BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.1
(1293 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV255713.1|CV255713 WS02414.B21_N07 PTxD-ICC-N-A-14 Popu... 48 8e-004
gb|CX654171.1|CX654171 PO02014B12 Poplar SC cDNA library Po... 48 8e-004
gb|CX657203.1|CX657203 PO02033D09 Poplar SC cDNA library Po... 48 8e-004
gb|DT508630.1|DT508630 WS02421.BR_I02 PTxD-ICC-N-A-14 Popul... 48 8e-004
gb|DT513237.1|DT513237 WS02421.B21_I02 PTxD-ICC-N-A-14 Popu... 48 8e-004
gb|BI129567.1|BI129567 G092P59Y Populus cambium cDNA librar... 46 0.003
gb|BI130835.1|BI130835 G111P44Y Populus cambium cDNA librar... 46 0.003
gb|BU837702.1|BU837702 T104G07 Populus apical shoot cDNA li... 46 0.003
gb|CK102816.1|CK102816 G092P59.5pR Populus tension wood cDN... 46 0.003
gb|CV254870.1|CV254870 WS02411.B21_G21 PTxD-ICC-N-A-14 Popu... 46 0.003
gb|BI122106.1|BI122106 I002P45P Populus leaf cDNA library P... 44 0.013
gb|BI129086.1|BI129086 G085P72Y Populus cambium cDNA librar... 44 0.013
gb|BU866283.1|BU866283 S064H09 Populus imbibed seed cDNA li... 44 0.013
gb|BU874543.1|BU874543 Q069C02 Populus flower cDNA library ... 44 0.013
gb|BU882329.1|BU882329 UM75TF01 Populus flower cDNA library... 44 0.013
gb|CK092503.1|CK092503 G085P72.3pR Populus tension wood cDN... 44 0.013
gb|CK102640.1|CK102640 G085P72.5pR Populus tension wood cDN... 44 0.013
gb|CK103872.1|CK103872 I002P45.5pR Populus senescing leaves... 44 0.013
gb|CK108355.1|CK108355 GO85P72 Populus tension wood cDNA li... 44 0.013
gb|CN519598.1|CN519598 GQ0101.B3_P08 GQ010 Populus trichoca... 44 0.013
gb|CV239260.1|CV239260 WS0231.B21_N13 PT-MB-A-13 Populus tr... 44 0.013
gb|CV257849.1|CV257849 WS0247.B21_N05 PTxD-ICC-N-A-14 Popul... 44 0.013
gb|CX168290.1|CX168290 B05_69-90_03.ab1 leaf inoculated wit... 44 0.013
gb|CX176753.1|CX176753 E07_69-47_09.ab1 leaf inoculated wit... 44 0.013
gb|CX183121.1|CX183121 F01_45-28_11.ab1 leaf inoculated wit... 44 0.013
gb|CX657499.1|CX657499 PO02048E04 Poplar SC cDNA library Po... 44 0.013
gb|DT477177.1|DT477177 WS02519.BR_D08 PT-MB-N-A-15 Populus ... 44 0.013
gb|DT478036.1|DT478036 WS02521.BR_K20 PT-MB-N-A-15 Populus ... 44 0.013
gb|DT478977.1|DT478977 WS02524.BR_G02 PT-MB-N-A-15 Populus ... 44 0.013
gb|DT479921.1|DT479921 WS02527.BR_G01 PT-MB-N-A-15 Populus ... 44 0.013
gb|DT480104.1|DT480104 WS02527.BR_P02 PT-MB-N-A-15 Populus ... 44 0.013
gb|DT481735.1|DT481735 WS02532.BR_M08 PT-MB-N-A-15 Populus ... 44 0.013
gb|DT482212.1|DT482212 WS02519.B21_D08 PT-MB-N-A-15 Populus... 44 0.013
gb|DT484077.1|DT484077 WS02524.B21_G02 PT-MB-N-A-15 Populus... 44 0.013
gb|DT485337.1|DT485337 WS02527.B21_P02 PT-MB-N-A-15 Populus... 44 0.013
gb|DT487098.1|DT487098 WS02532.B21_M08 PT-MB-N-A-15 Populus... 44 0.013
gb|DT505091.1|DT505091 WS01810.C21_A01 PTxD-IL-N-A-9 Populu... 44 0.013
gb|DT508332.1|DT508332 WS02420.BR_K24 PTxD-ICC-N-A-14 Popul... 44 0.013
gb|DT512945.1|DT512945 WS02420.B21_K24 PTxD-ICC-N-A-14 Popu... 44 0.013
gb|DT518401.1|DT518401 WS02438.B21_A16 PTxD-ICC-N-A-14 Popu... 44 0.013
gb|AI165268.1|AI165268 A080P16U Hybrid aspen plasmid librar... 42 0.052
gb|BI124124.1|BI124124 I036P38P Populus leaf cDNA library P... 42 0.052
gb|BI126181.1|BI126181 I071P61P Populus leaf cDNA library P... 42 0.052
gb|BU828549.1|BU828549 K024P92P Populus apical shoot cDNA l... 42 0.052
gb|BU879240.1|BU879240 V057F12 Populus flower cDNA library ... 42 0.052
gb|BU886537.1|BU886537 R047B01 Populus root cDNA library Po... 42 0.052
gb|BU888602.1|BU888602 P010B01 Populus petioles cDNA librar... 42 0.052
gb|BU888603.1|BU888603 P010B02 Populus petioles cDNA librar... 42 0.052
gb|BU893156.1|BU893156 P074A06 Populus petioles cDNA librar... 42 0.052
gb|CA823128.1|CA823128 R21C03 two-month-old roots from clon... 42 0.052
