.16
gb|CF216327.1|CF216327 PT1158 Hybrid aspen xylem up-regulat... 42 0.16
gb|CF229783.1|CF229783 PtaXM0029F3F0311 Poplar cDNA library... 42 0.16
gb|CF232642.1|CF232642 PtaJXO0013H5H0515 Poplar cDNA librar... 42 0.16
gb|CF236377.1|CF236377 PtaJXT2B10B1004 Poplar cDNA library ... 42 0.16
gb|CK087638.1|CK087638 A016P42.3pR Hybrid aspen plasmid lib... 42 0.16
gb|CK087778.1|CK087778 A020P56.3pR Hybrid aspen plasmid lib... 42 0.16
gb|CK095918.1|CK095918 UA35CPG12.3pR Populus dormant cambiu... 42 0.16
gb|CK098492.1|CK098492 A016P42.5pR Hybrid aspen plasmid lib... 42 0.16
gb|CK116304.1|CK116304 B009P27 Hybrid aspen plasmid library... 42 0.16
gb|CK319336.1|CK319336 X9P09f03 Populus stem seasonal libra... 42 0.16
gb|AJ778868.1|AJ778868 AJ778868 Populus euphratica cambium ... 42 0.16
gb|CV234431.1|CV234431 WS01214.B21_O11 PT-GT-FL-A-3 Populus... 42 0.16
gb|CV275712.1|CV275712 WS0177.B21_F22 PTxD-NR-A-8 Populus t... 42 0.16
gb|CX175098.1|CX175098 F03_69-34_11.ab1 leaf inoculated wit... 42 0.16
gb|CX657115.1|CX657115 PO02060G08 Poplar SC cDNA library Po... 42 0.16
gb|DT469228.1|DT469228 WS01917.C21_C12 PT-DX-N-A-10 Populus... 42 0.16
gb|DT487840.1|DT487840 WS02534.B21_M24 PT-MB-N-A-15 Populus... 42 0.16
gb|AF417486.1| Populus tremuloides cellulose synthase-like ... 42 0.16
>gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800003H02F1, mRNA sequence
Length = 713
Score = 436 bits (220), Expect = e-120
Identities = 587/708 (82%), Gaps = 1/708 (0%)
Strand = Plus / Minus
Query: 1798 atgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatatcga 1857
||||| |||||||| |||| |||||||||||||||||| || || ||||| |||||||||
Sbjct: 712 atgccgtccagacccttcaagttgatatcaaagaaaacaatattgcgattggcatatcga 653
Query: 1858 tcgtgcaagtcaatgccatcaaat-ctctgtggaaattgtacataacaagttttccttcc 1916
|||||||||||||| |||||||| | ||||| || |||||||| || || ||| ||||
Sbjct: 652 tcgtgcaagtcaataccatcaaaaacgttgtgggaactgtacatagcatgtcttctttcc 593
Query: 1917 tagagccggatccatcatgaagcacattgcttctctaagagctttgctgctattgaagta 1976
|| || ||||||||||| ||||| |||||| | |||||||||||| ||||||||||
Sbjct: 592 atatgcagggtccatcatgaaacacatggcttcttttagagctttgctgttattgaagta 533
Query: 1977 atggtcgcaatccacattgagaagataggcaccatttgtcagcacagcagatacacgaat 2036
|| || ||||| || || ||||||||||||||||| ||||| ||||| || || |||||
Sbjct: 532 gtgatcacaatcgacgttcagaagataggcaccattggtcagtacagctgaaactcgaat 473
Query: 2037 cagcgcattcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgaga 2096
||| ||||||||||| || || |||||||||||||| || || |||||||||||||||||
Sbjct: 472 cagtgcattcattgctccggctttcttgtgatgctggaatccaggtctcttttcacgaga 413
Query: 2097 gacatagacaagacgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaa 2156
||||| |||||||| |||| |||||||||||| || |||||||| |||||||| || ||
Sbjct: 412 aacatatacaagacgaggtagctcatttccatctgtatcgagccccccactgtgacctaa 353
Query: 2157 gaaaacctgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatc 2216
||| ||||| ||||| || || || ||||| |||||||| |||||||| | |||||| ||
Sbjct: 352 gaacacctggatcattcctgggtgatccctgggattatttccaggccacggagttccgtc 293
Query: 2217 agccatggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattct 2276
||| ||||| || ||||| |||| ||||| |||||||||||||| |||||||| |
Sbjct: 292 ctgcattgtccaaccttcttctggcatcttctgagctttggcaacaagagcattgatccg 233
Query: 2277 tactttgaattcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttg 2336
|| |||||||||||||| || ||||||||||| || | || || ||||| ||||| ||
Sbjct: 232 caccttgaattcttcatattctctcttcattgctcggcgctctttcacaaaagaaggctg 173
Query: 2337 aattttgtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttc 2396
|| ||||||||||| ||||| || ||||| | ||| ||||| || || || || || ||
Sbjct: 172 tatcttgtccttcagataatcaatcttttgggaaaaataaaactcgggggccctgggctc 113
Query: 2397 aatattgtgcttcttacaaaagggaacccactttctagcaaattctgcggtttctgagag 2456
||||||||||||||| || || || |||||||| || ||||| ||||| ||||| || ||
Sbjct: 112 aatattgtgcttcttgcagaaaggcacccacttccttgcaaactctgcagtttcagaaag 53
Query: 2457 agactcaaaagtcagcatagctgaaccatcatcagaaacatagcatga 2504
| |||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct: 52 ggcctcaaatgtcaacatagctgaaccatcatctgaaacatagcatga 5
>gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800009G06F1, mRNA sequence
Length = 735
Score = 422 bits (213), Expect = e-116
Identities = 593/717 (82%), Gaps = 2/717 (0%)
Strand = Plus / Minus
Query: 1798 atgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatatcga 1857
||||| |||||||| ||| |||||| ||||||||||| || || ||||| |||||||||
Sbjct: 734 atgccgtccagacccctcaagttgat-tcaaagaaaacaatattgcgattggcatatcga 676
Query: 1858 tcgtgcaagtcaatgccatcaaatctctgtggaaattgtacataacaagttttccttcct 1917
||||||||||||||||||||||| | ||||| || |||||||| | || ||| ||||
Sbjct: 675 tcgtgcaagtcaatgccatcaaaacgttgtgggaactgtacatagcctgtcttctttcca 616
Query: 1918 agagccggatccatcatgaagc-acattgcttctctaagagctttgctgctattgaagta 1976
|| || ||||||||||| | |||| |||||| | |||||||||||| ||||||||||
Sbjct: 615 tatgcagggtccatcatgaaacnacatggcttcttttagagctttgctgttattgaagta 556
Query: 1977 atggtcgcaatccacattgagaagataggcaccatttgtcagcacagcagatacacgaat 2036
|| || ||||| || || ||||||||||||||||| ||||| ||||| || || |||||
Sbjct: 555 gtgatcacaatcgacgttcagaagataggcaccattggtcagtacagctgaaactcgaat 496
Query: 2037 cagcgcattcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgaga 2096
||| ||||||||||| || || |||||||||||||| || || |||||||||||||||||
Sbjct: 495 cagtgcattcattgctccggctttcttgtgatgctggaatccaggtctcttttcacgaga 436
Query: 2097 gacatagacaagacgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaa 2156
||||| |||||||| |||| |||||||||||| || |||||||| |||||||| || ||
Sbjct: 435 aacatatacaagacgaggtagctcatttccatctgtatcgagccccccactgtgacctaa 376
Query: 2157 gaaaacctgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatc 2216
||| ||||| ||||| || || || ||||| |||||||| |||||||| | |||||||||
Sbjct: 375 gaacacctggatcattcctgggtgatccctgggattatttccaggccacggagttccatc 316
Query: 2217 agccatggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattct 2276
||| ||||| || ||||| |||| ||||| |||||||||||||| |||||||| |
Sbjct: 315 ctgcattgtccaaccttcttctggcatcttctgagctttggcaacaagagcattgatccg 256
Query: 2277 tactttgaattcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttg 2336
|| |||||||||||||| || ||||||||||| || | || || ||||| ||||| ||
Sbjct: 255 caccttgaattcttcatattctctcttcattgctcggcgctctttcacaaaagaaggctg 196
Query: 2337 aattttgtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttc 2396
|| ||||||||||| ||||| || ||||| | ||| ||||| || || || || || ||
Sbjct: 195 tatcttgtccttcagataatcaatcttttgggaaaaataaaactcgggggccctgggctc 136
Query: 2397 aatattgtgcttcttacaaaagggaacccactttctagcaaattctgcggtttctgagag 2456
||||||||||||||| || || || |||||||| || ||||| ||||| ||||| || ||
Sbjct: 135 aatattgtgcttcttgcagaaaggcacccacttccttgcaaactctgcagtttcagaaag 76
Query: 2457 agactcaaaagtcagcatagctgaaccatcatcagaaacatagcatgacactttgtc 2513
| ||||| |||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 75 ggcttcaaatgtcaacatagctgaaccatcatctgaaacatagcatgatactttgtc 19
>gb|AY162181.1| Populus tremuloides cellulose synthase (CesA4) mRNA, complete cds
Length = 3640
Score = 410 bits (207), Expect = e-112
Identities = 590/715 (82%), Gaps = 2/715 (0%)
Strand = Plus / Minus
Query: 1698 aatgtttggctccagatcagcttcagtcaaaacaggatcgtatccatacaaagcctgtct 1757
||||||||| |||| ||| | || |||||||| ||||| || ||||||| || || |
Sbjct: 2013 aatgtttggttccaaatcttcctctgtcaaaactggatcataaccatacagggcttgccg 1954
Query: 1758 attgaaacagcatcctgttcccacgtaaactggaccctgaatgccatccagacctttcat 1817
||||||||||| || ||||| || || || || ||||| ||||| |||||||| ||||
Sbjct: 1953 gttgaaacagcaaccagttccaacatacacaggcccctggatgccgtccagacccttcaa 1894
Query: 1818 gttgatatcaaagaaaactatgttccgattagcatatcgatcgtgcaagtcaatgccatc 1877
|||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||
Sbjct: 1893 gttgatatcaaagaaaacaatattgcgattggcatatcgatcgtgcaagtcaatgccatc 1834
Query: 1878 aaatctctgtggaaattgtacataacaagttttccttcc-tagagccggatccatcatga 1936
||| | ||||| || |||| ||| || || ||| |||| ||| || || ||||||||||
Sbjct: 1833 aaaacgttgtgggaactgtatatagcatgtcttctttccatag-gcagggtccatcatga 1775
Query: 1937 agcacattgcttctctaagagctttgctgctattgaagtaatggtcgcaatccacattga 1996
| ||||| |||||| |||||||||||||| |||||||||| || || ||||| || || |
Sbjct: 1774 aacacatggcttctttaagagctttgctgttattgaagtagtgatcacaatcgacgttca 1715
Query: 1997 gaagataggcaccatttgtcagcacagcagatacacgaatcagcgcattcattgcaccag 2056
|||||||||||||||| ||||| ||||| || || |||||||| ||||||||||| || |
Sbjct: 1714 gaagataggcaccattggtcagtacagctgaaactcgaatcagtgcattcattgctccgg 1655
Query: 2057 ccttcttgtgatgctgaaagcctggtctcttttcacgagagacatagacaagacgtggta 2116
| |||||||||||||| || || ||||||||||||||||| ||||| |||||||| ||||
Sbjct: 1654 ctttcttgtgatgctggaatccaggtctcttttcacgagaaacatatacaagacgaggta 1595
Query: 2117 actcatttccatcagtgtcgagcccaccactgtgccccaagaaaacctgaatcatgccag 2176
|||||||||||| || |||||||| |||||||| || ||||| ||||||||||| || |
Sbjct: 1594 gctcatttccatccgtatcgagccccccactgtgacctaagaacacctgaatcattcctg 1535
Query: 2177 gatggtccctaggattattcccaggccatgcagttccatcagccatggtccacccctctt 2236
| || ||||| |||||||| |||||||||| ||||||||| ||| ||||| || ||||
Sbjct: 1534 ggtgatccctgggattatttccaggccatggagttccatcctgcattgtccaaccttctt 1475
Query: 2237 caggcactttctgtgctttggcaacaagggcattgattcttactttgaattcttcatact 2296
| |||| || || |||||||||||||| |||||||| | || |||||||||||||| |
Sbjct: 1474 ctggcatcttttgagctttggcaacaagagcattgatccgcaccttgaattcttcatatt 1415
Query: 2297 ccctcttcattgcgcgtctttccttaacaaatgaaggttgaattttgtccttcaggtaat 2356
| || |||||||| || | || || ||||| ||||| || || ||||||| || ||||
Sbjct: 1414 ctcttttcattgctcggcgctctttcacaaaagaaggctgtatcttgtcctctagataat 1355
Query: 2357 ctattttttgagcaaagtaaaattctggagctcttggttcaatattgtgcttctt 2411
| || ||||| ||||| ||||| || || || || || |||||||||||||||||
Sbjct: 1354 ccatcttttgggcaaaataaaactcaggggccctaggctcaatattgtgcttctt 1300
Score = 216 bits (109), Expect = 5e-054
Identities = 310/377 (82%)
Strand = Plus / Minus
Query: 2461 tcaaaagtcagcatagctgaaccatcatcagaaacatagcatgacactttgtcaacaggg 2520
||||| |||| |||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 1250 tcaaatgtcaacatagctgaaccatcatctgaaacatagcatgatactttgtcgacaggg 1191
Query: 2521 taatccacagaaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaat 2580
||||| |||| |||||||||||| |||||||| ||||| | | |||||||| ||||
Sbjct: 1190 taatcaacagcaagaatggacaacacagtgtttgctgttacaataggaggttctttcatg 1131
Query: 2581 ggatccactgtactgacgaagacatcaatgggagccagctgtgatggctctccctctcta 2640
|||||||||||||| || |||| ||||| ||||| | ||||||||| ||||| || | |
Sbjct: 1130 ggatccactgtactaacaaagatgtcaataggagctaactgtgatggttctccatcacga 1071
Query: 2641 tcatacctcaatgcaagcctgtcaagatatgtctcacggttgattggataccattttggg 2700
||||| || ||||| |||||||| || || ||||| || ||||| || |||||||||
Sbjct: 1070 tcatatcttaatgctagcctgtcgaggtaagtctcgcgattgataggcatccattttgga 1011
Query: 2701 aactgatctagaagccaagacaaggcaaaccagacctcgcagataacagatactagccat 2760
|||||||| |||||||| |||||||||||||| | ||| |||||||||||| | |||
Sbjct: 1010 aactgatccagaagccaggacaaggcaaaccaaatctcacagataacagatgtcaaccac 951
Query: 2761 aatccataagcatcacgcactggatgactgacacgatactggaagaagaagcacaggatg 2820
|| || || ||||| |||||||||| | |||||||| || |||||||| | || ||
Sbjct: 950 aaaccgtatgcatctttcactggatgagttacacgatattgtaagaagaaccccaaaata 891
Query: 2821 ataagacggagaatgat 2837
|||||||| ||||||||
Sbjct: 890 ataagacgcagaatgat 874
Score = 192 bits (97), Expect = 7e-047
Identities = 427/537 (79%)
Strand = Plus / Minus
Query: 498 cacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttgg 557
|||||| ||||||||||| || || ||||| || || |||||||| ||||| ||||||||
Sbjct: 3216 cacccatagcaaggagaaaatggaggcaaggagaatagaccagacgatgacaattgttgg 3157
Query: 558 tgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccca 617
|| || || |||| |||| | |||||||||||| || || | |||| || |||||
Sbjct: 3156 cgtacgattttgccgacccagcaaacccttgaggaaaggatacaaatgggcaatgaccca 3097
Query: 618 gatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggc 677
|| | ||||| ||||| |||||||| |||||||| || ||||| |||||||| |||||
Sbjct: 3096 aatagcaaagaagagcttgccaaagagaggaccccatgactggtatccactgtttatggc 3037
Query: 678 atacgaaattcctgccaccattccgaccaggttaatgacaagaacagtggtcggaggaat 737
||| || | || ||||| || || |||| ||| | |||| || ||||| ||||| ||
Sbjct: 3036 ataggacacaccagccacaatacccaccatgtttagtacaatgactgtggttggagggat 2977
Query: 738 gagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgc 797
