BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI127236.1|BI127236 G057P38Y Populus cambium cDNA librar... 38 0.38
gb|CK107785.1|CK107785 G057P38 Populus tension wood cDNA li... 38 0.38
gb|DT517655.1|DT517655 WS02434.B21_O20 PTxD-ICC-N-A-14 Popu... 38 0.38
>gb|BI127236.1|BI127236 G057P38Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 327
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 258 ggcagatggtgacgccgtc 276
|||||||||||||||||||
Sbjct: 143 ggcagatggtgacgccgtc 161
>gb|CK107785.1|CK107785 G057P38 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G057P38 5', mRNA sequence
Length = 332
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 258 ggcagatggtgacgccgtc 276
|||||||||||||||||||
Sbjct: 143 ggcagatggtgacgccgtc 161
>gb|DT517655.1|DT517655 WS02434.B21_O20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_O20 3', mRNA sequence
Length = 911
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 88 cacaatgcaagcacaaaag 106
|||||||||||||||||||
Sbjct: 787 cacaatgcaagcacaaaag 769
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,640
Number of Sequences: 369679
Number of extensions: 47640
Number of successful extensions: 11686
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11683
Number of HSP's gapped (non-prelim): 3
length of query: 617
length of database: 203,408,664
effective HSP length: 19
effective length of query: 598
effective length of database: 196,384,763
effective search space: 117438088274
effective search space used: 117438088274
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)