gb|CA826131.1|CA826131 R73C01 two-month-old roots from clon... 42 0.052
gb|CK099671.1|CK099671 A080P16.5pR Hybrid aspen plasmid lib... 42 0.052
gb|CK113794.1|CK113794 UR112TD10 Populus root cDNA library ... 42 0.052
gb|CK319008.1|CK319008 X9P05g12 Populus stem seasonal libra... 42 0.052
gb|AJ767321.1|AJ767321 AJ767321 Populus euphratica leaf adu... 42 0.052
gb|AJ773044.1|AJ773044 AJ773044 Populus euphratica leaf 3-6... 42 0.052
gb|AJ779024.1|AJ779024 AJ779024 Populus euphratica cambium ... 42 0.052
gb|CV238661.1|CV238661 WS0127.B21.1_I14 PT-GT-FL-A-3 Populu... 42 0.052
gb|CV243057.1|CV243057 WS02516.B21.1_M13 PT-MB-N-A-15 Popul... 42 0.052
gb|CV244876.1|CV244876 WS0255.B21_N21 PT-MB-N-A-15 Populus ... 42 0.052
gb|CV256188.1|CV256188 WS0243.B21_C20 PTxD-ICC-N-A-14 Popul... 42 0.052
gb|CX178451.1|CX178451 H07_45-14_15.ab1 leaf inoculated wit... 42 0.052
gb|DN483643.1|DN483643 PSO201E12 Populus tomentiglandulosa ... 42 0.052
gb|DN484827.1|DN484827 K024P92.3pR Populus apical shoot cDN... 42 0.052
gb|DN494306.1|DN494306 K024P92.5pR Populus apical shoot cDN... 42 0.052
gb|DT475572.1|DT475572 WS0127.BR_I14 PT-GT-FL-A-3 Populus t... 42 0.052
gb|DT481519.1|DT481519 WS02532.BR_B16 PT-MB-N-A-15 Populus ... 42 0.052
gb|DT484179.1|DT484179 WS02524.B21_K19 PT-MB-N-A-15 Populus... 42 0.052
gb|DT487157.1|DT487157 WS02532.B21_O23 PT-MB-N-A-15 Populus... 42 0.052
gb|DT488108.1|DT488108 WS02535.B21_I13 PT-MB-N-A-15 Populus... 42 0.052
gb|DT489384.1|DT489384 WS02542.B21_B07 PT-MB-N-A-15 Populus... 42 0.052
gb|DT507904.1|DT507904 WS02419.BR_I12 PTxD-ICC-N-A-14 Popul... 42 0.052
gb|DT511212.1|DT511212 WS02429.BR_N17 PTxD-ICC-N-A-14 Popul... 42 0.052
gb|DT511254.1|DT511254 WS02429.BR_P13 PTxD-ICC-N-A-14 Popul... 42 0.052
gb|DT512531.1|DT512531 WS02419.B21_I12 PTxD-ICC-N-A-14 Popu... 42 0.052
gb|DT515906.1|DT515906 WS02429.B21.1_N17 PTxD-ICC-N-A-14 Po... 42 0.052
gb|DT515946.1|DT515946 WS02429.B21.1_P13 PTxD-ICC-N-A-14 Po... 42 0.052
gb|DT518591.1|DT518591 WS02438.B21_K06 PTxD-ICC-N-A-14 Popu... 42 0.052
gb|DT519346.1|DT519346 WS02441.B21_D09 PTxD-ICC-N-A-14 Popu... 42 0.052
gb|DT519751.1|DT519751 WS02443.B21_J03 PTxD-ICC-N-A-14 Popu... 42 0.052
gb|DT520928.1|DT520928 WS02448.B21_P01 PTxD-ICC-N-A-14 Popu... 42 0.052
gb|BU831488.1|BU831488 T022B05 Populus apical shoot cDNA li... 40 0.21
gb|BU894802.1|BU894802 X015C03 Populus wood cDNA library Po... 40 0.21
gb|BU895257.1|BU895257 X021D07 Populus wood cDNA library Po... 40 0.21
gb|CF229293.1|CF229293 PtaXM0023F4F0412 Poplar cDNA library... 40 0.21
gb|CK093864.1|CK093864 I002P45.3pR Populus senescing leaves... 40 0.21
gb|CK106550.1|CK106550 UB24CPF04.5pR Populus active cambium... 40 0.21
gb|CN524337.1|CN524337 GQ015M15.T3_H05 GQ015 Populus tricho... 40 0.21
gb|AJ773797.1|AJ773797 AJ773797 Populus euphratica shoot 3-... 40 0.21
gb|CV230854.1|CV230854 WS0192.B21_N04 PT-DX-N-A-10 Populus ... 40 0.21
gb|CV263878.1|CV263878 WS02023.B21_A12 PTxN-IB-N-A-11 Popul... 40 0.21
gb|CV270162.1|CV270162 WS0151.B21_E04 PTxN-IB-A-6 Populus t... 40 0.21
gb|CV279197.1|CV279197 WS0148.B21_L13 PTxD-IL-A-5 Populus t... 40 0.21
gb|CV280075.1|CV280075 WS0134.B21_K23 PTxD-IL-FL-A-4 Populu... 40 0.21
gb|CX174053.1|CX174053 H05_69-32_15.ab1 leaf inoculated wit... 40 0.21
gb|DT505216.1|DT505216 WS01810.C21_F08 PTxD-IL-N-A-9 Populu... 40 0.21
gb|DT505227.1|DT505227 WS01810.C21_F19 PTxD-IL-N-A-9 Populu... 40 0.21
gb|DT505858.1|DT505858 WS01812.C21_A18 PTxD-IL-N-A-9 Populu... 40 0.21
gb|DT516909.1|DT516909 WS02432.B21_M05 PTxD-ICC-N-A-14 Popu... 40 0.21
gb|DT522642.1|DT522642 WS02037.B21_I19 PTxN-IB-N-A-11 Popul... 40 0.21
gb|DT526590.1|DT526590 WS02048.C21_H03 PTxN-IB-N-A-11 Popul... 40 0.21
>gb|CV255713.1|CV255713 WS02414.B21_N07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_N07 3', mRNA sequence