||| | | ||||| ||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 2976 gagaagagatgtccatttgaacacataaagctctgcaaaatccccatcttcatcagatgc 2917
Query: 798 ctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaa 857
|||||| || || ||||||||||||||||| || || | ||| |||| || || || ||
Sbjct: 2916 ctttgaagtgacagtgaagttggtatcaatacctgcaagcaccttcaaaagtccttgaaa 2857
Query: 858 cactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcatttctccacca 917
|| || |||||||| || || || |||||||| ||||| || || ||||| ||||||||
Sbjct: 2856 gacggcaaagagatgagctgatgtaccaccaatgacccagaattgttcattcctccacca 2797
Query: 918 atcttcaatgccaacaccgctccatctaagctccaatataccagtggcaaaaatggaggc 977
|||||||| ||||| || |||||||||||||| | ||| ||||| ||||||||||||
Sbjct: 2796 gtcttcaataccaactccactccatctaagctcaagtattccagtagcaaaaatggagat 2737
Query: 978 gaaaagaagaatgaagaacatcccagcataattgctaatctcaggaatgataaattt 1034
|||||| |||||||| |||| | ||||| || || ||||||||||| ||||||||
Sbjct: 2736 gaaaagcagaatgaaccacatgctggcatagttacttatctcaggaataataaattt 2680
Score = 125 bits (63), Expect = 1e-026
Identities = 245/303 (80%), Gaps = 2/303 (0%)
Strand = Plus / Minus
Query: 1123 agcctctccaaaagcttcaatcgtccattgtaaccataccagataggacaatgtctacta 1182
||||||||||||||||| |||| ||||||||| |||||||| || || ||||| || ||
Sbjct: 2591 agcctctccaaaagctttaatcttccattgtatccataccatatggggcaatgcctgctc 2532
Query: 1183 agcagaatttccactga-cccaagagcccaacggagcacctgattaagacgatcggaaag 1241
|| | ||| || | || |||||| ||||| || || ||||| || | |||||| |||||
Sbjct: 2531 agtaaaatctcaatagatcccaag-gcccatcgaagaacctggttcaaacgatcagaaag 2473
Query: 1242 attgattggtgcagaacccttgaaacaaggtcgtggtggcatgcagtagattgattgcca 1301
||| || || ||||| ||||| || || || || |||||||| ||||||||| |||
Sbjct: 2472 attaataggagcagaccccttaaatgctgggcgaggaggcatgcaatagattgatatcca 2413
Query: 1302 gccccttgcatgcattttaaacccagtcagaatatcctccgttactgaaccatagatcca 1361
|| | |||||||| ||||||||||||| |||||| || || || || |||||||||||
Sbjct: 2412 accacgagcatgcatcttaaacccagtcaaaatatcttctgtaacagacccatagatcca 2353
Query: 1362 gccaatctcttttccccattcagttttgtcctcatatccacaactgatgacatggatagc 1421
||||||||||| |||||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 2352 tccaatctctttggcccattcagtcttgtcttcatatccacagctaataacatggatagc 2293
Query: 1422 ttc 1424
|||
Sbjct: 2292 ttc 2290
Score = 77.8 bits (39), Expect = 3e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 2989 tgcatcatatttttgtcctgtttaaccctccagctctcaactctttccttccagtcaaca 3048
||||| ||||||||||||||||||| | |||| | ||||| || ||||||||||||| |
Sbjct: 725 tgcatgatatttttgtcctgtttaagcttccaaccttcaaccctctccttccagtcaata 666
Query: 3049 ctattaagcccataggaattcaagtccttcgaggggtccacaatcctcacaggaactgg 3107
| ||| ||||| |||||||||||||| || || |||||||| || |||||||||||
Sbjct: 665 ttgccaaggccataagaattcaagtcctttgacggatccacaattctaacaggaactgg 607
Score = 65.9 bits (33), Expect = 1e-008
Identities = 144/181 (79%)
Strand = Plus / Minus
Query: 3310 ttgaattcattgtctaggtcatcaacatcttcctcatcctcatcaccatgaactcgaggg 3369
||||| ||||| ||||| ||||||||||| || ||||||||||| |||| ||||||||
Sbjct: 374 ttgaactcattctctagatcatcaacatcatcttcatcctcatctccatccactcgagga 315
Query: 3370 ctacctttctgtctcttgtatctagtcttgcactgggggcagcattggttcccctccttg 3429
|| ||||| || || || |||||||| ||||| ||||| | || |||| || ||
Sbjct: 314 ctccctttgtgccttcgatacctagtcttacactgagggcaagactgagtcccatctttt 255
Query: 3430 cgctcatactcatagcatgggcggcagacagggaaggcacactcattgcaggcaacaaag 3489
| ||||||||| || || || ||||| || ||||| |||||||| ||||| |||||||||
Sbjct: 254 ctctcatactcgtaacaaggacggcaaactgggaaagcacactcgttgcaagcaacaaag 195
Query: 3490 a 3490
|
Sbjct: 194 a 194
Score = 48.1 bits (24), Expect = 0.003
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 1529 tctgggacataagcactgacctttcatcctcgtaaccttcaataccctcttcgatgtctt 1588
|||| ||||||||| ||||| ||||| || || ||||||| |||||| || ||||| |
Sbjct: 2188 tctgcgacataagcgaggacctctcatcatcatatccttcaacaccctcctcaatgtcct 2129
Query: 1589 ccatattgaagatggg 1604
|||||||||| |||||
Sbjct: 2128 ccatattgaaaatggg 2113
Score = 42.1 bits (21), Expect = 0.16
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 2883 acggctcaaaggtagccgtgcatcatcaaccatttgcatatnttctccatttgagccagt 2942
||||||||||||| | || ||||||||| ||||||| | | ||||||||||| |||||
Sbjct: 828 acggctcaaaggttgtcgagcatcatcagccatttgaagttcatctccatttgaaccagt 769
>gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 609
Score = 379 bits (191), Expect = e-103
Identities = 488/587 (83%)
Strand = Plus / Minus
Query: 1927 tccatcatgaagcacattgcttctctaagagctttgctgctattgaagtaatggtcgcaa 1986
|||||||||| ||||| |||||| |||||||||||||| |||||||||| || || |||
Sbjct: 597 tccatcatgacacacatggcttctttaagagctttgctgttattgaagtagtgatcacaa 538
Query: 1987 tccacattgagaagataggcaccatttgtcagcacagcagatacacgaatcagcgcattc 2046
|| || || ||||||||||||||||| ||||| ||||| || || |||||||| ||||||
Sbjct: 537 tcgacgttcagaagataggcaccattggtcagtacagctgaaactcgaatcagtgcattc 478
Query: 2047 attgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacatagaca 2106
||||| || || |||||||||||||| || || || |||||||||||||| ||||| |||
Sbjct: 477 attgctccggctttcttgtgatgctggaatccaggcctcttttcacgagatacatataca 418
Query: 2107 agacgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaagaaaacctga 2166
||||| |||| |||||||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 417 agacgaggtagctcatttccatccgtatcgagccccccgctgtgacctaagaacacctgg 358
Query: 2167 atcatgccaggatggtccctaggattattcccaggccatgcagttccatcagccatggtc 2226
||||| || || || ||||| |||||||| |||||||||| ||||||||| ||| |||
Sbjct: 357 atcattcctgggtgatccctgggattatttccaggccatggagttccatcctgcattgtc 298
Query: 2227 cacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttactttgaat 2286
|| || ||||| |||| ||||| |||||||||||||| |||||||| | || ||||||
Sbjct: 297 caaccttcttctggcatcttctgagctttggcaacaagagcattgatccgcaccttgaat 238
Query: 2287 tcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttgaattttgtcc 2346
|||||||| || ||||||||||| || | || || ||||| ||||| || || ||||||
Sbjct: 237 tcttcatattctctcttcattgctcggcgctctttcacaaaagaaggctgtatcttgtcc 178
Query: 2347 ttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatattgtgc 2406
||||| ||||| || ||||| ||||| ||||| || || || || || ||||||||||||
Sbjct: 177 ttcagataatcaatcttttgggcaaaataaaactcaggggccctaggctcaatattgtgc 118
Query: 2407 ttcttacaaaagggaacccactttctagcaaattctgcggtttctgagagagactcaaaa 2466
||||| || || || |||||||| || ||||| || || ||||| || || | |||||
Sbjct: 117 ttcttgcagaaaggcacccacttccttgcaaactccgcagtttcagaaagggcttcaaac 58
Query: 2467 gtcagcatagctgaaccatcatcagaaacatagcatgacactttgtc 2513
|||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 57 gtcaacatagctgaaccatcatctgaaacatagcatgatactttgtc 11
>gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400040H10F1, mRNA sequence
Length = 612
Score = 355 bits (179), Expect = 8e-096
Identities = 486/587 (82%), Gaps = 1/587 (0%)
Strand = Plus / Minus
Query: 1927 tccatcatgaagcacattgcttctctaagagctttgctgctattgaagtaatggtcgcaa 1986
||||||||||| ||||| |||||| | |||||||| ||| |||||||||| || || |||
Sbjct: 602 tccatcatgaaacacatggcttct-tgagagctttactgttattgaagtagtgatcacaa 544
Query: 1987 tccacattgagaagataggcaccatttgtcagcacagcagatacacgaatcagcgcattc 2046
|| ||||| |||||||| |||||||| ||||| ||||| || || ||||||| |||||||
Sbjct: 543 tcgacattcagaagataagcaccattggtcagtacagctgaaactcgaatcaacgcattc 484
Query: 2047 attgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacatagaca 2106
||||| || || |||||||||||||| || || |||||||||||||| || ||||| |||
Sbjct: 483 attgctccggctttcttgtgatgctggaatccaggtctcttttcacgggaaacatataca 424
Query: 2107 agacgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaagaaaacctga 2166
|| || |||| |||||||||||| ||||| ||||| |||||||| ||||| || |||||
Sbjct: 423 agtcgaggtagctcatttccatccgtgtcaagccccccactgtgacccaaaaacacctgg 364
Query: 2167 atcatgccaggatggtccctaggattattcccaggccatgcagttccatcagccatggtc 2226
||||| || || || ||||| |||||||| |||||||||| ||||||||| ||| |||
Sbjct: 363 atcattcctgggtgatcccttggattatttccaggccatggagttccatcctgcatcgtc 304
Query: 2227 cacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttactttgaat 2286
|| || |||||||||| ||||| |||||||||||||| |||||||||| || ||||||
Sbjct: 303 caaccttcttcaggcatcttctgagctttggcaacaagagcattgattcgcaccttgaat 244
Query: 2287 tcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttgaattttgtcc 2346
|||||||| || ||||||||||| || | || || ||||| ||||| || || ||||||
Sbjct: 243 tcttcatattctctcttcattgctcggcgctctttgacaaaagaaggctgtatcttgtcc 184
Query: 2347 ttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatattgtgc 2406
||||| ||||| || ||||| ||||| ||||| || || || || || |||||| |||||
Sbjct: 183 ttcagataatcaatcttttgggcaaaataaaactcaggggccctaggctcaatactgtgc 124
Query: 2407 ttcttacaaaagggaacccactttctagcaaattctgcggtttctgagagagactcaaaa 2466
||||| || || || |||||||| || ||||| || || ||||| || || | |||||
Sbjct: 123 ttcttgcagaaaggcacccacttccttgcaaactccgcagtttcagaaagggcttcaaat 64
Query: 2467 gtcagcatagctgaaccatcatcagaaacatagcatgacactttgtc 2513
|||| ||| |||||||||||||| || ||||||||||| ||||||||
Sbjct: 63 gtcaacattgctgaaccatcatctgagacatagcatgatactttgtc 17
>gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB51DPD11 5', mRNA sequence
Length = 596
Score = 317 bits (160), Expect = 2e-084
Identities = 492/596 (82%), Gaps = 5/596 (0%)
Strand = Plus / Minus
Query: 1930 atcatgaagcacattgcttctctaagagctttgctgctattgaagtaatggtcgcaatcc 1989
|||||||| ||||| |||||| |||||||||||||| |||||||||| || || |||||
Sbjct: 596 atcatgaaacacatggcttctttaagagctttgctgttattgaagtagtgatcacaatcg 537
Query: 1990 acattgagaagataggcaccatttgtcagcacagca-gatacacgaatcagcgcattcat 2048
|| || ||||||||||||||||| ||||| ||||| || || |||||||| ||||||||
Sbjct: 536 acgttcagaagataggcaccattggtcagtacagcgtgaaactcgaatcagtgcattcat 477
Query: 2049 tgcaccagccttcttgtga-tgctgaaagcctggtctcttttcacgagaga-catagaca 2106
||| || || ||||| ||| ||||| || || || |||||||||||||| | |||| |||
Sbjct: 476 tgctccggctttcttttgaatgctggaatccaggcctcttttcacgagataacatataca 417
Query: 2107 agacgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaagaaaacctga 2166
||||| |||| |||||||||||| || |||||||| || ||||| || ||||| |||||
Sbjct: 416 agacgaggtagctcatttccatccgtatcgagccccccgctgtgacctaagaacacctgg 357
Query: 2167 atcatgccaggatggtccctaggattattcccaggccatgcagttccatcagc-catggt 2225
||||| || || || ||||| |||||||| |||||||||| ||||||||| | ||| ||
Sbjct: 356 atcattcctgggtgatccctgggattatttccaggccatggagttccatccgtgcattgt 297
Query: 2226 ccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttactttgaa 2285
||| || ||||| |||| ||||| |||||||||||||| |||||||| | || |||||
Sbjct: 296 ccaaccttcttctggcatcttctgagctttggcaacaagagcattgatccgcaccttgaa 237
Query: 2286 ttcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttgaattttgtc 2345
||||||||| || ||||||||||| || | || || ||||| ||||| || || |||||
Sbjct: 236 ttcttcatattctctcttcattgctcggcgctctttcacaaaagaaggctgtatcttgtc 177
Query: 2346 cttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatattgtg 2405
|||||| ||||| || ||||| ||||| ||||| || || || || || |||||||||||
Sbjct: 176 cttcagataatcaatcttttgggcaaaataaaactcaggggccctaggctcaatattgtg 117
Query: 2406 cttcttacaaaagggaacccactttctagcaaattctgcggtttctgagagagactcaaa 2465
|||||| || || || |||||||| || ||||| || || ||||| || || | |||||
Sbjct: 116 cttcttgcagaaaggcacccacttccttgcaaactccgcagtttcagaaagggcttcaaa 57
Query: 2466 agtcagcatagctgaaccatcatc-agaaacatagcatgacactttgtcaacaggg 2520
|||| |||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 56 cgtcaacatagctgaaccatcatcttgaaacatagcatgatactttgtcgacaggg 1
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 220 bits (111), Expect = 3e-055
Identities = 531/671 (79%)
Strand = Plus / Minus
Query: 1924 ggatccatcatgaagcacattgcttctctaagagctttgctgctattgaagtaatggtcg 1983
|||||||||||||| |||||||||||||||||||| || ||| |||||| ||| || ||
Sbjct: 1818 ggatccatcatgaaacacattgcttctctaagagccttactgttattgatgtagtgatca 1759
Query: 1984 caatccacattgagaagataggcaccatttgtcagcacagcagatacacgaatcagcgca 2043
||||||| ||| | |||||| | | ||||||| ||||| ||||| || | | || |||
Sbjct: 1758 caatccaaattcaaaagatatggagcatttgttagcacggcagagactctgaccaaagca 1699
Query: 2044 ttcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacatag 2103
||||| || |||||||| ||||| || | ||| || ||||||||||| | || |||||
Sbjct: 1698 ttcatagctccagcctttttgtggtgattaaatccaggtctcttttctctggaaacatat 1639
Query: 2104 acaagacgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaagaaaacc 2163
|| ||||||||||| || |||||||||||||| |||| ||||| || || | |||||||
Sbjct: 1638 accagacgtggtaattcgtttccatcagtgtcatgccctccactttggccaaggaaaacc 1579
