BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.2
(1617 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA927208.1|CA927208 MTU6CR.P6.C08 Aspen root cDNA Librar... 172 3e-041
gb|DT506827.1|DT506827 WS02416.BR_J23 PTxD-ICC-N-A-14 Popul... 165 7e-039
gb|CX173575.1|CX173575 F02_69-47_12.ab1 leaf inoculated wit... 105 5e-021
gb|CX179995.1|CX179995 E03_45-30_09.ab1 leaf inoculated wit... 105 5e-021
gb|CF936952.1|CF936952 PO3012D09 Populus tomentiglandulosa ... 103 2e-020
gb|CX184516.1|CX184516 A02_45-70_02.ab1 leaf inoculated wit... 92 8e-017
gb|CX178726.1|CX178726 F03_45-1_11.ab1 leaf inoculated with... 90 3e-016
gb|CX185263.1|CX185263 C10_45-118_06.ab1 leaf inoculated wi... 90 3e-016
gb|CX186437.1|CX186437 E12_45-118_10.ab1 leaf inoculated wi... 90 3e-016
gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Popu... 80 3e-013
gb|BU824485.1|BU824485 UB64CPG12 Populus tremula cambium cD... 76 5e-012
gb|CN518640.1|CN518640 GQ0103.B3_B21 GQ010 Populus trichoca... 74 2e-011
gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Popu... 70 3e-010
gb|AJ776901.1|AJ776901 AJ776901 Populus euphratica root 3-6... 66 5e-009
gb|CV268173.1|CV268173 WS0204.B21_M02 PTxN-IB-N-A-11 Populu... 66 5e-009
gb|BI139024.1|BI139024 F121P45Y Populus flower cDNA library... 62 7e-008
gb|CK101331.1|CK101331 F040P93.5pR Populus flower cDNA libr... 52 7e-005
gb|CK091033.1|CK091033 F040P93.3pR Populus flower cDNA libr... 46 0.004
gb|CV226456.1|CV226456 WS0164.B21_F04 PT-DX-A-7 Populus tri... 46 0.004
gb|CV231984.1|CV231984 WS0196.B21_C15 PT-DX-N-A-10 Populus ... 46 0.004
gb|CV232634.1|CV232634 WS0198.B21_D10 PT-DX-N-A-10 Populus ... 46 0.004
gb|CV253885.1|CV253885 WS0223.B21_F12 PTxD-ICC-A-12 Populus... 46 0.004
gb|CV255258.1|CV255258 WS02412.B21_I07 PTxD-ICC-N-A-14 Popu... 46 0.004
gb|CV255700.1|CV255700 WS02414.B21_M15 PTxD-ICC-N-A-14 Popu... 46 0.004
gb|CV259425.1|CV259425 WS02011.B21_F06 PTxN-IB-N-A-11 Popul... 46 0.004
gb|CV269981.1|CV269981 WS0209.B21_M05 PTxN-IB-N-A-11 Populu... 46 0.004
gb|CX185133.1|CX185133 H07_45-100_15.ab1 leaf inoculated wi... 46 0.004
gb|DT470401.1|DT470401 WS01920.C21_M05 PT-DX-N-A-10 Populus... 46 0.004
gb|DT490349.1|DT490349 WS02544.B21_L12 PT-MB-N-A-15 Populus... 46 0.004
gb|DT517729.1|DT517729 WS02435.B21_C07 PTxD-ICC-N-A-14 Popu... 46 0.004
gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Popul... 46 0.004
gb|DT524494.1|DT524494 WS02042.C21.1_M22 PTxN-IB-N-A-11 Pop... 46 0.004
gb|DT526538.1|DT526538 WS02048.C21_E23 PTxN-IB-N-A-11 Popul... 46 0.004
gb|BU837523.1|BU837523 T102G07 Populus apical shoot cDNA li... 44 0.017
>gb|CA927208.1|CA927208 MTU6CR.P6.C08 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 684
Score = 172 bits (87), Expect = 3e-041
Identities = 324/403 (80%)
Strand = Plus / Plus
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|||||||| ||||| || ||||| || || ||||| |||||| |||| ||| ||| |||
Sbjct: 254 ggtgcatggcatgtagcttcaattgcatatacagcgtcaaaactgttatcagggaatggc 313
Query: 927 atcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttg 986
|| |||||||| || ||||| |||||||||||||| | || |||||| | || |||
Sbjct: 314 attttcatgaaatcagccttcacaaaatcacatgtcctgtcaactcctgcaatgcgattg 373
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|| ||||||||||| | |||||| || |||||||| ||||| || || ||||| ||||||
Sbjct: 374 agttcctttccccttgatatctgatactcgttgttgttcaaccctgttactgatgttgag 433
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttc 1106
|| |||| ||||||||||| || |||||||| |||||||| || ||||| |||||||||
Sbjct: 434 ctgaatcgcgcaatttctctaagaggtccaccaattccacatcctacatccaaaaccttc 493
Query: 1107 attcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttca 1166
||| ||||||| ||||| |||| |||||||| |||||||||||||||||||| |||
Sbjct: 494 tgtccaggtttcaggccaagctgcaaagcaagaaagtgctcatgtcgcttgatgctctca 553
Query: 1167 cgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactca 1226
|| | || || || || ||||| | ||||| ||||| || || ||||| ||| |||||