Length = 706
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttctcc 1229
||||||||||||||||||||||||
Sbjct: 475 atcatcatcatcttcttcttctcc 452
>gb|CX654171.1|CX654171 PO02014B12 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO02014B12 5', mRNA sequence
Length = 554
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttctcc 1229
||||||||||||||||||||||||
Sbjct: 300 atcatcatcatcttcttcttctcc 323
>gb|CX657203.1|CX657203 PO02033D09 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO02033D09 5', mRNA sequence
Length = 490
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttctcc 1229
||||||||||||||||||||||||
Sbjct: 301 atcatcatcatcttcttcttctcc 324
>gb|DT508630.1|DT508630 WS02421.BR_I02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_I02 5', mRNA sequence
Length = 814
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttctcc 1229
||||||||||||||||||||||||
Sbjct: 340 atcatcatcatcttcttcttctcc 363
>gb|DT513237.1|DT513237 WS02421.B21_I02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_I02 3', mRNA sequence
Length = 814
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttctcc 1229
||||||||||||||||||||||||
Sbjct: 475 atcatcatcatcttcttcttctcc 452
>gb|BI129567.1|BI129567 G092P59Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 263
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1205 tatcatcatcatcttcttcttct 1227
|||||||||||||||||||||||
Sbjct: 48 tatcatcatcatcttcttcttct 26
>gb|BI130835.1|BI130835 G111P44Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 471
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1205 tatcatcatcatcttcttcttct 1227
|||||||||||||||||||||||
Sbjct: 114 tatcatcatcatcttcttcttct 92
>gb|BU837702.1|BU837702 T104G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 689
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1205 tatcatcatcatcttcttcttct 1227
|||||||||||||||||||||||
Sbjct: 633 tatcatcatcatcttcttcttct 611
>gb|CK102816.1|CK102816 G092P59.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G092P59 5', mRNA sequence
Length = 567
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1205 tatcatcatcatcttcttcttct 1227
|||||||||||||||||||||||
Sbjct: 52 tatcatcatcatcttcttcttct 30
>gb|CV254870.1|CV254870 WS02411.B21_G21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_G21 3', mRNA sequence
Length = 886
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1205 tatcatcatcatcttcttcttct 1227
|||||||||||||||||||||||
Sbjct: 612 tatcatcatcatcttcttcttct 634
>gb|BI122106.1|BI122106 I002P45P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 354
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 231 atcatcatcatcttcttcttct 252
>gb|BI129086.1|BI129086 G085P72Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 434
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 71 atcatcatcatcttcttcttct 50
>gb|BU866283.1|BU866283 S064H09 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 577
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 189 atcatcatcatcttcttcttct 168
>gb|BU874543.1|BU874543 Q069C02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 650
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 218 atcatcatcatcttcttcttct 239
>gb|BU882329.1|BU882329 UM75TF01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 480
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 197 atcatcatcatcttcttcttct 176
>gb|CK092503.1|CK092503 G085P72.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G085P72 3', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 499 atcatcatcatcttcttcttct 520
>gb|CK102640.1|CK102640 G085P72.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G085P72 5', mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 71 atcatcatcatcttcttcttct 50
>gb|CK103872.1|CK103872 I002P45.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I002P45 5', mRNA sequence