Query: 2164 tgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatcagccatg 2223
|||||||| ||||| || || | ||||||||||||||||| ||| ||||| |||
Sbjct: 1578 tgaatcattccagggtgatcacggacattattcccaggccatggagtaccatcctgcatt 1519
Query: 2224 gtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttactttg 2283
||||| || ||||| || || || || || |||||||| | |||||||| | | |||
Sbjct: 1518 gtccatccatcttctgggaccttatgagccttggcaaccaaagcattgatccgaatttta 1459
Query: 2284 aattcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttgaattttg 2343
|| ||||||||||| ||||||||||| | || |||||| |||||||||| || | ||
Sbjct: 1458 aactcttcatactctctcttcattgctcttcgttccttgacaaatgaagcctgcacctta 1399
Query: 2344 tccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatattg 2403
|| ||||| |||||||| ||||||| ||| ||||| || || || | |||||||| |
Sbjct: 1398 tctttcagataatctatcttttgagaaaaataaaactccggtgcccgaggttcaatgcta 1339
Query: 2404 tgcttcttacaaaagggaacccactttctagcaaattctgcggtttctgagagagactca 2463
|||||||| || || ||||| || | |||||||| | |||||||| | | ||||
Sbjct: 1338 aatttcttacagaatgggacccatttctttgcaaattcagatgtttctgacaatgcctca 1279
Query: 2464 aaagtcagcatagctgaaccatcatcagaaacatagcatgacactttgtcaacagggtaa 2523
|| ||||||||||| | |||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 1278 aatgtcagcatagcagcaccatcatcagaaacataacatgaaaccttgtcaacagggtaa 1219
Query: 2524 tccacagaaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaatgga 2583
|| || | ||||||||||| ||| ||||| || || | ||| || || || |||||||||
Sbjct: 1218 tcaactgcaagaatggacagaaccgtgtttgcggtcaccagagggggctctttcaatgga 1159
Query: 2584 tccactgtact 2594
|| || |||||
Sbjct: 1158 tcaacggtact 1148
Score = 73.8 bits (37), Expect = 4e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctct 1371
||||||||||| || |||| |||||||| || || |||||||| ||||| || | ||||
Sbjct: 2448 tgcattttaaagcctgtcaatatatcctctgtaacagaaccataaatccaccctacctct 2389
Query: 1372 tttccccattcagttttgtcctcatatccacaactgatgacatggatagcttc 1424
|| |||||||| ||||| || ||||| ||||| || ||||||||||| |||||
Sbjct: 2388 ttgccccattctgttttatcttcatagccacagctaatgacatggatggcttc 2336
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 1795 tgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatat 1854
||||||||||| | |||| |||| |||||||||||||| || | ||||| || ||||||
Sbjct: 1947 tgaatgccatctaaacctctcatattgatatcaaagaatacagtattccggttggcatat 1888
Query: 1855 cgatcgtgcaagtcaatgccatcaaatctctgtgg 1889
||||| | ||||||||||||||| ||||||||
Sbjct: 1887 cgatcactcctgtcaatgccatcaaacctctgtgg 1853
Score = 48.1 bits (24), Expect = 0.003
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 2695 tttgggaactgatctagaagccaagacaaggcaaaccagacctcgcagataacagatact 2754
|||||||| ||||| |||| ||| || | ||||||||| | ||| ||||| |||||||
Sbjct: 1047 tttgggaattgatcaagaatccatgaaacggcaaaccaaatctcacagatcacagatata 988
Query: 2755 agccataatccataagcatcacgcactggatgactgacacgatactggaagaagaa 2810
|||||||| || | |||||| ||| ||||| |||| ||||| |||||||||||
Sbjct: 987 agccataaagcaaatgcatcattcacaggatgtgtgactcgatagtggaagaagaa 932
>gb|DV466097.1|DV466097 MTUNUL1.P47.C03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 857
Score = 188 bits (95), Expect = 1e-045
Identities = 239/287 (83%)
Strand = Plus / Minus
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
||||| ||||||||||| ||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 342 gtccatttgaacacataaagctctgcaaaatccccatcctcatcagatgcttttgaagtg 283
Query: 808 actgtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaag 867
|| ||||||||||||||||| || || | |||||||| || || ||||| || || |||
Sbjct: 282 acagtgaagttggtatcaatacctgcaagcactttcaaaagcccttggaagacagcaaag 223
Query: 868 agatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatg 927
||||| || || |||||||| || |||||||| || ||||| |||||||| ||||||||
Sbjct: 222 agatgagctgatgtgccaccgatcacccaaaattgttcattcctccaccagtcttcaata 163
Query: 928 ccaacaccgctccatctaagctccaatataccagtggcaaaaatggaggcgaaaagaaga 987
||||| || |||||||||||||| | ||| ||||| ||||| |||||| |||||| |||
Sbjct: 162 ccaactccactccatctaagctcaagtattccagtagcaaagatggagatgaaaaggaga 103
Query: 988 atgaagaacatcccagcataattgctaatctcaggaatgataaattt 1034
||||| |||| ||||| || || || ||||||||||| ||||||||
Sbjct: 102 atgaaccacatgccagcgtagttacttatctcaggaataataaattt 56
Score = 61.9 bits (31), Expect = 2e-007
Identities = 124/155 (80%)
Strand = Plus / Minus
Query: 498 cacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttgg 557
|||||| ||||||||||| || || ||||| || || |||||||| ||||| ||||||||
Sbjct: 594 cacccatagcaaggagaaaatggaagcaaggagtatagaccagacgatgacaattgttgg 535
Query: 558 tgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccca 617
||| || || || | |||| | |||||||||||| || || | |||| || |||||
Sbjct: 534 tgtacgattttgtcgacccaacaaacccttgaggaaaggatacaaatgggcaatgaccca 475
Query: 618 gatcgagaagaacagctttccaaagagcggacccc 652
|| | ||||||||||| ||||||||||||||||
Sbjct: 474 aatagcaaagaacagcttgccaaagagcggacccc 440
>gb|CA925680.1|CA925680 MTU7TL.P4.E11 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 708
Score = 180 bits (91), Expect = 3e-043
Identities = 238/287 (82%)
Strand = Plus / Plus
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
||||| ||||||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||
Sbjct: 84 gtccatttgaacacataaagctctgcaaaatccccatcctcatcggatgcttttgaagtg 143
Query: 808 actgtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaag 867
|| |||||||||||||| || || || | |||||||| || || ||||| || || |||
Sbjct: 144 acagtgaagttggtatcgatacctgcaagcactttcaaaagcccttggaagacagcaaag 203
Query: 868 agatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatg 927
||||| || || |||||||| || ||||| || || ||||| |||||||| ||||||||
Sbjct: 204 agatgagctgacgtgccaccgatcacccagaattgttcattcctccaccagtcttcaata 263
Query: 928 ccaacaccgctccatctaagctccaatataccagtggcaaaaatggaggcgaaaagaaga 987
||||| || |||||||||||||| | ||| ||||||||||| |||||| |||||| |||
Sbjct: 264 ccaactccactccatctaagctcaagtattccagtggcaaagatggagatgaaaaggaga 323
Query: 988 atgaagaacatcccagcataattgctaatctcaggaatgataaattt 1034
||||| |||| ||||| || || |||||||||||||| ||||||||
Sbjct: 324 atgaaccacatgccagcgtagttactaatctcaggaataataaattt 370
Score = 69.9 bits (35), Expect = 7e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 1279 ggcatgcagtagattgattgccagccccttgcatgcattttaaacccagtcagaatatcc 1338
|||||||| ||||||||| |||||| | |||||||| || ||||||||| ||||||
Sbjct: 615 ggcatgcaatagattgatatccagccacgagcatgcatcttngacccagtcaaaatatct 674
Query: 1339 tccgttactgaaccatagatccagccaatctctt 1372
|| || || |||||||||||||| ||||||||||
Sbjct: 675 tcagtaacagaaccatagatccatccaatctctt 708
>gb|CB239511.1|CB239511 RSH12F10 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x Populus
deltoides cDNA 5', mRNA sequence
Length = 606
Score = 149 bits (75), Expect = 9e-034
Identities = 234/287 (81%)
Strand = Plus / Minus
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
||||| ||||||||||| ||||| ||||| || ||||| |||||||| |||||||| ||
Sbjct: 592 gtccatttgaacacataaagctctgcaaaatccccatcttcatcagaagcctttgaagtg 533
Query: 808 actgtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaag 867
|| ||||||||||||||||| || || | ||| |||| || || || || || || |||
Sbjct: 532 acagtgaagttggtatcaatacctgcaagcaccttcaaaagtccttgaaagacggcaaag 473
Query: 868 agatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatg 927
||||| || || || ||||| || ||||| || || ||||| |||||||| ||||||||
Sbjct: 472 agatgagctgatgtaccaccgatgacccagaattgttcattcctccaccagtcttcaata 413
Query: 928 ccaacaccgctccatctaagctccaatataccagtggcaaaaatggaggcgaaaagaaga 987
||||| || |||||||||||||| | ||| ||||| |||||||||||| |||||| |||
Sbjct: 412 ccaactccactccatctaagctcaagtattccagtagcaaaaatggagatgaaaagcaga 353
Query: 988 atgaagaacatcccagcataattgctaatctcaggaatgataaattt 1034
||||| |||| | ||||| || || ||||||||||| ||||||||
Sbjct: 352 atgaaccacatgctggcatagttacttatctcaggaataataaattt 306
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1123 agcctctccaaaagcttcaatcgtccattgtaaccatacca 1163
||||||||||||||||| |||| ||| ||||| ||||||||
Sbjct: 217 agcctctccaaaagctttaatcttccgttgtatccatacca 177
>gb|AJ778476.1|AJ778476 AJ778476 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600001D07F1, mRNA sequence
Length = 677
Score = 149 bits (75), Expect = 9e-034
Identities = 248/303 (81%), Gaps = 2/303 (0%)
Strand = Plus / Minus
Query: 1123 agcctctccaaaagcttcaatcgtccattgtaaccataccagataggacaatgtctacta 1182
||||||||||||||||| |||| ||||||||| |||||||| || || ||||| || ||
Sbjct: 325 agcctctccaaaagctttaatcttccattgtatccataccatatggggcaatgcctgctc 266
Query: 1183 agcagaatttccactga-cccaagagcccaacggagcacctgattaagacgatcggaaag 1241
|| | ||| || | || |||||| ||||| || || ||||| || | |||||| |||||
Sbjct: 265 agtaaaatctcaatagatcccaag-gcccatcgaagaacctggttcaaacgatcagaaag 207
Query: 1242 attgattggtgcagaacccttgaaacaaggtcgtggtggcatgcagtagattgattgcca 1301
|||||| || ||||| ||||| || ||| || || |||||||| ||||||||| |||
Sbjct: 206 attgataggagcagagcccttaaatgcagggcgaggaggcatgcaatagattgatatcca 147
Query: 1302 gccccttgcatgcattttaaacccagtcagaatatcctccgttactgaaccatagatcca 1361
|| | |||||||| || |||||||||| |||||| || || || ||||||||||||||
Sbjct: 146 accacgagcatgcatcttgaacccagtcaaaatatcttctgtaacagaaccatagatcca 87
Query: 1362 gccaatctcttttccccattcagttttgtcctcatatccacaactgatgacatggatagc 1421
||||||||||| ||||||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 86 tccaatctctttgccccattcagtcttgtcttcatatccacagctaataacatggatagc 27
Query: 1422 ttc 1424
|||
Sbjct: 26 ttc 24
Score = 109 bits (55), Expect = 8e-022
Identities = 211/263 (80%)
Strand = Plus / Minus
Query: 772 gcaaagtcgccatcctcatcagatgcctttgaggtaactgtgaagttggtatcaatccca 831
||||| || ||||| ||||||||||||||||| | || ||||||||||||||||| ||
Sbjct: 676 gcaaaatccccatcttcatcagatgcctttgaagggacagtgaagttggtatcaatacct 617
Query: 832 gccaacactttcagcagaccctggaacactgcgaagagatgggcagaggtgccaccaata 891
|| | ||| |||| || || || || || || |||| ||| || || || || || ||
Sbjct: 616 gcaagcaccttcaaaagtccttgaaagacggcaaagaaatgagctgatgtaccgccgatg 557
Query: 892 acccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccatctaagctcc 951
||||| || || ||||| |||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 556 acccagaattgttcattcctccaccagtcttcaataccaactccactccatctaagctca 497
Query: 952 aatataccagtggcaaaaatggaggcgaaaagaagaatgaagaacatcccagcataattg 1011
| ||| ||||| |||||||||||| |||||| |||||||| |||| | ||||| ||
Sbjct: 496 agtattccagtagcaaaaatggagatgaaaagcagaatgaaccacatgctggcatagtta 437
Query: 1012 ctaatctcaggaatgataaattt 1034
|| ||||||||||| ||||||||
Sbjct: 436 cttatctcaggaataataaattt 414
>gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_I21
5', mRNA sequence
Length = 687
Score = 137 bits (69), Expect = 4e-030
Identities = 357/453 (78%)
Strand = Plus / Minus
Query: 498 cacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttgg 557
|||||| ||||||||||| || || ||||| || || |||||||| ||||| ||||||||
Sbjct: 460 cacccatagcaaggagaaaatggaggcaaggagaatagaccagacgatgacaattgttgg 401
Query: 558 tgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccca 617
|| || || |||| |||| | |||||||||||| || || | |||| || |||||
Sbjct: 400 cgtacgattttgccgacccaacaaacccttgaggaaaggatacaaatgggcaatgaccca 341
Query: 618 gatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggc 677
|| | ||||| ||||| |||||||| |||||||| || ||||| |||||||| |||||
Sbjct: 340 aatagcaaagaagagcttgccaaagagaggaccccatgactggtatccactgtttatggc 281
Query: 678 atacgaaattcctgccaccattccgaccaggttaatgacaagaacagtggtcggaggaat 737
||| || | || ||||| || || |||| ||| | | || || ||||| ||||| ||
Sbjct: 280 ataggacacaccagccacaatacccaccatgtttagtaaaatgactgtggttggagggat 221
Query: 738 gagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgc 797
||| | | ||||| ||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 220 gagaagagatgtccatttgaacacataaagctctgcaaaatccccatcttcatcagatgc 161
Query: 798 ctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaa 857
|||||| || || ||||||||||||||||| || || | ||| |||| || || || ||
Sbjct: 160 ctttgaagtgacagtgaagttggtatcaatacctgcaagcaccttcaaaagtccttgaaa 101
Query: 858 cactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcatttctccacca 917
|| || |||||||| || || || ||||| || ||||| || || ||||| ||||||||
Sbjct: 100 gacggcaaagagatgagctgatgtaccaccgatgacccagaattgttcattcctccacca 41
Query: 918 atcttcaatgccaacaccgctccatctaagctc 950
|||||||| ||||| || ||||||||||||||
Sbjct: 40 gtcttcaataccaactccactccatctaagctc 8
>gb|CA931952.1|CA931952 MTU4TA.P25.A10 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 629