Sbjct: 554 cggagagactcccctttgaatctgggtgcaaaatggaaagactccccccagccaaactca 613
Query: 1227 tagaagctagtggcaagatcatagtatttattaaccatatcag 1269
|| || || || |||||||||| |||||||| ||||| ||||
Sbjct: 614 taaaaactggtaacaagatcataatatttatttaccatgtcag 656
>gb|DT506827.1|DT506827 WS02416.BR_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 5', mRNA sequence
Length = 861
Score = 165 bits (83), Expect = 7e-039
Identities = 323/403 (80%)
Strand = Plus / Minus
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|||||||| ||||| || ||||| || || ||||| |||||| |||| ||| ||| |||
Sbjct: 772 ggtgcatggcatgtagcttcaattgcatatacagcgtcaaaactgttatcagggaatggc 713
Query: 927 atcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttg 986
|| |||||||| || ||||| | |||||||||||| | || |||||| | || |||
Sbjct: 712 attttcatgaaatcagccttcaaaaaatcacatgtcctgtcaactcctgcaatgcgattg 653
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|| ||||||||||| | |||||| || |||||||| ||||| || || ||||| ||||||
Sbjct: 652 agttcctttccccttgatatctgatactcgttgttgttcaaccctgttactgatgttgag 593
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttc 1106
|| |||| ||||||||||| || |||||||| |||||||| || ||||| |||||||||
Sbjct: 592 ctgaatcgcgcaatttctctaagaggtccaccaattccacatcctacatccaaaaccttc 533
Query: 1107 attcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttca 1166
||| ||||||| |||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 532 tgtccaggtttcaggccaagttgcaaagcaagaaagtgctcatgtcgcttgatgctctca 473
Query: 1167 cgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactca 1226
|| | || || || || ||||| | ||||| ||||| || || ||||| || |||||
Sbjct: 472 cggagagactcccctttgaatctgggtgcaaaatggaaagactccccccagccgaactca 413
Query: 1227 tagaagctagtggcaagatcatagtatttattaaccatatcag 1269
|| || || || |||||||||| |||||||| ||||| ||||
Sbjct: 412 taaaaactggtaacaagatcataatatttatttaccatgtcag 370
>gb|CX173575.1|CX173575 F02_69-47_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 695
Score = 105 bits (53), Expect = 5e-021
Identities = 230/289 (79%)
Strand = Plus / Minus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 585 tcctttccccttgatatctgatactcattgttgttcaaccctgttactgatgttgagctg 526
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||| ||||||||||| | ||||| || |||||||| || ||||| || |||||| |
Sbjct: 525 aatcgagcaatttctcttaaaggtccgccaattccacatcctacatccaacaccttctgt 466
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
|| ||||||| |||||||| | || ||||| || ||||||||||||||||| || ||
Sbjct: 465 ccaggtttcaggccaagttgtaaagcgagaaagtgttcatgtcgcttgatgctctcgcga 406
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| || || || || |||| ||||||| ||||| || || ||||| ||| |||||||
Sbjct: 405 agagactcccctttgaatctaggagcaaaatggaaagactccccccagccaaactcataa 346
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttgg 1278
||||| || |||||||||| |||||||||||||| |||| |||||||
Sbjct: 345 aagctggtaacaagatcataatatttattaaccatgtcagagtagttgg 297
>gb|CX179995.1|CX179995 E03_45-30_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 622
Score = 105 bits (53), Expect = 5e-021
Identities = 230/289 (79%)
Strand = Plus / Minus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 578 tcctttccccttgatatctgatactcattgttgttcaaccctgttactgatgttgagctg 519
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||| ||||||||||| | ||||| || |||||||| || ||||| || |||||| |
Sbjct: 518 aatcgagcaatttctcttaaaggtccgccaattccacatcctacatccaacaccttctgt 459
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
|| ||||||| |||||||| | || ||||| || ||||||||||||||||| || ||
Sbjct: 458 ccaggtttcaggccaagttgtaaagcgagaaagtgttcatgtcgcttgatgctctcgcga 399
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| || || || || |||| ||||||| ||||| || || ||||| ||| |||||||
Sbjct: 398 agagactcccctttgaatctaggagcaaaatggaaagactccccccagccaaactcataa 339
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttgg 1278
||||| || |||||||||| |||||||||||||| |||| |||||||
Sbjct: 338 aagctggtaacaagatcataatatttattaaccatgtcagagtagttgg 290