Length = 597
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 242 atcatcatcatcttcttcttct 263
>gb|CK108355.1|CK108355 GO85P72 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone GO85P72 5', mRNA sequence
Length = 519
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 71 atcatcatcatcttcttcttct 50
>gb|CN519598.1|CN519598 GQ0101.B3_P08 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0101_P08 5', mRNA sequence
Length = 522
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 285 atcatcatcatcttcttcttct 264
>gb|CV239260.1|CV239260 WS0231.B21_N13 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_N13
3', mRNA sequence
Length = 773
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 736 atcatcatcatcttcttcttct 757
>gb|CV257849.1|CV257849 WS0247.B21_N05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_N05 3', mRNA sequence
Length = 763
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 152 atcatcatcatcttcttcttct 131
>gb|CX168290.1|CX168290 B05_69-90_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 15 atcatcatcatcttcttcttct 36
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttctcc 1229
||||||||| ||||||||||||||
Sbjct: 18 atcatcatcttcttcttcttctcc 41
>gb|CX176753.1|CX176753 E07_69-47_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 234 atcatcatcatcttcttcttct 255
>gb|CX183121.1|CX183121 F01_45-28_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 138 atcatcatcatcttcttcttct 117
>gb|CX657499.1|CX657499 PO02048E04 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO02048E04 5', mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 254 atcatcatcatcttcttcttct 233
>gb|DT477177.1|DT477177 WS02519.BR_D08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_D08 5', mRNA sequence
Length = 773
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 182 atcatcatcatcttcttcttct 203
>gb|DT478036.1|DT478036 WS02521.BR_K20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_K20 5', mRNA sequence
Length = 851
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 207 atcatcatcatcttcttcttct 186
>gb|DT478977.1|DT478977 WS02524.BR_G02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_G02 5', mRNA sequence
Length = 845
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 183 atcatcatcatcttcttcttct 204
>gb|DT479921.1|DT479921 WS02527.BR_G01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_G01 5', mRNA sequence
Length = 892
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 254 atcatcatcatcttcttcttct 233
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttctcc 1229
||||||||| ||||||||||||||
Sbjct: 251 atcatcatcttcttcttcttctcc 228
>gb|DT480104.1|DT480104 WS02527.BR_P02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_P02 5', mRNA sequence
Length = 781
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 200 atcatcatcatcttcttcttct 221
>gb|DT481735.1|DT481735 WS02532.BR_M08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_M08 5', mRNA sequence
Length = 593
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 289 atcatcatcatcttcttcttct 310
>gb|DT482212.1|DT482212 WS02519.B21_D08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_D08 3', mRNA sequence
Length = 774
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 593 atcatcatcatcttcttcttct 572
>gb|DT484077.1|DT484077 WS02524.B21_G02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_G02 3', mRNA sequence
Length = 866
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 689 atcatcatcatcttcttcttct 668
>gb|DT485337.1|DT485337 WS02527.B21_P02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_P02 3', mRNA sequence
Length = 781
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 582 atcatcatcatcttcttcttct 561