Score = 135 bits (68), Expect = 1e-029
Identities = 149/176 (84%)
Strand = Plus / Plus
Query: 2008 ccatttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtga 2067
||||| || |||||||| |||||||||| || |||||||| |||||||| ||||||||
Sbjct: 407 ccattagttagcacagctgatacacgaacaagtgcattcatggcaccagctttcttgtgg 466
Query: 2068 tgctgaaagcctggtctcttttcacgagagacatagacaagacgtggtaactcatttcca 2127
||||| |||||||| | |||||||||||| ||||| || | ||||| | |||||| |||
Sbjct: 467 tgctggaagcctggacgcttttcacgagaaacataaactaaccgtggcagctcattacca 526
Query: 2128 tcagtgtcgagcccaccactgtgccccaagaaaacctgaatcatgccaggatggtc 2183
||||| || ||||| ||||| ||||| ||||||||||||||||| || ||||||||
Sbjct: 527 tcagtatcaagccctccactttgccctaagaaaacctgaatcattcctggatggtc 582
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 1822 atatcaaagaaaactatgttccgattagcatatcgatcgtgcaagtcaatgccatcaaat 1881
||||||||||| || | || ||||| ||||||||||| | | ||||||||||||||||
Sbjct: 221 atatcaaagaacacagtattgcgattggcatatcgatcattcttgtcaatgccatcaaat 280
Query: 1882 ctctgtggaaattgtacata 1901
|| ||||||||||| |||||
Sbjct: 281 ctttgtggaaattgaacata 300
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1924 ggatccatcatgaagcacattgcttctct 1952
|||||||||||||| ||||| ||||||||
Sbjct: 323 ggatccatcatgaaacacatagcttctct 351
>gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 882
Score = 131 bits (66), Expect = 2e-028
Identities = 261/326 (80%)
Strand = Plus / Minus
Query: 1279 ggcatgcagtagattgattgccagccccttgcatgcattttaaacccagtcagaatatcc 1338
|||||||| ||||||||| ||| || | |||||||| || ||||| |||| ||||||
Sbjct: 399 ggcatgcaatagattgatatccaaccacgagcatgcatcttgaacccggtcaaaatatct 340
Query: 1339 tccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcctcatat 1398
|| || || |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct: 339 tctgtaacggaaccatagatccatccaatctctttgccccattcagtcttgtcttcatat 280
Query: 1399 ccacaactgatgacatggatagcttcctttagtagagaagctgggtttgttgaaggtggt 1458
||||| || || |||||||||||||| || | |||| || || || |||| |||||
Sbjct: 279 ccacagctaataacatggatagcttctttcaaaagagttgcaggattggttgtcggtgga 220
Query: 1459 atgccaccttgtgtcataaaggtggatgcaatgaaaataggagactgaccaaagcgtttc 1518
||||| || ||| | ||||| | |||||| |||| || ||||||||||| || ||
Sbjct: 219 atgcctccctgttcctggaaggtagctgcaataaaaactggtgactgaccaaaacgcttt 160
Query: 1519 tccaatttcctctgggacataagcactgacctttcatcctcgtaaccttcaataccctct 1578
|| || || |||| |||||||||| |||||| ||||| || || ||||||| ||||||
Sbjct: 159 tctaaactcttctgtgacataagcagtgacctctcatcatcatatccttcaacaccctcc 100
Query: 1579 tcgatgtcttccatattgaagatggg 1604
|| ||||| ||||||||||| |||||
Sbjct: 99 tcaatgtcctccatattgaaaatggg 74
>gb|AY055724.2| Populus tremuloides cellulose synthase (CesA5) mRNA, complete cds
Length = 3532
Score = 127 bits (64), Expect = 3e-027
Identities = 397/508 (78%)
Strand = Plus / Minus
Query: 2008 ccatttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtga 2067
||||| || ||||| || |||||||||| || | |||||| |||||||| ||||||||
Sbjct: 1884 ccattagttagcacggctgatacacgaacaagtgaattcatggcaccagctttcttgtgg 1825
Query: 2068 tgctgaaagcctggtctcttttcacgagagacatagacaagacgtggtaactcatttcca 2127
||||| ||||| || | |||||||||||| ||||| || | || || | |||||| |||
Sbjct: 1824 tgctggaagccaggacgcttttcacgagaaacataaactaaccgcggaagctcattacca 1765
Query: 2128 tcagtgtcgagcccaccactgtgccccaagaaaacctgaatcatgccaggatggtcccta 2187
|||| || ||||| ||||| || |||||||||||||||||||| || |||||||| ||
Sbjct: 1764 tcagaatcaagccctccactttggcccaagaaaacctgaatcattcctggatggtctctg 1705
Query: 2188 ggattattcccaggccatgcagttccatcagccatggtccacccctcttcaggcactttc 2247
| ||||| |||||||||| || ||||| ||| |||| || ||||||||||| ||
Sbjct: 1704 gtgttatttccaggccatggggtcccatcttgcataatccatccttcttcaggcaccttt 1645
Query: 2248 tgtgctttggcaacaagggcattgattcttactttgaattcttcatactccctcttcatt 2307
|| || ||||||||||| ||||||| | | ||| ||||||||||| || ||||||||
Sbjct: 1644 tgcgccttggcaacaagcccattgatacgaattttaaattcttcatattctctcttcata 1585
Query: 2308 gcgcgtctttccttaacaaatgaaggttgaattttgtccttcaggtaatctattttttga 2367
|| | | || || ||||| || || || | ||| ||||||| ||| || || |||||
Sbjct: 1584 gctctacggtctttgacaaaagatggctgcactttatccttcaagtagtcaatcttttgt 1525
Query: 2368 gcaaagtaaaattctggagctcttggttcaatattgtgcttcttacaaaagggaacccac 2427
|||||||| |||||||||| | || ||||| ||| |||||| || ||||| |||||
Sbjct: 1524 gcaaagtaccattctggagcccgaggctcaatgctgtacttcttgcagaagggcacccat 1465
Query: 2428 tttctagcaaattctgcggtttctgagagagactcaaaagtcagcatagctgaaccatca 2487
|| || | ||| |||| || || || | || ||||| |||| ||| || | |||||||
Sbjct: 1464 ttcctggaaaactctgaagtctcagacaaagcttcaaatgtcaacattgcagcaccatca 1405
Query: 2488 tcagaaacatagcatgacactttgtcaa 2515
||||| ||||||||||| ||||||||||
Sbjct: 1404 tcagagacatagcatgagactttgtcaa 1377
Score = 111 bits (56), Expect = 2e-022
Identities = 101/116 (87%)
Strand = Plus / Minus
Query: 1309 gcatgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatc 1368
|||||||| ||||||||||| |||||||| || || || |||||||||||||| ||||||
Sbjct: 2595 gcatgcatcttaaacccagtaagaatatcttctgtaacagaaccatagatccatccaatc 2536
Query: 1369 tcttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttc 1424
|| |||||| || |||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 2535 tcagatccccaatctgttttgtcctcatacccacaactaatgacatgaatagcttc 2480
Score = 85.7 bits (43), Expect = 1e-014
Identities = 181/227 (79%)
Strand = Plus / Minus
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
||||| ||||||| ||||| |||||| | || || ||||| || |||||||| || |||
Sbjct: 3156 gtccatttgaacaagtatagttcagcagaatcaccgtcctcgtctgatgccttggacgta 3097
Query: 808 actgtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaag 867
|| ||||||||||| ||||| ||||| | ||||| |||| || ||||| || || ||
Sbjct: 3096 acagtgaagttggtgtcaatgccagcaagtactttgagcaagccttggaaaacagcaaaa 3037
Query: 868 agatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatg 927
|||||||| || ||||| || ||||||||||| ||||| |||||||| || |||||
Sbjct: 3036 agatgggctgaaacaccaccgatgacccaaaactgttcattcctccaccactcatcaatc 2977
Query: 928 ccaacaccgctccatctaagctccaatataccagtggcaaaaatgga 974
|||||||| ||||| || | |||||| ||||| || ||||| |||||
Sbjct: 2976 ccaacaccactccacctcatctccaagataccggttgcaaagatgga 2930
Score = 69.9 bits (35), Expect = 7e-010
Identities = 140/175 (80%)
Strand = Plus / Minus
Query: 497 tcacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttg 556
||||||||| |||||| ||||| || ||||| || || ||||| || | || || || |
Sbjct: 3407 tcacccacaacaaggaaaagattgaagcaaggagaatagaccacacgacaacaatggtgg 3348
Query: 557 gtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccc 616
|||| |||||||| | ||||| | ||| || ||||| || |||||||||| ||||||||
Sbjct: 3347 gtgtccggttctggcgacccatcaaaccttttaggaaaggatagagatggacgatcaccc 3288
Query: 617 agatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgtt 671
||| | |||||| ||||| |||||||| |||||||| || || || ||||||||
Sbjct: 3287 agaaagcgaagaaaagcttgccaaagagtggaccccatgactgataaccactgtt 3233
Score = 69.9 bits (35), Expect = 7e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 1795 tgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatat 1854
||||| ||||||||||| ||| ||| ||||||||||| || | || ||||| ||||||
Sbjct: 2097 tgaataccatccagacccctcaagtttatatcaaagaatacagtattgcgattggcatat 2038
Query: 1855 cgatcgtgcaagtcaatgccatcaaatctctgtggaaattgtacata 1901
||||| | | |||||||||||||||||| |||||||| || |||||
Sbjct: 2037 cgatcattcctgtcaatgccatcaaatctttgtggaaactgaacata 1991
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 2641 tcatacctcaatgcaagcctgtcaagatatgt 2672
||||| ||||| ||||||||||||||||||||
Sbjct: 1251 tcatatctcaaagcaagcctgtcaagatatgt 1220
Score = 42.1 bits (21), Expect = 0.16
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 3366 agggctacctttctgtctcttgtatctagtcttgcactgggggcagcattggttcccctc 3425
|||||||||||| | ||||||||||| || |||||||| ||||| | || || || ||
Sbjct: 463 agggctacctttgagcctcttgtatctggttttgcactgagggcaagactgattgccatc 404
Query: 3426 cttgcgctcatactcatagca 3446
||| | ||| |||||||||||
Sbjct: 403 cttcctctcgtactcatagca 383
>gb|AJ771596.1|AJ771596 AJ771596 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600003B06F1, mRNA sequence
Length = 575
Score = 125 bits (63), Expect = 1e-026
Identities = 153/183 (83%)
Strand = Plus / Minus
Query: 1698 aatgtttggctccagatcagcttcagtcaaaacaggatcgtatccatacaaagcctgtct 1757
||||||||| |||| ||| | || |||||||| ||||| || ||||||| || || |
Sbjct: 209 aatgtttggttccaaatcttcctctgtcaaaactggatcataaccatacagggcttgccg 150
Query: 1758 attgaaacagcatcctgttcccacgtaaactggaccctgaatgccatccagacctttcat 1817
||||||||||| || ||||| || || || || ||||| ||||| |||||||| ||||
Sbjct: 149 gttgaaacagcaaccagttccaacatacacaggcccctggatgccgtccagacccttcaa 90
Query: 1818 gttgatatcaaagaaaactatgttccgattagcatatcgatcgtgcaagtcaatgccatc 1877
|||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||
Sbjct: 89 gttgatatcaaagaaaacaatattgcgattggcatatcgatcgtgcaagtcaatgccatc 30
Query: 1878 aaa 1880
|||
Sbjct: 29 aaa 27
Score = 99.6 bits (50), Expect = 8e-019
Identities = 207/258 (80%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 1348 gaaccatagatccagccaatctcttttccccattcagttttgtcctcatatccacaactg 1407
|||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct: 566 gaaccatagatccatccaatctctttgccccattcagtcttgtcttcatatccacagcta 507
Query: 1408 atgacatggatagcttcctttagtagagaagctgggtttgttgaaggtggtatgccacct 1467
|| |||||||||||||| || | |||| || || || |||| ||||| ||||| ||
Sbjct: 506 ataacatggatagcttctttcaaaagagttgcaggattggttgttggtggaatgcctccc 447
Query: 1468 tgtgtcataaaggtggatgcaatgaaaataggagactgaccaaagcgtttctccaatttc 1527
||| | ||||| | |||||| |||| || ||||||||||| || || || || ||
Sbjct: 446 tgttcctggaaggtagctgcaataaaaactggtgactgaccaaaacgcttttctaaactc 387
Query: 1528 ctctgggacataagcactgacctttcatcctcgtaaccttcaataccctcttcgatgt-c 1586
|||| |||||||||| |||||| ||||| || || ||||||| |||||| || |||| |
Sbjct: 386 ttctgcgacataagcagtgacctctcatcatcatatccttcaacaccctcctcaatgtnc 327
Query: 1587 ttccatattgaagatggg 1604
||||||||||| |||||
Sbjct: 326 ctccatattgaaaatggg 309
>gb|CA932078.1|CA932078 MTU4TA.P26.F03 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 596
Score = 119 bits (60), Expect = 8e-025
Identities = 148/176 (84%), Gaps = 1/176 (0%)
Strand = Plus / Plus
Query: 2008 ccatttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtga 2067
||||| || |||||||| |||||||||| || |||||||| |||||||| ||||||||
Sbjct: 404 ccattagttagcacagctgatacacgaacaagtgcattcatggcaccagctttcttgtgg 463
Query: 2068 tgctgaaagcctggtctcttttcacgagagacatagacaagacgtggtaactcatttcca 2127
||||| |||||||| | |||||||||||| ||||| || | ||||| | |||||| |||
Sbjct: 464 tgctggaagcctggacgcttttcacgagaaacataaactaaccgtggcagctcattacca 523
Query: 2128 tcagtgtcgagcccaccactgtgccccaagaaaacctgaatcatgccaggatggtc 2183
||||| || ||||| ||||| ||||| ||| ||||||||||||| || ||||||||
Sbjct: 524 tcagtatcaagccctccactttgccctaag-aaacctgaatcattcctggatggtc 578
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 1822 atatcaaagaaaactatgttccgattagcatatcgatcgtgcaagtcaatgccatcaaat 1881
||||||||||| || | || ||||| ||||||||||| | | ||||||||||||||||
Sbjct: 218 atatcaaagaacacagtattgcgattggcatatcgatcattcttgtcaatgccatcaaat 277
Query: 1882 ctctgtggaaattgtacata 1901
|| ||||||||||| |||||
Sbjct: 278 ctttgtggaaattgaacata 297
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1924 ggatccatcatgaagcacattgcttctct 1952
|||||||||||||| ||||| ||||||||
Sbjct: 320 ggatccatcatgaaacacatagcttctct 348
>gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 5', mRNA sequence
Length = 912
Score = 119 bits (60), Expect = 8e-025
Identities = 333/424 (78%)
Strand = Plus / Minus
Query: 2362 ttttgagcaaagtaaaattctggagctcttggttcaatattgtgcttcttacaaaaggga 2421
|||||||| ||||| |||||||||||| || ||||||| | ||||| || || |||
Sbjct: 876 ttttgagcgaagtaccattctggagctcgcggctcaatatcatatttcttgcagaaagga 817
Query: 2422 acccactttctagcaaattctgcggtttctgagagagactcaaaagtcagcatagctgaa 2481
||||| |||||||||||||| | ||||| || | | ||||| |||| |||||| |
Sbjct: 816 acccattttctagcaaattcagacgtttcagatatggcttcaaatgtcaacatagcagct 757
Query: 2482 ccatcatcagaaacatagcatgacactttgtcaacagggtaatccacagaaagaatggac 2541
|||||||| ||||||||||| || |||||||| || |||||||| || | |||||| ||
Sbjct: 756 ccatcatctgaaacatagcaagagactttgtcgactgggtaatctactgcaagaatagat 697
Query: 2542 aaaacagtgttggctgtgatcagtggaggttccttcaatggatccactgtactgacgaag 2601
| ||||| |||||||||| ||||||||||||||| || || || ||||||||||| ||
Sbjct: 696 agcacagtattggctgtgaccagtggaggttcctttaaagggtcgactgtactgacaaaa 637
