BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419417.2.5
         (733 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU866443.1|BU866443  S066G12 Populus imbibed seed cDNA li...    52   3e-005
gb|DN488992.1|DN488992  S066G12.3pR Populus imbibed seed cDN...    52   3e-005
gb|DN498729.1|DN498729  S066G12.5pR Populus imbibed seed cDN...    52   3e-005
gb|CN521503.1|CN521503  GQ0112.B3_H14 GQ011 Populus trichoca...    38   0.46 

>gb|BU866443.1|BU866443 S066G12 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 745

 Score = 52.0 bits (26), Expect = 3e-005
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 209 gcgtggtcgttgctggacaactgggaatgg 238
           |||||||| |||||||||||||||||||||
Sbjct: 714 gcgtggtctttgctggacaactgggaatgg 743



>gb|DN488992.1|DN488992 S066G12.3pR Populus imbibed seed cDNA library Populus tremula cDNA
           clone S066G12 3', mRNA sequence
          Length = 824

 Score = 52.0 bits (26), Expect = 3e-005
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 209 gcgtggtcgttgctggacaactgggaatgg 238
           |||||||| |||||||||||||||||||||
Sbjct: 267 gcgtggtctttgctggacaactgggaatgg 238



>gb|DN498729.1|DN498729 S066G12.5pR Populus imbibed seed cDNA library Populus tremula cDNA
           clone S066G12 5', mRNA sequence
          Length = 774

 Score = 52.0 bits (26), Expect = 3e-005
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 209 gcgtggtcgttgctggacaactgggaatgg 238
           |||||||| |||||||||||||||||||||
Sbjct: 735 gcgtggtctttgctggacaactgggaatgg 764



>gb|CN521503.1|CN521503 GQ0112.B3_H14 GQ011 Populus trichocarpa x Populus deltoides cDNA
          clone GQ0112_H14 5', mRNA sequence
          Length = 427

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 51 tttacatcactgaaaatgg 69
          |||||||||||||||||||
Sbjct: 7  tttacatcactgaaaatgg 25



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,881
Number of Sequences: 369679
Number of extensions: 65881
Number of successful extensions: 19574
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19570
Number of HSP's gapped (non-prelim): 4
length of query: 733
length of database: 203,408,664
effective HSP length: 19
effective length of query: 714
effective length of database: 196,384,763
effective search space: 140218720782
effective search space used: 140218720782
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)