>gb|CF936952.1|CF936952 PO3012D09 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1079
Score = 103 bits (52), Expect = 2e-020
Identities = 322/412 (78%)
Strand = Plus / Minus
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|||||||| || || || ||||| || || |||||||||||| |||| ||| ||| |||
Sbjct: 644 ggtgcatggcaggtagcttcaattgcatatacagcatcaaaaatgttatcagggaatggc 585
Query: 927 atcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttg 986
|| |||| ||| || |||| ||||||||||| || || || |||||| | || ||
Sbjct: 584 attttcacgaaatcacccttcacaaaatcacaggtcccgtcaactcctgcaatgcgattt 525
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|| ||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||
Sbjct: 524 agttcctttccccttgatatctgatactcattgttgttcaaccctgttactgatgttgag 465
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttc 1106
|| |||| ||||||||||| | || || || |||||||| || ||||| || ||||||
Sbjct: 464 ctgaatcgagcaatttctcttaaaggcccgccaattccacatcctacatccaacaccttc 405
Query: 1107 attcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttca 1166
||| ||||||| |||||||| | |||||||| || ||||||||||||||||| ||
Sbjct: 404 tgtccaggtttcaggccaagttgtaaagcaagaaagtgttcatgtcgcttgatgctctcg 345
Query: 1167 cgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactca 1226
|| | || || || || |||| ||||| | ||||| || || ||||| ||| |||||
Sbjct: 344 cgaagagactcccctttgaatctaggagcagaatggaaagactccccccagccaaactca 285
Query: 1227 tagaagctagtggcaagatcatagtatttattaaccatatcagtatagttgg 1278
|| ||||| || |||||||||| |||||||||||||| |||| |||||||
Sbjct: 284 taaaagctggtaacaagatcataatatttattaaccatgtcagagtagttgg 233
Score = 46.1 bits (23), Expect = 0.004
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 571 ggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||| ||||| | |||| ||||||||||||||||| ||||
Sbjct: 940 ggaagctactcagtgagaagtgacttgtgtccaagggcaagtaccatggca 890
>gb|CX184516.1|CX184516 A02_45-70_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 746
Score = 91.7 bits (46), Expect = 8e-017
Identities = 228/289 (78%)
Strand = Plus / Minus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
|||||||||||| |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 606 tcctttcccctgnatatctgatactcattgttgttcaaccctgttactgatgttgagctg 547
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||| ||||||||||| | || || || |||||||| || ||||| || |||||| |
Sbjct: 546 aatcgagcaatttctcttaaaggcccgccaattccacatcctacatccaacaccttctgt 487
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
|| ||||||| |||||||| | || ||||| || ||||||||||| ||||| || ||
Sbjct: 486 ccaggtttcaggccaagttgtaaagcgagaaagtgttcatgtcgcttaatgctctcgcga 427
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| || || || || |||| ||||||| ||||| || || ||||| ||| |||||||
Sbjct: 426 agagactcccctttgaatctaggagcaaaatggaaagactccccccagccaaactcataa 367
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttgg 1278
||||| || |||||||||| |||||||||||||| |||| |||||||
Sbjct: 366 aagctggtaacaagatcataatatttattaaccatgtcagagtagttgg 318
>gb|CX178726.1|CX178726 F03_45-1_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 619
Score = 89.7 bits (45), Expect = 3e-016
Identities = 228/289 (78%)
Strand = Plus / Minus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 587 tcctttccccttgatatctgatactcattgttgttcaaccctgttactgatgttgagctg 528
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||| ||||||||||| | || || || |||||||| || ||||| || |||||| |
Sbjct: 527 aatcgagcaatttctcttaaaggcccgccaattccacatcctacatccaacaccttctgt 468
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
|| ||||||| |||||||| | || ||||| || ||||||||||| ||||| || ||
Sbjct: 467 ccaggtttcaggccaagttgtaaagcgagaaagtgttcatgtcgcttaatgctctcgcga 408
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| || || || || |||| ||||||| ||||| || || ||||| ||| |||||||
Sbjct: 407 agagactcccctttgaatctaggagcaaaatggaaagactccccccagccaaactcataa 348
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttgg 1278
||||| || |||||||||| |||||||||||||| |||| |||||||