Query: 2602 acatcaatgggagccagctgtgatggctctccctctctatcatacctcaatgcaagcctg 2661
| |||| | ||||| || || |||||||| ||| | ||||| || | | ||||||
Sbjct: 636 atgtcaacagcagccaattgagacggctctccttctttctcatatctgagagatagcctg 577
Query: 2662 tcaagatatgtctcacggttgattggataccattttgggaactgatctagaagccaagac 2721
||||||||||||||||| || | |||| |||||| ||||| ||||| | | ||| ||
Sbjct: 576 tcaagatatgtctcacgattcactggaagccatttagggaattgatccaatatccatgat 517
Query: 2722 aaggcaaaccagacctcgcagataacagatactagccataatccataagcatcacgcact 2781
| |||||||| | ||| ||||||||||||| || ||| || |||||||||| | ||||
Sbjct: 516 attgcaaaccatatctcacagataacagatattaaccacaaagcataagcatccctcact 457
Query: 2782 ggat 2785
||||
Sbjct: 456 ggat 453
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 113 bits (57), Expect = 5e-023
Identities = 108/125 (86%)
Strand = Plus / Minus
Query: 1311 atgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctc 1370
|||||| ||||| || ||||||||||||||||| | ||||| || |||||||| | |||
Sbjct: 2240 atgcatcttaaaacctgtcagaatatcctccgtgatcgaaccgtaaatccagcccagctc 2181
Query: 1371 ttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttag 1430
|||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 2180 gagtccccattcagttttgtcttcatatccacaactgatcacatggatggcttcctttag 2121
Query: 1431 tagag 1435
||||
Sbjct: 2120 cagag 2116
Score = 93.7 bits (47), Expect = 5e-017
Identities = 128/155 (82%)
Strand = Plus / Minus
Query: 1741 ccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaactggaccctgaatg 1800
||||||||||| || || |||||| ||||||||| ||||| || ||||||||||||||
Sbjct: 1873 ccatacaaagcttgccttttgaaaacgcatcctgtgcccacatacactggaccctgaatt 1814
Query: 1801 ccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatatcgatcg 1860
||||| ||||| |||||||| ||||| |||||||| |||| | || || ||||||||
Sbjct: 1813 ccatctagacccttcatgttaatatcgaagaaaacagtgtttctgttggcgtatcgatca 1754
Query: 1861 tgcaagtcaatgccatcaaatctctgtggaaattg 1895
|| ||||||||||||||||| || ||||||||
Sbjct: 1753 tgtgtatcaatgccatcaaatctttgaggaaattg 1719
Score = 75.8 bits (38), Expect = 1e-011
Identities = 155/194 (79%)
Strand = Plus / Minus
Query: 2164 tgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatcagccatg 2223
|||||||| ||||| || ||||| | ||| || |||||||||| |||||||| |||
Sbjct: 1450 tgaatcataccagggtgatccctcgtattgtttccaggccatggtgttccatcttgcata 1391
Query: 2224 gtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttactttg 2283
||||||||||| ||| || ||||||||||| || |||| ||||| || | || |||
Sbjct: 1390 atccacccctctgtaggaaccttctgtgcttttgctacaatcgcatttatccgaaccttg 1331
Query: 2284 aattcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttgaattttg 2343
||||||||||| || |||||||| || || | |||||||||||| | || |||| ||||
Sbjct: 1330 aattcttcatattctctcttcatagctcgacgttccttaacaaaggttggctgaactttg 1271
Query: 2344 tccttcaggtaatc 2357
||||| ||||||||
Sbjct: 1270 tccttgaggtaatc 1257
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 568 tgccttcccatgagacccttgaggaaggggtagagatggaggatcacccaga 619
||||| ||||| ||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 2983 tgcctccccattagacctttgaggaatgggtagagatggacaatcacccaga 2932
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 883 ccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccat 942
||||| |||||||| || ||||| ||||||||||| || ||||||| || |||||||||
Sbjct: 2671 ccacctataacccagaattgctcgtttctccaccattcctcaatgcttactccgctccat 2612
Query: 943 ctaagctc 950
|| |||||
Sbjct: 2611 ctgagctc 2604
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3384 cttgtatctagtcttgcactgggg 3407
||||||||||||||||||||||||
Sbjct: 281 cttgtatctagtcttgcactgggg 258
Score = 46.1 bits (23), Expect = 0.010
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 1188 aatttccactgacccaagagcccaacggagcacctgattaagacgatcggaaagattgat 1247
|||||| || || ||||||||||| |||||||| || || || ||||| || ||||||||
Sbjct: 2363 aatttcaacagatccaagagcccagcggagcacttggtttagccgatctgatagattgat 2304
Query: 1248 tggtgcagaaccctt 1262
|| || ||||||||
Sbjct: 2303 gggagctgaaccctt 2289
>gb|CK320732.1|CK320732 X9SP01b11 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 769
Score = 109 bits (55), Expect = 8e-022
Identities = 368/471 (78%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||| |||||||||||||| ||||| || | ||||| || | || || || |||
Sbjct: 697 acccacagtaaggagaagatagaagcaaggagaactgaccacaccacaacaatcgtaggt 638
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|| ||||| || | |||||| |||||||||||||| || || ||||| | |||||||||
Sbjct: 637 gttcggttttggcgtcccatcagacccttgaggaaaggataaagatgaataatcacccag 578
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggca 678
| | ||||| ||||| |||||||| |||||||| ||||| || |||||||| |||||
Sbjct: 577 aaagcaaagaaaagcttgccaaagagaggaccccaagattgataaccactgtttatggcg 518
Query: 679 tacgaaattcctgccaccattccgaccaggttaatgacaagaacagtggtcggaggaatg 738
|| || | |||||| |||| ||| ||||| || || | || | ||| || || || ||
Sbjct: 517 taagagactcctgcaaccactccaaccagattgattatgaggagagtagttggtgggata 458
Query: 739 agcaaactggtccacttgaacacatatagctcagcaaagtcgccat-cctcatcagatgc 797
|| ||| ||||||| ||||||| ||||||||| | ||| || |||| | |||||||||||
Sbjct: 457 agtaaagtggtccatttgaacatatatagctcggtaaaatcaccatacttcatcagatgc 398
Query: 798 ctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaa 857
||||| || ||||| || || || || ||||| | ||||||||||| || |||||
Sbjct: 397 ttttgaagtgactgtaaaatttaaatatattccagcaaggactttcagcaggccttggaa 338
Query: 858 cactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcatttctccacca 917
|| || |||||||| || || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 337 gacagcaaagagatgagctgacacacctccaataacccagaactgttcattcctccacca 278
Query: 918 atcttcaatgccaacaccgctccatctaagctccaatataccagtggcaaa 968
|| || || |||||||| |||||||| | ||||| |||||||| |||||
Sbjct: 277 ttcatcgatcccaacaccactccatctcatttccaaaataccagttgcaaa 227
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1065 acaataggcaataagcggaatggatgtgattggata 1100
||||||||||| ||| ||||||||||||||||||||
Sbjct: 130 acaataggcaagaagaggaatggatgtgattggata 95
>gb|DT476519.1|DT476519 WS01229.B21_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 3', mRNA sequence
Length = 853
Score = 107 bits (54), Expect = 3e-021
Identities = 174/214 (81%)
Strand = Plus / Plus
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
||||||||||||| ||||||||| | ||| || ||||| ||||| ||||| ||||| ||
Sbjct: 640 gtccacttgaacatatatagctcggtaaaatcaccatcttcatcggatgcttttgaagtg 699
Query: 808 actgtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaag 867
|| || || |||||||| || ||||| | ||||||||||| || ||||| || || ||
Sbjct: 700 acagtaaaattggtatctattccagcaaggactttcagcaggccttggaagacagcaaat 759
Query: 868 agatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatg 927
||||| || || || ||||||||||| |||||||||||||||||||| || |||||
Sbjct: 760 agatgagctgacacacctccaataacccagaactgctcatttctccaccattcgtcaatc 819
Query: 928 ccaacaccgctccatctaagctccaatataccag 961
|||||||| |||||||| | ||||| |||||||
Sbjct: 820 ccaacaccactccatctcatttccaaaataccag 853
Score = 93.7 bits (47), Expect = 5e-017
Identities = 146/179 (81%)
Strand = Plus / Plus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
||||| ||||||||||| ||||| ||||| || | ||||| |||| | ||| || |||
Sbjct: 390 acccagagcaaggagaaaatagaggcaaggagaaccgaccatacaacaatgatagtaggt 449
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|| |||||||| | |||||| |||||||||||||| ||||| ||||| | |||||||||
Sbjct: 450 gttcggttctggcgtcccatcagacccttgaggaaagggtaaagatgaataatcacccag 509
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggc 677
| | ||||| ||||| |||||||| |||||||| ||||| || |||||||| |||||
Sbjct: 510 aaagcaaagaaaagcttgccaaagaggggaccccaagattgataaccactgtttatggc 568
>gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_E11 3', mRNA sequence
Length = 774
Score = 107 bits (54), Expect = 3e-021
Identities = 261/330 (79%)
Strand = Plus / Plus
Query: 498 cacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttgg 557
|||||| ||||||||||| || || ||||| || || |||||||| ||||| ||||||||
Sbjct: 336 cacccatagcaaggagaaaatggaggcaaggagaatagaccagacgatgacaattgttgg 395
Query: 558 tgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccca 617
|| || || |||| |||| | |||||||||||| || || | |||| || |||||
Sbjct: 396 cgtacgattttgccgacccaacaaacccttgaggaaaggatacaaatgggcaatgaccca 455
Query: 618 gatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggc 677
|| | ||||| ||||| |||||||| |||||||| || ||||| |||||||| |||||
Sbjct: 456 aatagcaaagaagagcttgccaaagagaggaccccatgactggtatccactgtttatggc 515
Query: 678 atacgaaattcctgccaccattccgaccaggttaatgacaagaacagtggtcggaggaat 737
||| || | || ||||| || || |||| ||| | | || || ||||| ||||| ||
Sbjct: 516 ataggacacaccagccacaatacccaccatgtttagtaaaatgactgtggttggagggat 575
Query: 738 gagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgc 797
||| | | ||||| ||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 576 gagaagagatgtccatttgaacacataaagctctgcaaaatccccatcttcatcagatgc 635
Query: 798 ctttgaggtaactgtgaagttggtatcaat 827
|||||| || || |||||||||||||||||
Sbjct: 636 ctttgaagtgacagtgaagttggtatcaat 665
>gb|CN549808.1|CN549808 GQ0241.B3_H11 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_H11 5', mRNA sequence
Length = 840
Score = 103 bits (52), Expect = 5e-020
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 1309 gcatgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatc 1368
|||||||| ||||| ||||| |||||||| || || || |||||||||||||| ||||||
Sbjct: 554 gcatgcatcttaaaaccagtaagaatatcttctgtaacagaaccatagatccatccaatc 495
Query: 1369 tcttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttc 1424
|| |||||| || |||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 494 tcagatccccaatctgttttgtcctcatacccacaactaatgacatgaatagcttc 439
>gb|CV244615.1|CV244615 WS0255.B21_C09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_C09
3', mRNA sequence
Length = 402
Score = 103 bits (52), Expect = 5e-020
Identities = 160/196 (81%)
Strand = Plus / Minus
Query: 1795 tgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatat 1854
||||||||||||| |||| |||| |||||||||||||| || ||||||| || ||||||
Sbjct: 202 tgaatgccatccaaacctctcatattgatatcaaagaatacagtgttccggttggcatat 143
Query: 1855 cgatcgtgcaagtcaatgccatcaaatctctgtggaaattgtacataacaagttttcctt 1914
||||| | ||||||||||||||| |||||||| || || ||||| || | || ||
Sbjct: 142 cgatcactcctgtcaatgccatcaaacctctgtgggaactggacatagcacactctcttt 83
Query: 1915 cctagagccggatccatcatgaagcacattgcttctctaagagctttgctgctattgaag 1974
|| || |||||||||||||| |||||||||||||||||||| || ||| |||||| |
Sbjct: 82 ccaagtaatggatccatcatgaaacacattgcttctctaagagccttactgttattgatg 23
Query: 1975 taatggtcgcaatcca 1990
|| || || |||||||
Sbjct: 22 tagtgatcacaatcca 7
>gb|DT489371.1|DT489371 WS02542.B21_A18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_A18 3', mRNA sequence
Length = 402
Score = 103 bits (52), Expect = 5e-020
Identities = 160/196 (81%)
Strand = Plus / Minus
Query: 1795 tgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatat 1854
||||||||||||| |||| |||| |||||||||||||| || ||||||| || ||||||
Sbjct: 202 tgaatgccatccaaacctctcatattgatatcaaagaatacagtgttccggttggcatat 143
Query: 1855 cgatcgtgcaagtcaatgccatcaaatctctgtggaaattgtacataacaagttttcctt 1914
||||| | ||||||||||||||| |||||||| || || ||||| || | || ||
Sbjct: 142 cgatcactcctgtcaatgccatcaaacctctgtgggaactggacatagcacactctcttt 83
Query: 1915 cctagagccggatccatcatgaagcacattgcttctctaagagctttgctgctattgaag 1974
|| || |||||||||||||| |||||||||||||||||||| || ||| |||||| |
Sbjct: 82 ccaagtaatggatccatcatgaaacacattgcttctctaagagccttactgttattgatg 23
Query: 1975 taatggtcgcaatcca 1990
|| || || |||||||
Sbjct: 22 tagtgatcacaatcca 7
>gb|CF235713.1|CF235713 PtaJXT0026B7B0703 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 639
Score = 101 bits (51), Expect = 2e-019
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1741 ccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaactggaccctgaatg 1800
||||||||||| || || |||||| ||||||||| ||||| || ||||||||||||||
Sbjct: 582 ccatacaaagcttgccttttgaaaacgcatcctgtgcccacatacactggaccctgaatt 523
Query: 1801 ccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatatcgatcg 1860
||||| ||||| |||||||| |||||||||||||| |||| | || || ||||||||
Sbjct: 522 ccatctagacccttcatgttaatatcaaagaaaacagtgtttctgttggcgtatcgatca 463
Query: 1861 tgcaagtcaatgccatcaaatctctgtggaaattg 1895
|| ||||||||||||||||| || ||||||||
Sbjct: 462 tgtgtatcaatgccatcaaatctttgaggaaattg 428
Score = 46.1 bits (23), Expect = 0.010
Identities = 113/143 (79%)
