BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus ... 64 8e-009
gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus t... 64 8e-009
gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus ... 64 8e-009
gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus ... 64 8e-009
gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Popul... 64 8e-009
gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichoca... 60 1e-007
gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA librar... 56 2e-006
gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA librar... 52 3e-005
gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA librar... 52 3e-005
gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA librar... 52 3e-005
gb|CV227499.1|CV227499 WS0167.B21_F18 PT-DX-A-7 Populus tri... 50 1e-004
gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cD... 48 5e-004
gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA li... 48 5e-004
gb|BU881855.1|BU881855 UM68TD08 Populus flower cDNA library... 48 5e-004
gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Po... 48 5e-004
gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid lib... 48 5e-004
gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichoca... 48 5e-004
gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichoca... 48 5e-004
gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in... 48 5e-004
gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus ... 48 5e-004
gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus... 48 5e-004
gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus... 48 5e-004
gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Popul... 48 5e-004
gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus t... 48 5e-004
gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated wit... 48 5e-004
gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Pop... 48 5e-004
gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Po... 46 0.002
gb|BU813345.1|BU813345 N009C11 Populus bark cDNA library Po... 42 0.028
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.11
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.11
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.11
gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA librar... 40 0.11
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.44
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.44
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 38 0.44
>gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_H14 3', mRNA sequence
Length = 677
Score = 63.9 bits (32), Expect = 8e-009
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 252 atgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|||||||||| |||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 494 atgacggtgcaggacatctttgtatgcattcttgctttcatgccaactggctgggg 439
Score = 44.1 bits (22), Expect = 0.007
Identities = 78/98 (79%)
Strand = Plus / Minus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||| ||||| || | || ||||| |||||||||||
Sbjct: 335 ctcctgttcactccagttgcattccttgcctggtttccatttgtgtctgaattccagact 276
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
| |||||||||||||| || || || || ||||||||
Sbjct: 275 cgtatgctgttcaaccaagcatttagtagaggtctgca 238
>gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_N04 3', mRNA sequence
Length = 722
Score = 63.9 bits (32), Expect = 8e-009
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 252 atgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|||||||||| |||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 494 atgacggtgcaggacatctttgtatgcattcttgctttcatgccaactggctgggg 439
Score = 44.1 bits (22), Expect = 0.007
Identities = 78/98 (79%)
Strand = Plus / Minus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||| ||||| || | || ||||| |||||||||||
Sbjct: 335 ctcctgttcactccagttgcattccttgcctggtttccatttgtgtctgaattccagact 276
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
| |||||||||||||| || || || || ||||||||
Sbjct: 275 cgtatgctgttcaaccaagcatttagtagaggtctgca 238
>gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 3', mRNA sequence
Length = 595
Score = 63.9 bits (32), Expect = 8e-009
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 252 atgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|||||||||| |||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 495 atgacggtgcaggacatctttgtatgcattcttgctttcatgccaactggctgggg 440
Score = 44.1 bits (22), Expect = 0.007
Identities = 78/98 (79%)
Strand = Plus / Minus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||| ||||| || | || ||||| |||||||||||
Sbjct: 336 ctcctgttcactccagttgcattccttgcctggtttccatttgtgtctgaattccagact 277
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
| |||||||||||||| || || || || ||||||||
Sbjct: 276 cgtatgctgttcaaccaagcatttagtagaggtctgca 239
>gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 3', mRNA sequence
Length = 735
Score = 63.9 bits (32), Expect = 8e-009
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 252 atgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|||||||||| |||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 494 atgacggtgcaggacatctttgtatgcattcttgctttcatgccaactggctgggg 439
Score = 44.1 bits (22), Expect = 0.007
Identities = 78/98 (79%)
Strand = Plus / Minus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||| ||||| || | || ||||| |||||||||||
Sbjct: 335 ctcctgttcactccagttgcattccttgcctggtttccatttgtgtctgaattccagact 276
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
| |||||||||||||| || || || || ||||||||
Sbjct: 275 cgtatgctgttcaaccaagcatttagtagaggtctgca 238
>gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_J09 3', mRNA sequence
Length = 834
Score = 63.9 bits (32), Expect = 8e-009
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 252 atgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|||||||||| |||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 499 atgacggtgcaggacatctttgtatgcattcttgctttcatgccaactggctgggg 444
Score = 44.1 bits (22), Expect = 0.007
Identities = 78/98 (79%)
Strand = Plus / Minus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||| ||||| || | || ||||| |||||||||||
Sbjct: 340 ctcctgttcactccagttgcattccttgcctggtttccatttgtgtctgaattccagact 281
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
| |||||||||||||| || || || || ||||||||
Sbjct: 280 cgtatgctgttcaaccaagcatttagtagaggtctgca 243
>gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_G13 5', mRNA sequence
Length = 686
Score = 60.0 bits (30), Expect = 1e-007
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||||||||| || | || ||||| |||||||||||
Sbjct: 325 ctcctgttcactccagttgcattcctcgcctggttcccttttgtgtctgaattccagact 384
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
| |||||||||||||| || ||||| || ||||||||
Sbjct: 385 cgtatgctgttcaaccaagcattcagtagaggtctgca 422
>gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009C11 5', mRNA sequence
Length = 826
Score = 56.0 bits (28), Expect = 2e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 252 atgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||| |||| |||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 382 atgacagtgcaggacatctttgtatgcattcttgctttcatgccaactggctgggg 437