Sbjct: 347 aagctggtaacaagatcataatatttattaaccatgtcagagtagttgg 299
>gb|CX185263.1|CX185263 C10_45-118_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 660
Score = 89.7 bits (45), Expect = 3e-016
Identities = 228/289 (78%)
Strand = Plus / Minus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 594 tcctttccccttgatatctgatactcattgttgttcaaccctgttactgatgttgagctg 535
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||| ||||||||||| | || || || |||||||| || ||||| || |||||| |
Sbjct: 534 aatcgagcaatttctcttaaaggcccgccaattccacatcctacatccaacaccttctgt 475
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
|| ||||||| |||||||| | || ||||| || ||||||||||| ||||| || ||
Sbjct: 474 ccaggtttcaggccaagttgtaaagcgagaaagtgttcatgtcgcttaatgctctcgcga 415
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| || || || || |||| ||||||| ||||| || || ||||| ||| |||||||
Sbjct: 414 agagactcccctttgaatctaggagcaaaatggaaagactccccccagccaaactcataa 355
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttgg 1278
||||| || |||||||||| |||||||||||||| |||| |||||||
Sbjct: 354 aagctggtaacaagatcataatatttattaaccatgtcagagtagttgg 306
>gb|CX186437.1|CX186437 E12_45-118_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 669
Score = 89.7 bits (45), Expect = 3e-016
Identities = 228/289 (78%)
Strand = Plus / Minus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 594 tcctttccccttgatatctgatactcattgttgttcaaccctgttactgatgttgagctg 535
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||| ||||||||||| | || || || |||||||| || ||||| || |||||| |
Sbjct: 534 aatcgagcaatttctcttaaaggcccgccaattccacatcctacatccaacaccttctgt 475
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
|| ||||||| |||||||| | || ||||| || ||||||||||| ||||| || ||
Sbjct: 474 ccaggtttcaggccaagttgtaaagcgagaaagtgttcatgtcgcttaatgctctcgcga 415
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| || || || || |||| ||||||| ||||| || || ||||| ||| |||||||
Sbjct: 414 agagactcccctttgaatctaggagcaaaatggaaagactccccccagccaaactcataa 355
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttgg 1278
||||| || |||||||||| |||||||||||||| |||| |||||||
Sbjct: 354 aagctggtaacaagatcataatatttattaaccatgtcagagtagttgg 306
>gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 3', mRNA sequence
Length = 910
Score = 79.8 bits (40), Expect = 3e-013
Identities = 160/200 (80%)
Strand = Plus / Plus
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|||||||| ||||| || ||||| || || ||||| |||||| |||| ||| ||| |||
Sbjct: 710 ggtgcatggcatgtagcttcaattgcatatacagcgtcaaaactgttatcagggaatggc 769
Query: 927 atcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttg 986
|| |||||||| || ||||| | |||||||||||| | || |||||| | || |||
Sbjct: 770 attttcatgaaatcagccttcaaaaaatcacatgtcctgtcaactcctgcaatgcgattg 829
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|| ||||||||||| | |||||| || |||||||| ||||| || || ||||| ||||||
Sbjct: 830 agttcctttccccttgatatctgatactcgttgttgttcaaccctgttactgatgttgag 889
Query: 1047 ctaaatcttgcaatttctct 1066
|| |||| |||||||||||
Sbjct: 890 ctgaatcgcgcaatttctct 909
>gb|BU824485.1|BU824485 UB64CPG12 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 438
Score = 75.8 bits (38), Expect = 5e-012
Identities = 158/198 (79%)
Strand = Plus / Minus
Query: 1081 ttccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcagggcaagaa 1140
||||||| || ||||| || |||||| ||| ||||||| |||||||| | |||||||
Sbjct: 438 ttccacatcctacatccaacaccttctgtccaggtttcaggccaagttgtaaagcaagaa 379
Query: 1141 aatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtgagcaaagt 1200
| || ||||||||||||||||| || || | || || || || |||| ||||||| |
Sbjct: 378 agtgttcatgtcgcttgatgctctcgcgaagagactcccctttgaatctaggagcaaaat 319
Query: 1201 ggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtatttattaa 1260
|||| || || ||||| ||| ||||||| ||||| || |||||||||| ||||||||||
Sbjct: 318 ggaaagactccccccagccaaactcataaaagctggtaacaagatcataatatttattaa 259
Query: 1261 ccatatcagtatagttgg 1278
|||| |||| |||||||