Strand = Plus / Minus
Query: 2164 tgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatcagccatg 2223
|||||||| ||||| || ||||| | ||| || |||||||||| |||||||| |||
Sbjct: 159 tgaatcataccagggtgatccctcgtattgtttccaggccatggtgttccatcttgcata 100
Query: 2224 gtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttactttg 2283
||||||||||| ||| || ||||||||||| || |||| ||||| || | || |||
Sbjct: 99 atccacccctctgtaggaaccttctgtgcttttgctacaatcgcatttatccgaaccttg 40
Query: 2284 aattcttcatactccctcttcat 2306
|||||||| || || ||||||||
Sbjct: 39 aattcttcgtattctctcttcat 17
>gb|DT500162.1|DT500162 PX0011.BR_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0011_G15
5', mRNA sequence
Length = 701
Score = 101 bits (51), Expect = 2e-019
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1741 ccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaactggaccctgaatg 1800
||||||||||| || || |||||| ||||||||| ||||| || ||||||||||||||
Sbjct: 349 ccatacaaagcttgccttttgaaaacgcatcctgtgcccacatacactggaccctgaatt 290
Query: 1801 ccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatatcgatcg 1860
||||| ||||| |||||||| |||||||||||||| |||| | || || ||||||||
Sbjct: 289 ccatctagacccttcatgttaatatcaaagaaaacagtgtttctgttggcgtatcgatca 230
Query: 1861 tgcaagtcaatgccatcaaatctctgtggaaattg 1895
|| ||||||||||||||||| || ||||||||
Sbjct: 229 tgtgtatcaatgccatcaaatctttgaggaaattg 195
Score = 89.7 bits (45), Expect = 7e-016
Identities = 93/109 (85%)
Strand = Plus / Minus
Query: 1327 gtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattcagtt 1386
|||||||||||||| || | ||||| || |||||||| | ||| |||||||||||||
Sbjct: 700 gtcagaatatcctctgtgatcgaaccgtaaatccagcccagctcgagtccccattcagtt 641
Query: 1387 ttgtcctcatatccacaactgatgacatggatagcttcctttagtagag 1435
||||| ||||||||||||||||| |||||||| ||||| ||||| ||||
Sbjct: 640 ttgtcttcatatccacaactgatcacatggatggcttcttttagcagag 592
>gb|DT509821.1|DT509821 WS02424.BR_N10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_N10 5', mRNA sequence
Length = 723
Score = 101 bits (51), Expect = 2e-019
Identities = 180/223 (80%)
Strand = Plus / Minus
Query: 746 tggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgagg 805
||||||| ||||||| ||||||||| | ||| || ||||| ||||||||||| ||||| |
Sbjct: 616 tggtccatttgaacatatatagctcggtaaaatcaccatcttcatcagatgcttttgaag 557
Query: 806 taactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcga 865
| ||||| || || ||||| || ||||| | ||||||||||| || ||||| || || |
Sbjct: 556 tgactgtaaaatttgtatctattccagcaaggactttcagcaggccttggaagacagcaa 497
Query: 866 agagatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaa 925
||||||| || || || ||||||||||| ||||| ||||| |||||||| || || |
Sbjct: 496 agagatgagctgacacacctccaataacccagaactgttcattcctccaccattcatcga 437
Query: 926 tgccaacaccgctccatctaagctccaatataccagtggcaaa 968
| |||||||| |||||||| | ||||| |||||||| |||||
Sbjct: 436 tcccaacaccactccatctcatttccaaaataccagttgcaaa 394
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1065 acaataggcaataagcggaatggatgtgattggata 1100
||||||||||| ||| ||||||||||||||||||||
Sbjct: 297 acaataggcaagaagaggaatggatgtgattggata 262
>gb|CF233490.1|CF233490 PtaJXO0024C12C1206 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 584
Score = 99.6 bits (50), Expect = 8e-019
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 1311 atgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctc 1370
|||||| ||||| || ||||||||||||||||| | ||||| || |||||||| | |||
Sbjct: 446 atgcatcttaaaacctgtcagaatatcctccgtgatcgaaccgtaaatccagcccagctc 387
Query: 1371 ttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttag 1430
|||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 386 gagtccccattcagtttngtcttcatatccacaactgatcacatggatggcttcttttag 327
Query: 1431 tagag 1435
||||
Sbjct: 326 cagag 322
Score = 65.9 bits (33), Expect = 1e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 1741 ccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaactggaccctgaatg 1800
||||||||||| || || |||||| ||||||||| ||||| || ||||||||||||||
Sbjct: 79 ccatacaaagcttgccttttgaaaacgcatcctgtgcccacatacactggaccctgaatt 20
Query: 1801 ccatccagacctttcat 1817
||||| ||||| |||||
Sbjct: 19 ccatctagacccttcat 3
>gb|DT493580.1|DT493580 WS0111.BR_M17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_M17
5', mRNA sequence
Length = 514
Score = 99.6 bits (50), Expect = 8e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 497 tcacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttg 556
||||||||| ||| || ||||| ||||||||||| || ||||| || | || || || |
Sbjct: 182 tcacccacaacaacgaaaagatggatgcaagaagaatagaccacacgacaacaatggtgg 123
Query: 557 gtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccc 616
|||| |||||||| | ||||| | ||| |||||||| ||||||||||||| ||||||||
Sbjct: 122 gtgtccggttctggcgacccatcaaacctttgaggaaagggtagagatggacgatcaccc 63
Query: 617 agatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatgg 676
||| | ||||| ||||| |||||||| |||||||| || ||||| |||||||| ||||
Sbjct: 62 agaaggcaaagaaaagcttgccaaagagtggaccccacgactggtaaccactgttgatgg 3
Query: 677 ca 678
||
Sbjct: 2 ca 1
>gb|DN495393.1|DN495393 N041C05.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N041C05 5', mRNA sequence
Length = 544
Score = 97.6 bits (49), Expect = 3e-018
Identities = 241/305 (79%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||| |||||||||||||| ||||| || | ||||| || | || || || |||
Sbjct: 307 acccacagtaaggagaagatagaagcaaggagaactgaccacaccacaacaatcgtaggt 248
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|| ||||| || | |||||| |||||||||||||| || || ||||| | |||||||||
Sbjct: 247 gttcggttttggcgtcccatcagacccttgaggaaaggataaagatgaataatcacccag 188
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggca 678
| | ||||| ||||| |||||||| |||||||| ||||| || |||||||| |||||
Sbjct: 187 aaagcaaagaaaagcttgccaaagagaggaccccaagattgataaccactgtttatggcg 128
Query: 679 tacgaaattcctgccaccattccgaccaggttaatgacaagaacagtggtcggaggaatg 738
|| || | |||||| |||| ||| ||||| || || | || | ||| || || || ||
Sbjct: 127 taagagactcctgcaaccactccaaccagattgattatgaggagagtagttggtgggata 68
Query: 739 agcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcc 798
|| ||| ||||||| ||||||| ||||||||| | ||| || ||||| |||||||||||
Sbjct: 67 agtaaagtggtccatttgaacatatatagctcggtaaaatcaccatcttcatcagatgct 8
Query: 799 tttga 803
|||||
Sbjct: 7 tttga 3
>gb|CA927446.1|CA927446 MTU6CR.P9.B04 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 648
Score = 95.6 bits (48), Expect = 1e-017
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 1309 gcatgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatc 1368
|||||||| ||||| ||||| |||||||| || || || |||||||||||||| ||||||
Sbjct: 470 gcatgcatcttaaaaccagtaagaatatcttctgtaacagaaccatagatccatccaatc 529
Query: 1369 tcttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttc 1424
|| |||||| || ||||||| |||||| |||||||| |||||||| ||||||||
Sbjct: 530 tcagatccccaatctgttttgttctcatacccacaactaatgacatgaatagcttc 585
Score = 63.9 bits (32), Expect = 4e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 883 ccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccat 942
||||| || ||||||||||| ||||| |||||||| || ||||| |||||||| |||||
Sbjct: 44 ccaccgatgacccaaaactgttcattcctccaccactcatcaatcccaacaccactccac 103
Query: 943 ctaagctccaatataccagtggcaaaaatgga 974
|| | |||||| ||||| || ||||| |||||
Sbjct: 104 ctcatctccaagataccggttgcaaagatgga 135
>gb|CF227502.1|CF227502 PtaD6G2G0214 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 747
Score = 95.6 bits (48), Expect = 1e-017
Identities = 147/180 (81%)
Strand = Plus / Minus
Query: 498 cacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttgg 557
|||||| ||||||||||| ||||| ||||| || | ||||| |||| | ||| || ||
Sbjct: 294 cacccatagcaaggagaaaatagaggcaaggagaactgaccatacaacaatgatagtagg 235
Query: 558 tgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccca 617
||| |||||||| | |||||| |||||||||||||| ||||| ||||| | ||||||||
Sbjct: 234 tgttcggttctggcgtcccatcagacccttgaggaaagggtaaagatgaataatcaccca 175
Query: 618 gatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggc 677
|| | ||||| ||||| |||||||| |||||||| ||||| || |||||||| |||||
Sbjct: 174 gaaagcaaagaaaagcttgccaaagaggggaccccaagattgataaccactgtttatggc 115
>gb|BU815407.1|BU815407 N041C05 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 675
Score = 93.7 bits (47), Expect = 5e-017
Identities = 236/299 (78%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||| |||||||||||||| ||||| || | ||||| || | || || || |||
Sbjct: 299 acccacagtaaggagaagatagaagcaaggagaactgaccacaccacaacaatcgtaggt 240
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|| ||||| || | |||||| |||||||||||||| || || ||||| | |||||||||
Sbjct: 239 gttcggttttggcgtcccatcagacccttgaggaaaggataaagatgaataatcacccag 180
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggca 678
| | ||||| ||||| |||||||| |||||||| ||||| || |||||||| |||||
Sbjct: 179 aaagcaaagaaaagcttgccaaagagaggaccccaagattgataaccactgtttatggcg 120
Query: 679 tacgaaattcctgccaccattccgaccaggttaatgacaagaacagtggtcggaggaatg 738
|| || | |||||| |||| ||| ||||| || || | || | ||| || || || ||
Sbjct: 119 taagagactcctgcaaccactccaaccagattgattatgaggagagtagttggtgggata 60
Query: 739 agcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgc 797
|| ||| ||||||| ||||||| ||||||||| | ||| || ||||| |||||||||||
Sbjct: 59 agtaaagtggtccatttgaacatatatagctcggtaaaatcaccatcttcatcagatgc 1
>gb|BU895617.1|BU895617 X028D07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 571
Score = 93.7 bits (47), Expect = 5e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcc 1392
|||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || ||
Sbjct: 275 atatcctcagtgactgacccatagatccaaccaatctcttttccccattcagtcttctct 216
Query: 1393 tcatatccacaactgatgacatggatagcttcctt 1427
||||| ||||| | ||||||||| || ||||||||
Sbjct: 215 tcatagccacagccgatgacatgaattgcttcctt 181
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1159 taccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacggagc 1218
||||||| ||||| ||||| |||| | ||||||||| || ||||||||||| |||||
Sbjct: 449 taccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatcggagg 390
Query: 1219 acctg 1223
|||||
Sbjct: 389 acctg 385
>gb|CN519879.1|CN519879 GQ0108.B3_I06 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_I06 5', mRNA sequence
Length = 780
Score = 93.7 bits (47), Expect = 5e-017
Identities = 146/179 (81%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
||||| ||||||||||| ||||| ||||| || | ||||| |||| | ||| || |||
Sbjct: 429 acccagagcaaggagaaaatagaggcaaggagaaccgaccatacaacaatgatagtaggt 370
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|| |||||||| | |||||| |||||||||||||| ||||| ||||| | |||||||||
Sbjct: 369 gttcggttctggcgtcccatcagacccttgaggaaagggtaaagatgaataatcacccag 310
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggc 677
| | ||||| ||||| |||||||| |||||||| ||||| || |||||||| |||||
Sbjct: 309 aaagcaaagaaaagcttgccaaagaggggaccccaagattgataaccactgtttatggc 251
Score = 58.0 bits (29), Expect = 3e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
||||||||||||| ||||||||| | ||| || ||||| ||||| ||||| ||||| ||
Sbjct: 180 gtccacttgaacatatatagctcggtaaaatcaccatcttcatcggatgcttttgaagtg 121
Query: 808 actgtgaagttggtatcaatcccagccaacactttcagcag 848
|| || || |||||||| || ||||| | |||||||||||
Sbjct: 120 acagtaaaattggtatctattccagcaaggactttcagcag 80
>gb|DV465848.1|DV465848 MTUNUL1.P43.H11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 879
Score = 93.7 bits (47), Expect = 5e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcc 1392
|||||||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct: 535 atatcctcagtgactgaaccatatatccaaccaatctcttttccccattcagtcttctct 476
Query: 1393 tcatatccacaactgatgacatggatagcttcctt 1427
||||| ||||| | ||||||||| || ||||||||
Sbjct: 475 tcatagccacagccgatgacatgaattgcttcctt 441
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1786 actggaccctgaatgccatccagacctttcatgttgatatcaaagaaaacta 1837
||||| || ||||||||||||| ||||||||||| | ||||||||||||||
Sbjct: 85 actggtccttgaatgccatccaaccctttcatgttaacatcaaagaaaacta 34
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1159 taccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacggagc 1218
||||||| ||||| ||||| |||| | ||||||||| || ||||||||||| |||||
Sbjct: 709 taccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatcggagg 650
Query: 1219 acctg 1223
|||||
Sbjct: 649 acctg 645