Score = 40.1 bits (20), Expect = 0.11
Identities = 62/77 (80%)
Strand = Plus / Plus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||| ||||| || | || ||||| |||||||||||
Sbjct: 541 ctcctgttcactccagttgcattccttgcctggtttccatttgtgtctgaattccagact 600
Query: 471 aggatgctgttcaacca 487
| ||||||||||||||
Sbjct: 601 cgtatgctgttcaacca 617
>gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 371
Score = 52.0 bits (26), Expect = 3e-005
Identities = 79/98 (80%)
Strand = Plus / Plus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||||||||| || | || ||||| |||||||||||
Sbjct: 108 ctcctgttcactccagttgcattcctcgcctggttcccttttgtgtctgaattccagact 167
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
|||||||| ||||||| || |||| || ||||||||
Sbjct: 168 cggatgctggtcaaccaagcattcaatagaggtctgca 205
>gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 3', mRNA sequence
Length = 632
Score = 52.0 bits (26), Expect = 3e-005
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||||||||| || | || ||||| || ||||||||
Sbjct: 401 ctcctgttcactccagttgcattcctcgcctggttcccttttgtgtctgagttccagact 342
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
| |||||||||||||| || ||||| || ||||||||
Sbjct: 341 cgtatgctgttcaaccaagcattcagtagaggtctgca 304
>gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 5', mRNA sequence
Length = 599
Score = 52.0 bits (26), Expect = 3e-005
Identities = 79/98 (80%)
Strand = Plus / Plus
Query: 411 ctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagacc 470
||||||||||| || | || ||||||||||| || | || ||||| || ||||||||
Sbjct: 232 ctcctgttcactccagttgcattcctcgcctggttcccttttgtgtctgagttccagact 291
Query: 471 aggatgctgttcaaccaggcgttcagcagnggtctgca 508
| |||||||||||||| || ||||| || ||||||||
Sbjct: 292 cgtatgctgttcaaccaagcattcagtagaggtctgca 329
>gb|CV227499.1|CV227499 WS0167.B21_F18 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_F18
3', mRNA sequence
Length = 340
Score = 50.1 bits (25), Expect = 1e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 453 gtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcagnggtctgca 508
||||| ||||||||||| | |||||||||||||| || ||||| || ||||||||
Sbjct: 340 gtgtctgaattccagactcgtatgctgttcaaccaagcattcagtagaggtctgca 285
>gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 497
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 315 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 361
>gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 694
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 398 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 444
>gb|BU881855.1|BU881855 UM68TD08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 476
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 36 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 82
>gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 279 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 325
>gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P12 3', mRNA sequence
Length = 683
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 437 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 391
>gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_H22 5', mRNA sequence
Length = 481
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 108 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 154
>gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_A18 5', mRNA sequence
Length = 536
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 97 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 143
>gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003A08F1, mRNA sequence
Length = 527
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 290 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 244
>gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_K13 3', mRNA sequence
Length = 735
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 462 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 416
>gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01914_B17 3', mRNA sequence
Length = 679
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 462 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 416
>gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_F22 3', mRNA sequence
Length = 664
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 242 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 288
>gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_H24 3', mRNA sequence
Length = 839
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 463 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 417
>gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_C07 3', mRNA sequence
Length = 826
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 448 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 402
>gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 664
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 288 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 334
>gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_F05 3', mRNA sequence
Length = 884
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtat 520
|||||||||||||| || ||||| | ||||| ||||||||||||||
Sbjct: 465 atgctgttcaaccaagctttcagtcgaggtcttcagatctcccgtat 419
>gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 426
Score = 46.1 bits (23), Expect = 0.002
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 434 cctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgtt 493
||||||||| || | || ||||| || |||||||| | |||||||||||||| || ||
Sbjct: 257 cctcgcctggttcccttttgtgtctgagttccagactcgtatgctgttcaaccaagcatt 316
Query: 494 cagcagnggtctgca 508
||| || ||||||||
Sbjct: 317 cagtagaggtctgca 331
>gb|BU813345.1|BU813345 N009C11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 182
Score = 42.1 bits (21), Expect = 0.028
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
|||||| |||| ||||| |||||||||||||| ||||| |||||
Sbjct: 120 ggacatctttgaatgcattcttgctttcatgccaactggctgggg 164
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 498 gcggccgcccgggcaggtac 479
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtac 289
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 637 gcggccgcccgggcaggtac 656
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 644 gcggccgcccgggcaggtac 625
>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 737
Score = 40.1 bits (20), Expect = 0.11
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 280 tccttgctttcatgcccactggatgggg 307
|||||||||||||||| ||||| |||||
Sbjct: 682 tccttgctttcatgccaactggctgggg 709
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
TIR1 (TIR1) mRNA, complete cds
Length = 2646
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 47 gcggccgcccgggcaggta 65
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,817
Number of Sequences: 369679
Number of extensions: 50817
Number of successful extensions: 12028
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11974
Number of HSP's gapped (non-prelim): 54
length of query: 710
length of database: 203,408,664
effective HSP length: 19
effective length of query: 691
effective length of database: 196,384,763
effective search space: 135701871233
effective search space used: 135701871233
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)