Sbjct: 258 ccatgtcagagtagttgg 241
>gb|CN518640.1|CN518640 GQ0103.B3_B21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0103_B21 5', mRNA sequence
Length = 280
Score = 73.8 bits (37), Expect = 2e-011
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 217 tcctttccccttgatatctgatactcattgttgttcaaccctgttactgatgttgagctg 158
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||| ||||||||||| | || || || |||||||| || ||||| || |||||| |
Sbjct: 157 aatcgagcaatttctcttaaaggcccgccaattccacatcctacatccaacaccttctgt 98
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgct 1162
|| ||||||| |||||||| | || ||||| || |||||||||||||||||
Sbjct: 97 ccaggtttcaggccaagttgtaaagcgagaaagtgttcatgtcgcttgatgct 45
>gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_H07 3', mRNA sequence
Length = 900
Score = 69.9 bits (35), Expect = 3e-010
Identities = 149/187 (79%)
Strand = Plus / Plus
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|||||||| ||||| || ||||| || || ||||| |||||| |||| ||| ||| |||
Sbjct: 710 ggtgcatggcatgtagcttcaattgcatatacagcgtcaaaactgttatcagggaatggc 769
Query: 927 atcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttg 986
|| |||||||| || ||||| | |||||||||||| | || |||||| | || |||
Sbjct: 770 attttcatgaaatcagccttcaaaaaatcacatgtcctgtcaactcctgcaatgcgattg 829
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|| ||||||||||| | |||||| || |||||||| ||||| || || ||||| ||||||
Sbjct: 830 agttcctttccccttgatatctgatactcgttgttgttcaaccctgttactgatgttgag 889
Query: 1047 ctaaatc 1053
|| ||||
Sbjct: 890 ctgaatc 896
>gb|AJ776901.1|AJ776901 AJ776901 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400020B02F1, mRNA sequence
Length = 446
Score = 65.9 bits (33), Expect = 5e-009
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 1137 agaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtgagca 1196
||||| || ||||||||||||||||| || || | || || || || ||||| |||||
Sbjct: 407 agaaagtgttcatgtcgcttgatgctctcgcgaagagactcccctttgaatctgggagca 348
Query: 1197 aagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtattta 1256
|| ||||| || || ||||| ||| ||||||| ||||| || |||||||||| ||||||
Sbjct: 347 aaatggaaagactccccccagccaaactcataaaagctggtaacaagatcataatattta 288
Query: 1257 ttaaccatatcag 1269
|||||||| ||||
Sbjct: 287 ttaaccatgtcag 275
>gb|CV268173.1|CV268173 WS0204.B21_M02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0204_M02 3', mRNA sequence
Length = 911
Score = 65.9 bits (33), Expect = 5e-009
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 815 tcctttccccttgatatctgatactcattgttgttcaaccctgttactgatgttgagctg 756
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||| ||||||||||| | || || || |||||||| || ||||| || |||||| |
Sbjct: 755 aatcgagcaatttctcttaaaggcccgccaattccacatcctacatccaacaccttctgt 696
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgct 1162
|| ||||||| |||||||| | || ||||| || ||||||||||| |||||
Sbjct: 695 ccaggtttcaggccaagttgtaaagcgagaaagtgttcatgtcgcttaatgct 643
>gb|BI139024.1|BI139024 F121P45Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 403
Score = 61.9 bits (31), Expect = 7e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 1192 gagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagt 1251
||||||| ||||| || || ||||| ||| ||||||| ||||| || |||||||||| |
Sbjct: 347 gagcaaaatggaaagactccccccagccaaactcataaaagctggtaacaagatcataat 288
Query: 1252 atttattaaccatatcagtatagttgg 1278
||||||||||||| |||| |||||||
Sbjct: 287 atttattaaccatgtcagagtagttgg 261
>gb|CK101331.1|CK101331 F040P93.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F040P93 5', mRNA sequence
Length = 370
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 1212 ccccaaccatactcatagaagctagtggcaagatcatagtatttattaaccatatcag 1269
|||| |||| ||||||| ||||| || |||||||||| |||||||||||||| ||||
Sbjct: 327 cccccaccaaactcataaaagctggtaacaagatcataatatttattaaccatgtcag 270
>gb|CK091033.1|CK091033 F040P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F040P93 3', mRNA sequence
Length = 814