>gb|DV466748.1|DV466748 MTUNUL1.P9.G02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 831
Score = 93.7 bits (47), Expect = 5e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcc 1392
|||||||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct: 305 atatcctcagtgactgaaccatatatccaaccaatctcttttccccattcagtcttctct 246
Query: 1393 tcatatccacaactgatgacatggatagcttcctt 1427
||||| ||||| | ||||||||| || ||||||||
Sbjct: 245 tcatagccacagccgatgacatgaattgcttcctt 211
Score = 44.1 bits (22), Expect = 0.040
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 917 aatcttcaatgccaacaccgctccatctaagctc 950
|||||||||||| |||||||||||||| |||||
Sbjct: 724 aatcttcaatgctgacaccgctccatcttagctc 691
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1159 taccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacggagc 1218
||||||| ||||| ||||| |||| | ||||||||| || ||||||||||| |||||
Sbjct: 479 taccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatcggagg 420
Query: 1219 acctg 1223
|||||
Sbjct: 419 acctg 415
>gb|AY573574.1| Populus tremula x Populus tremuloides cellulose synthase (CesA3-2)
mRNA, complete cds
Length = 3358
Score = 93.7 bits (47), Expect = 5e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcc 1392
|||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || ||
Sbjct: 2159 atatcctcagtgactgacccatagatccaaccaatctcttttccccattcagtcttctct 2100
Query: 1393 tcatatccacaactgatgacatggatagcttcctt 1427
||||| ||||| | ||||||||| || ||||||||
Sbjct: 2099 tcatagccacagccgatgacatgaattgcttcctt 2065
Score = 87.7 bits (44), Expect = 3e-015
Identities = 425/552 (76%)
Strand = Plus / Minus
Query: 2049 tgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacatagacaag 2108
|||||||||||| ||||| ||||| |||| |||||||| || | |||||||| || ||
Sbjct: 1446 tgcaccagcctttttgtggtgctggtagccaggtctcttctccctggagacatatactag 1387
Query: 2109 acgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaagaaaacctgaat 2168
||| |||| |||||||| ||| |||| | | ||| | | || | ||| ||||||||
Sbjct: 1386 acgaggtagttcatttccttcaatgtcacgagctccagtatttccaaggaagacctgaat 1327
Query: 2169 catgccaggatggtccctaggattattcccaggccatgcagttccatcagccatggtcca 2228
||||||||| || || | | |||||||||||||| | |||||||| ||| |||||
Sbjct: 1326 catgccagggtgatcacgtgtgttattcccaggccaaggtgttccatcttgcatagtcca 1267
Query: 2229 cccctcttcaggcactttctgtgctttggcaacaagggcattgattcttactttgaattc 2288
|| |||||||| |||||| || || || || |||||||| | || |||||| | ||
Sbjct: 1266 tccttcttcaggtgttttctgagcctttgctaccagggcattaactcggactttgtactc 1207
Query: 2289 ttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttgaattttgtcctt 2348
|||||| ||||| |||||||| | | ||| || || || ||||| |||| ||||| ||
Sbjct: 1206 ttcataatcccttttcattgctctacgttctttcacgaaagaaggctgaaccttgtcttt 1147
Query: 2349 caggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatattgtgctt 2408
|| |||||| ||||| || | |||||||| || || |||||||||||||| || ||
Sbjct: 1146 caagtaatcaattttctgtgagaagtaaaactccggtgctcttggttcaattgagtattt 1087
Query: 2409 cttacaaaagggaacccactttctagcaaattctgcggtttctgagagagactcaaaagt 2468
|| || || ||||||||||| || ||||| || || |||||| ||||| ||||| |
Sbjct: 1086 tttgcagaacggaacccacttccttgcaaactcagctgtttctaccagagattcaaatga 1027
Query: 2469 cagcatagctgaaccatcatcagaaacatagcatgacactttgtcaacagggtaatccac 2528
|||||||||| |||||||||||| || ||||| || ||||| || || || || |||||
Sbjct: 1026 aagcatagctgcaccatcatcagacacgtagcaggaaactttatcgacgggatagtccac 967
Query: 2529 agaaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaatggatccac 2588
|| ||| ||||| | || || ||||| ||||||| |||||| || |||| |||||| ||
Sbjct: 966 agcaaggatggaaaggactgtattggcagtgatcaatggagggtctttcagtggatcaac 907
Query: 2589 tgtactgacgaa 2600
||||| |||||
Sbjct: 906 agtactcacgaa 895
Score = 67.9 bits (34), Expect = 3e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 1774 gttcccacgtaaactggaccctgaatgccatccagacctttcatgttgatatcaaagaaa 1833
||||| ||||| ||||| || ||||||||||||| ||||||||||| | ||||||||||
Sbjct: 1721 gttcctacgtatactggtccttgaatgccatccaaccctttcatgttaacatcaaagaaa 1662
Query: 1834 actatgttccgatt 1847
|||| ||| |||||
Sbjct: 1661 actacgttacgatt 1648
Score = 44.1 bits (22), Expect = 0.040
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 917 aatcttcaatgccaacaccgctccatctaagctc 950
|||||||||||| |||||||||||||| |||||
Sbjct: 2578 aatcttcaatgctgacaccgctccatcttagctc 2545
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1159 taccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacggagc 1218
||||||| ||||| ||||| |||| | ||||||||| || ||||||||||| |||||
Sbjct: 2333 taccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatcggagg 2274
Query: 1219 acctg 1223
|||||
Sbjct: 2273 acctg 2269
>gb|CF232701.1|CF232701 PtaJXO0014G1G0113 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 611
Score = 91.7 bits (46), Expect = 2e-016
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 1311 atgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctc 1370
|||||| ||||| || ||||||||||||||||| | ||||| || |||||||| | |||
Sbjct: 272 atgcatcttaaaacctgtcagaatatcctccgtgatcgaaccgtaaatccagcccagctc 213
Query: 1371 ttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttag 1430
|||||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 212 gagtccccantcagtcttgtcttcatatccacaactgatcacatggatggcttcttttag 153
Query: 1431 tagag 1435
||||
Sbjct: 152 cagag 148
Score = 46.1 bits (23), Expect = 0.010
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 1188 aatttccactgacccaagagcccaacggagcacctgattaagacgatcggaaagattgat 1247
|||||| || || ||||||||||| |||||||| || || || ||||| || ||||||||
Sbjct: 395 aatttcaacagagccaagagcccatcggagcacttggttgagccgatctgatagattgat 336
Query: 1248 tggtgcagaaccctt 1262
|| || ||||||||
Sbjct: 335 gggagctgaaccctt 321
>gb|CF232837.1|CF232837 PtaJXO0016D5D0507 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 770
Score = 89.7 bits (45), Expect = 7e-016
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 1311 atgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctc 1370
|||||| ||||| || |||||||||||||| || | |||||| || |||||||| | |||
Sbjct: 211 atgcatcttaaaacctgtcagaatatcctctgtgattgaaccgtaaatccagcccagctc 152
Query: 1371 ttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttag 1430
|||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 151 gagtccccattcagtcttgtcttcatacccacaactgatcacatggatggcttcttttag 92
Query: 1431 tagag 1435
||||
Sbjct: 91 cagag 87
Score = 48.1 bits (24), Expect = 0.003
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 883 ccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccat 942
|||||||||||||| || |||| ||| ||||||| || ||||||| || |||||||||
Sbjct: 642 ccaccaataacccagaattgctngtttntccaccattcctcaatgcttactccgctccat 583
Query: 943 ct 944
||
Sbjct: 582 ct 581
>gb|CV242542.1|CV242542 WS02515.B21_F16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_F16 3', mRNA sequence
Length = 861
Score = 89.7 bits (45), Expect = 7e-016
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
||||| ||||||||||| ||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 756 gtccatttgaacacataaagctctgcaaaatccccatcctcatcagatgcttttgaagtg 815
Query: 808 actgtgaagttggtatcaatcccagccaacactttca 844
|| ||||||||||||||||| || || | ||||||||
Sbjct: 816 acagtgaagttggtatcaatacctgcaagcactttca 852
Score = 71.9 bits (36), Expect = 2e-010
Identities = 144/180 (80%)
Strand = Plus / Plus
Query: 498 cacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttgg 557
|||||| ||||||||||| || || ||||| || || |||||||| ||||| ||||||||
Sbjct: 506 cacccatagcaaggagaatatggaagcaaggagtatagaccagacgatgacaattgttgg 565
Query: 558 tgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccca 617
||| || || || | |||| | |||||||||||| || || | |||| || |||||
Sbjct: 566 tgtacgattttgtcgacccaacaaacccttgaggaaaggatacaaatgggcaatgaccca 625
Query: 618 gatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggc 677
|| | ||||||||||| ||||||||||||||||| || ||||| || ||||| |||||
Sbjct: 626 aatagcaaagaacagcttgccaaagagcggaccccatgactggtacccgctgtttatggc 685
>gb|CV268371.1|CV268371 WS0205.B21_E18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_E18 3', mRNA sequence
Length = 702
Score = 89.7 bits (45), Expect = 7e-016
Identities = 147/181 (81%)
Strand = Plus / Plus
Query: 498 cacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttgg 557
|||||| ||||||||||| || || ||||| || || |||||||||||||||||||||||
Sbjct: 501 cacccatagcaaggagaaaatggaagcaaggagtatagaccagacaatgacgattgttgg 560
Query: 558 tgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccca 617
||| || || || | |||| | |||||||||||| || || | |||| || |||||
Sbjct: 561 tgtacgattttgtcgacccaacaaacccttgaggaaaggatacaaatgggcaatgaccca 620
Query: 618 gatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggc 677
|| | ||||||||||| ||||||||||||||||| || ||||| || ||||| |||||
Sbjct: 621 aatagcaaagaacagcttgccaaagagcggaccccatgactggtacccgctgtttatggc 680
Query: 678 a 678
|
Sbjct: 681 a 681
>gb|AY162180.1| Populus tremuloides cellulose synthase (CesA7) mRNA, complete cds
Length = 3809
Score = 89.7 bits (45), Expect = 7e-016
Identities = 159/197 (80%)
Strand = Plus / Minus
Query: 1924 ggatccatcatgaagcacattgcttctctaagagctttgctgctattgaagtaatggtcg 1983
|||||||||||||| ||||| ||||||||||| ||| |||| | || | ||||||||
Sbjct: 1957 ggatccatcatgaaacacatggcttctctaagtgctctgctattgttaatataatggtca 1898
Query: 1984 caatccacattgagaagataggcaccatttgtcagcacagcagatacacgaatcagcgca 2043
||||| ||||| |||||||| | |||||| ||| || ||||| || || ||||| | |
Sbjct: 1897 caatcaacattcagaagataaggggcatttgacagaactgcagagacccgcatcagtgaa 1838
Query: 2044 ttcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacatag 2103
||||| || ||||||||||| || || | || ||||||||||| |||||||| |||||
Sbjct: 1837 ttcatggccccagccttcttatggtgttcgaaccctggtctcttctcacgagaaacataa 1778
Query: 2104 acaagacgtggtaactc 2120
|| ||||| ||||||||
Sbjct: 1777 accagacgaggtaactc 1761
Score = 79.8 bits (40), Expect = 7e-013
Identities = 151/188 (80%)
Strand = Plus / Minus
Query: 2407 ttcttacaaaagggaacccactttctagcaaattctgcggtttctgagagagactcaaaa 2466
||||| ||||| ||||||||||| ||||||||||| | || || ||||||| |||||
Sbjct: 1474 ttcttgcaaaatggaacccacttcctagcaaattcagacgtctcggagagagcttcaaat 1415
Query: 2467 gtcagcatagctgaaccatcatcagaaacatagcatgacactttgtcaacagggtaatcc 2526
|| ||||| || | |||||| || || |||||||||| ||||| || ||||| |||||
Sbjct: 1414 gtaagcatggcggcaccatcgtctgacacatagcatgcaactttatccacaggataatca 1355
Query: 2527 acagaaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaatggatcc 2586
|| | ||||| || | ||||||||| || |||||||| |||||||| |||| |||||
Sbjct: 1354 accgcgagaatagagagaacagtgttcgcagtgatcagcggaggttctttcataggatca 1295
Query: 2587 actgtact 2594
||||||||
Sbjct: 1294 actgtact 1287
Score = 73.8 bits (37), Expect = 4e-011
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 2157 gaaaacctgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatc 2216
||||||||||||||||||||||||||| | ||| || |||||||||| |||||||||
Sbjct: 1724 gaaaacctgaatcatgccaggatggtctcgtacattgtttccaggccatggagttccatc 1665
Query: 2217 agccatggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattct 2276
||| ||||| || ||||| || || || |||||| ||| ||| | |||| || ||
Sbjct: 1664 ttgcattgtccaaccatcttccggaaccttttgtgctgtggaaaccaacccatttatcct 1605
Query: 2277 tactttgaattcttcatactccctcttcattgcgcgtctttccttaacaaatg 2329
||||||||||||||||| || |||||||| || || |||||| | |||||||
Sbjct: 1604 cactttgaattcttcatattctctcttcatggcacgcctttccctgacaaatg 1552
Score = 56.0 bits (28), Expect = 1e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcc 1392
|||||||| || || || ||||| |||||||||| || ||||||||||| ||||| ||
Sbjct: 2557 atatcctctgtaacagagccatatatccagccaacttcctttccccattctgttttatct 2498
Query: 1393 tcatatccacaactgatgacatggatagcttc 1424
||||| ||||| ||||| || ||||| |||||
Sbjct: 2497 tcataaccacagctgataacttggatggcttc 2466
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 586 ttgaggaaggggtagagatggaggatcaccca 617
||||||||||||||||| |||||||| |||||
Sbjct: 3301 ttgaggaaggggtagaggtggaggatgaccca 3270
>gb|CA930801.1|CA930801 MTU2TA.P10.D08 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 530
Score = 87.7 bits (44), Expect = 3e-015
Identities = 104/124 (83%)
Strand = Plus / Plus
Query: 2008 ccatttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtga 2067
||||| || |||||||| |||||||||| || |||||||| |||||||| ||||||||
Sbjct: 407 ccattagttagcacagctgatacacgaacaagtgcattcatggcaccagctttcttgtgg 466
Query: 2068 tgctgaaagcctggtctcttttcacgagagacatagacaagacgtggtaactcatttcca 2127
||||| |||||||| | |||||||||||| ||||| || | ||||| | |||||| |||
