BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419137.2.1
         (989 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX178239.1|CX178239  C11_45-99_05.ab1 leaf inoculated wit...    42   0.040
gb|AF185574.2|  Populus tremuloides transcription factor MAG...    40   0.16 

>gb|CX178239.1|CX178239 C11_45-99_05.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 439

 Score = 42.1 bits (21), Expect = 0.040
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 46  tggaagcggtggcggcggcggatctggcggcgg 78
           |||||| |||||||||||||| | |||||||||
Sbjct: 404 tggaagtggtggcggcggcggttatggcggcgg 436



>gb|AF185574.2| Populus tremuloides transcription factor MAGL4 mRNA, complete cds
          Length = 1195

 Score = 40.1 bits (20), Expect = 0.16
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   gaattcgcggccgcgtcgac 28
           ||||||||||||||||||||
Sbjct: 104 gaattcgcggccgcgtcgac 123



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,817
Number of Sequences: 369679
Number of extensions: 96817
Number of successful extensions: 27671
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27666
Number of HSP's gapped (non-prelim): 5
length of query: 989
length of database: 203,408,664
effective HSP length: 19
effective length of query: 970
effective length of database: 196,384,763
effective search space: 190493220110
effective search space used: 190493220110
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)