>gb|DT487098.1|DT487098 WS02532.B21_M08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_M08 3', mRNA sequence
Length = 593
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 305 atcatcatcatcttcttcttct 284
>gb|DT505091.1|DT505091 WS01810.C21_A01 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides
cDNA clone WS01810_A01 3', mRNA sequence
Length = 927
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 806 atcatcatcatcttcttcttct 827
>gb|DT508332.1|DT508332 WS02420.BR_K24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_K24 5', mRNA sequence
Length = 784
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 197 atcatcatcatcttcttcttct 218
>gb|DT512945.1|DT512945 WS02420.B21_K24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_K24 3', mRNA sequence
Length = 784
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 588 atcatcatcatcttcttcttct 567
>gb|DT518401.1|DT518401 WS02438.B21_A16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_A16 3', mRNA sequence
Length = 307
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttcttct 1227
||||||||||||||||||||||
Sbjct: 160 atcatcatcatcttcttcttct 181
>gb|AI165268.1|AI165268 A080P16U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 396
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttcttct 1227
|||||||||||||||||||||
Sbjct: 354 tcatcatcatcttcttcttct 334
>gb|BI124124.1|BI124124 I036P38P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 412
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttcttct 1227
|||||||||||||||||||||
Sbjct: 215 tcatcatcatcttcttcttct 195
>gb|BI126181.1|BI126181 I071P61P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 497
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttcttct 1227
|||||||||||||||||||||
Sbjct: 331 tcatcatcatcttcttcttct 311
>gb|BU828549.1|BU828549 K024P92P Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 336
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1209 atcatcatcttcttcttctcc 1229
|||||||||||||||||||||
Sbjct: 143 atcatcatcttcttcttctcc 123
>gb|BU879240.1|BU879240 V057F12 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttc 1226
|||||||||||||||||||||
Sbjct: 178 atcatcatcatcttcttcttc 158
>gb|BU886537.1|BU886537 R047B01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 326
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttcttct 1227
|||||||||||||||||||||
Sbjct: 55 tcatcatcatcttcttcttct 35
>gb|BU888602.1|BU888602 P010B01 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 386
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttcttct 1227
|||||||||||||||||||||
Sbjct: 115 tcatcatcatcttcttcttct 95
>gb|BU888603.1|BU888603 P010B02 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 386
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttcttct 1227
|||||||||||||||||||||
Sbjct: 115 tcatcatcatcttcttcttct 95
>gb|BU893156.1|BU893156 P074A06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 737
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttcttct 1227
|||||||||||||||||||||
Sbjct: 521 tcatcatcatcttcttcttct 501
>gb|CA823128.1|CA823128 R21C03 two-month-old roots from clone 'Beaupre' Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttc 1226
|||||||||||||||||||||
Sbjct: 137 atcatcatcatcttcttcttc 117
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187,624
Number of Sequences: 369679
Number of extensions: 187624
Number of successful extensions: 57729
Number of sequences better than 0.5: 101
Number of HSP's better than 0.5 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57370
Number of HSP's gapped (non-prelim): 359
length of query: 1293
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1274
effective length of database: 196,384,763
effective search space: 250194188062
effective search space used: 250194188062
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)