Sbjct: 467 tgctggaagcctggacgcttttcacgagaaacataaactaaccgtggcagctcattacca 526
Query: 2128 tcag 2131
||||
Sbjct: 527 tcag 530
Score = 69.9 bits (35), Expect = 7e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 1795 tgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatat 1854
||||| ||||||| ||| ||| ||| ||||||||||| || | || ||||| ||||||
Sbjct: 194 tgaataccatccaaacccctcaagtttatatcaaagaacacagtattgcgattggcatat 253
Query: 1855 cgatcgtgcaagtcaatgccatcaaatctctgtggaaattgtacata 1901
||||| | | |||||||||||||||||| ||||||||||| |||||
Sbjct: 254 cgatcattcttgtcaatgccatcaaatctttgtggaaattgaacata 300
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1924 ggatccatcatgaagcacattgcttctct 1952
|||||||||||||| ||||| ||||||||
Sbjct: 323 ggatccatcatgaaacacatagcttctct 351
>gb|AY573572.1| Populus tremula x Populus tremuloides cellulose synthase (CesA2)
mRNA, complete cds
Length = 3991
Score = 87.7 bits (44), Expect = 3e-015
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcc 1392
|||||||| || || || ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct: 2841 atatcctcagtaacagagccataaatccacccaatctcttttccccattcagttttatct 2782
Query: 1393 tcatatccacaactgatgacatggatagcttc 1424
||||| |||||||| |||||||| || |||||
Sbjct: 2781 tcataaccacaactaatgacatgaatggcttc 2750
Score = 77.8 bits (39), Expect = 3e-012
Identities = 180/227 (79%)
Strand = Plus / Minus
Query: 2365 tgagcaaagtaaaattctggagctcttggttcaatattgtgcttcttacaaaagggaacc 2424
|||||||| || |||||||||||| |||||||| || | |||| || || || |||
Sbjct: 1797 tgagcaaaataccattctggagctcgaggttcaatgctgaacctcttgcagaaagggacc 1738
Query: 2425 cactttctagcaaattctgcggtttctgagagagactcaaaagtcagcatagctgaacca 2484
|||||||| |||||||| | || || |||| || |||||||| ||||| || | ||||
Sbjct: 1737 cactttcttgcaaattcagatgtctcagagatagcttcaaaagtaagcatggcagcacca 1678
Query: 2485 tcatcagaaacatagcatgacactttgtcaacagggtaatccacagaaagaatggacaaa 2544
||||| || |||||||||| ||||| || || || ||||| |||| ||| ||||||||
Sbjct: 1677 tcatctgagacatagcatgcaactttttcgactggataatctacagcaaggatggacaag 1618
Query: 2545 acagtgttggctgtgatcagtggaggttccttcaatggatccactgt 2591
|| ||||| || ||||| ||||||||||| |||| ||||| |||||
Sbjct: 1617 actgtgtttgcagtgataagtggaggttctttcataggatcaactgt 1571
Score = 60.0 bits (30), Expect = 7e-007
Identities = 131/162 (80%), Gaps = 2/162 (1%)
Strand = Plus / Minus
Query: 1789 ggaccctgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgatta 1848
||||| || |||||||||| |||||||| |||||||||||||| || | || |||||
Sbjct: 2373 ggaccttgtatgccatccaatcctttcatattgatatcaaagaatacaacattacgattt 2314
Query: 1849 gcatatcgatcgtgcaagtcaatgccatcaaatctctgtggaaattgtacataacaagtt 1908
| |||| ||| || ||||| ||||||||||| || |||||||| ||||||||| ||
Sbjct: 2313 gagtatctatcatgacgatcaatcccatcaaatctttgcggaaattgaacataacaaatt 2254
Query: 1909 ttccttcctaga-gccggatccatcatgaagcacattgcttc 1949
||| |||| ||| | || ||||||||||||||||| |||||
Sbjct: 2253 ttctttcc-agatgttgggtccatcatgaagcacatggcttc 2213
Score = 60.0 bits (30), Expect = 7e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 2161 acctgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatcagcc 2220
||||||||||| |||||||| || || ||||||||| ||||||| ||| ||||| |
Sbjct: 2001 acctgaatcattccaggatgatctctgacattattccctggccatggagtgccatcctgc 1942
Query: 2221 atggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttact 2280
|| ||||| || || ||||| || |||||||| ||||||| | |||| |||| |||
Sbjct: 1941 attgtccaaccatcctcaggaaccttctgtgccgtggcaactaacccatttattcgaact 1882
Query: 2281 ttgaattcttcatactccctcttcat 2306
||||| ||||||||||| ||||||||
Sbjct: 1881 ttgaactcttcatactctctcttcat 1856
Score = 58.0 bits (29), Expect = 3e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 883 ccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacacc 935
|||||||| ||||| |||||||||||||||||||| || | |||||||||||
Sbjct: 3291 ccaccaatgacccagaactgctcatttctccaccagtcatggatgccaacacc 3239
Score = 56.0 bits (28), Expect = 1e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 3433 tcatactcatagcatgggcggcagacagggaaggcacactcattgcaggcaacaaa 3488
|||||||||||||| || | ||| |||||||| ||||| |||||||| ||||||||
Sbjct: 669 tcatactcatagcaaggtctgcacacagggaacgcacattcattgcaagcaacaaa 614
Score = 44.1 bits (22), Expect = 0.040
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 2683 attggataccattttgggaactgatctagaagccaagacaaggcaaacca 2732
||||||||||| ||||| |||||||||| | |||||| | |||||||||
Sbjct: 1479 attggataccactttggaaactgatctaatatccaagaaacggcaaacca 1430
>gb|AJ777820.1|AJ777820 AJ777820 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400035F01F1, mRNA sequence
Length = 658
Score = 85.7 bits (43), Expect = 1e-014
Identities = 181/227 (79%)
Strand = Plus / Minus
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
||||| ||||||| |||| |||||||| || || ||||| || |||||||| || |||
Sbjct: 498 gtccatttgaacaagtataattcagcaaaatcaccgtcctcgtctgatgccttggacgta 439
Query: 808 actgtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaag 867
|| ||||||||||| ||||| ||||| | ||||| |||| || ||||| || || ||
Sbjct: 438 acagtgaagttggtgtcaatgccagcaagtactttgagcaagccttggaaaacagcaaaa 379
Query: 868 agatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatg 927
|||||||| || ||||| |||||||||||||| ||||| |||||||| || |||||
Sbjct: 378 agatgggctgaaacaccaccgataacccaaaactgttcattcctccaccactcatcaatc 319
Query: 928 ccaacaccgctccatctaagctccaatataccagtggcaaaaatgga 974
|||||||| ||||| || | |||||| || || || ||||| |||||
Sbjct: 318 ccaacaccactccacctcatctccaagatgccggttgcaaagatgga 272
Score = 54.0 bits (27), Expect = 4e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 601 agatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattgg 660
||||||| ||||||||||| | |||||| ||||| |||||||| |||||||| || ||
Sbjct: 646 agatggatgatcacccagaatgcgaagaaaagcttgccaaagagtggaccccatgactga 587
Query: 661 tagccactgtt 671
|| ||||||||
Sbjct: 586 taaccactgtt 576
>gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 83.8 bits (42), Expect = 5e-014
Identities = 146/181 (80%)
Strand = Plus / Minus
Query: 497 tcacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttg 556
||||||||| ||| || ||||| ||||||||||| || ||||| || | || || || |
Sbjct: 530 tcacccacaacaangaaaagatggatgcaagaagaatagaccacacgacaacaatggtgg 471
Query: 557 gtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccc 616
|||| |||||||| | ||||| | ||| |||||||| ||||||||||||| ||||||||
Sbjct: 470 gtgtccggttctggcgacccatcaaacctttgaggaaagggtagagatggacgatcaccc 411
Query: 617 agatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatgg 676
||| | ||||| ||||| |||||||| || ||||| || || || |||||||| ||||
Sbjct: 410 agaaggcaaagaaaagcttgccaaagagtgggccccacgactgataaccactgttgatgg 351
Query: 677 c 677
|
Sbjct: 350 c 350
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 883 ccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccat 942
|||||||||||||||||||| || || |||||||| || ||||| |||||||| |||||
Sbjct: 144 ccaccaataacccaaaactgttcgttcctccaccattcatcaatcccaacaccactccac 85
Query: 943 ctaagctccaatataccagtggcaaaaatgga 974
|| | |||||| ||||| || ||||| |||||
Sbjct: 84 ctcatctccaaaataccggttgcaaagatgga 53
>gb|BP924070.1|BP924070 BP924070 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-027_K15.f 5', mRNA sequence
Length = 535
Score = 83.8 bits (42), Expect = 5e-014
Identities = 210/266 (78%)
Strand = Plus / Minus
Query: 1156 ccataccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacgg 1215
|||||||| || |||||||| | ||| || |||||||| || || || |||||||| ||
Sbjct: 535 ccataccaaattggacaatgccgactgagaagaatttcaacagaacctagagcccatcga 476
Query: 1216 agcacctgattaagacgatcggaaagattgattggtgcagaacccttgaaacaaggtcgt 1275
||||| || || |||||||| |||||||| || || ||||| || || || || |||
Sbjct: 475 agcacttggttcagacgatcagaaagattaataggagcagaccctttaaaggctgggcgt 416
Query: 1276 ggtggcatgcagtagattgattgccagccccttgcatgcattttaaacccagtcagaata 1335
||||||||||| ||||| |||| || | |||||||| || || ||||| ||||||
Sbjct: 415 ttgggcatgcagtaaattgaccgccaaccacgggcatgcatcttgaatccagtaagaata 356
Query: 1336 tcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcctca 1395
|| || || || |||||||||||||| || ||||| |||||| || |||||||||||
Sbjct: 355 tcttctgtaacagaaccatagatccatcctatctcagatccccaatctgttttgtcctcg 296
Query: 1396 tatccacaactgatgacatggatagc 1421
|| ||||| ||||||||||| |||||
Sbjct: 295 taaccacagctgatgacatgaatagc 270
>gb|AF072131.1|AF072131 Populus tremuloides secondary xylem cellulose synthase (celA) mRNA,
complete cds
Length = 3232
Score = 83.8 bits (42), Expect = 5e-014
Identities = 318/410 (77%)
Strand = Plus / Minus
Query: 2191 ttattcccaggccatgcagttccatcagccatggtccacccctcttcaggcactttctgt 2250
|||||||||||||| | |||||||| ||| ||||| || |||||||| ||||||
Sbjct: 1243 ttattcccaggccaaggtgttccatcttgcatagtccatccttcttcaggtgttttctga 1184
Query: 2251 gctttggcaacaagggcattgattcttactttgaattcttcatactccctcttcattgcg 2310
|| || || || |||||||| | || |||||| | |||||||| ||||| ||||||||
Sbjct: 1183 gcctttgctaccagggcattaactcggactttgtactcttcataatcccttttcattgct 1124
Query: 2311 cgtctttccttaacaaatgaaggttgaattttgtccttcaggtaatctattttttgagca 2370
| | ||| || || || |||||||||| ||||| |||| |||||| ||||| || |
Sbjct: 1123 ctacgttctttcacgaaagaaggttgaaccttgtctttcaagtaatcaattttctgtgag 1064
Query: 2371 aagtaaaattctggagctcttggttcaatattgtgcttcttacaaaagggaacccacttt 2430
|||||||| || || |||||||||||||| | || || || || |||||||||||
Sbjct: 1063 aagtaaaactccggtgctcttggttcaattgagaattttttgcagaacggaacccacttc 1004
Query: 2431 ctagcaaattctgcggtttctgagagagactcaaaagtcagcatagctgaaccatcatca 2490
|| ||||| || || |||||| ||||| ||||| | |||||||||| ||||||||||
Sbjct: 1003 cttgcaaactcagctgtttctacaagagattcaaatgaaagcatagctgcaccatcatca 944
Query: 2491 gaaacatagcatgacactttgtcaacagggtaatccacagaaagaatggacaaaacagtg 2550
|| || ||||| || ||||| || || || || ||||||| ||| ||||| | || ||
Sbjct: 943 gacacgtagcaggagactttatcgacgggatagtccacagcaaggatggaaaggactgta 884
Query: 2551 ttggctgtgatcagtggaggttccttcaatggatccactgtactgacgaa 2600
||||| ||||||| ||| |||||||||| ||||| || ||||| |||||
Sbjct: 883 ttggcagtgatcaatggcggttccttcagcggatcaacagtactcacgaa 834
Score = 69.9 bits (35), Expect = 7e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcc 1392
|||||||| || ||||| ||||| ||||| ||||||| ||||||||||||||| || ||
Sbjct: 2101 atatcctcagtgactgacccatatatccaaccaatctgttttccccattcagtcttctct 2042
Query: 1393 tcatatccacaactgatgacatggatagcttcctt 1427
||||| ||||| | |||||| || || ||||||||
Sbjct: 2041 tcatagccacagccgatgacttgaatcgcttcctt 2007
Score = 67.9 bits (34), Expect = 3e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 1774 gttcccacgtaaactggaccctgaatgccatccagacctttcatgttgatatcaaagaaa 1833
||||| ||||| ||||| || ||||||||||||| ||||||||||| | ||||||||||
Sbjct: 1663 gttcctacgtatactggtccttgaatgccatccaaccctttcatgttaacatcaaagaaa 1604
Query: 1834 actatgttccgatt 1847
|||| ||| |||||
Sbjct: 1603 actacgttacgatt 1590
Score = 46.1 bits (23), Expect = 0.010
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 2049 tgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacatagacaag 2108
|||||||||||| ||||| ||||| |||| |||||||| || | |||||||| || ||
Sbjct: 1388 tgcaccagcctttttgtggtgctggtagccaggtctcttctccctggagacatatactag 1329
Query: 2109 acgtggtaactcatttccatcagtgtc 2135
||| |||| |||||||| ||| ||||
Sbjct: 1328 acgaggtagttcatttccttcaatgtc 1302
Score = 44.1 bits (22), Expect = 0.040
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 917 aatcttcaatgccaacaccgctccatctaagctc 950
|||||||||||| |||||||||||||| |||||
Sbjct: 2520 aatcttcaatgctgacaccgctccatcttagctc 2487
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1159 taccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacggagc 1218
||||||| ||||| ||||| |||| | ||||||||| || ||||||||||| |||||
Sbjct: 2275 taccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatcggagg 2216
Query: 1219 acctg 1223
|||||
Sbjct: 2215 acctg 2211
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 486,641
Number of Sequences: 369679
Number of extensions: 486641
Number of successful extensions: 137234
Number of sequences better than 0.5: 187
Number of HSP's better than 0.5 without gapping: 186
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 136511
Number of HSP's gapped (non-prelim): 654
length of query: 3838
length of database: 203,408,664
effective HSP length: 20
effective length of query: 3818
effective length of database: 196,015,084
effective search space: 748385590712
effective search space used: 748385590712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)