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 441 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 495
>gb|CV226456.1|CV226456 WS0164.B21_F04 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_F04
3', mRNA sequence
Length = 847
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 440 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 494
Score = 40.1 bits (20), Expect = 0.26
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|||||||| || || || ||||| || || ||||||||| || |||| ||| ||| |||
Sbjct: 740 ggtgcatggcaggtagcttcaattgcatatacagcatcataaatgttatcagggaatggc 799
Query: 927 atcttcatgaagtccgccttgacaaaatcaca 958
|| |||||||| || |||| |||||||||||
Sbjct: 800 attttcatgaaatcacccttcacaaaatcaca 831
>gb|CV231984.1|CV231984 WS0196.B21_C15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_C15 3', mRNA sequence
Length = 461
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 389 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 443
>gb|CV232634.1|CV232634 WS0198.B21_D10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0198_D10 3', mRNA sequence
Length = 468
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 412 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 466
>gb|CV253885.1|CV253885 WS0223.B21_F12 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_F12 3', mRNA sequence
Length = 734
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 416 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 470
>gb|CV255258.1|CV255258 WS02412.B21_I07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_I07 3', mRNA sequence
Length = 704
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 412 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 466
>gb|CV255700.1|CV255700 WS02414.B21_M15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_M15 3', mRNA sequence
Length = 698
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 440 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 494
>gb|CV259425.1|CV259425 WS02011.B21_F06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_F06 3', mRNA sequence
Length = 788
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 416 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 470
>gb|CV269981.1|CV269981 WS0209.B21_M05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0209_M05 3', mRNA sequence
Length = 479
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 86 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 32
>gb|CX185133.1|CX185133 H07_45-100_15.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 287 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 233
>gb|DT470401.1|DT470401 WS01920.C21_M05 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_M05 3', mRNA sequence
Length = 567
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 152 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 98
>gb|DT490349.1|DT490349 WS02544.B21_L12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_L12 3', mRNA sequence
Length = 575
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 109 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 55
>gb|DT517729.1|DT517729 WS02435.B21_C07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_C07 3', mRNA sequence
Length = 919
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 412 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 466
Score = 40.1 bits (20), Expect = 0.26
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|||||||| || || || ||||| || || ||||||||| || |||| ||| ||| |||
Sbjct: 712 ggtgcatggcaggtagcttcaattgcatatacagcatcataaatgttatcagggaatggc 771
Query: 927 atcttcatgaagtccgccttgacaaaatcaca 958
|| |||||||| || |||| |||||||||||
Sbjct: 772 attttcatgaaatcacccttcacaaaatcaca 803
>gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_N19 3', mRNA sequence
Length = 973
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 466 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 520
Score = 42.1 bits (21), Expect = 0.066
Identities = 64/77 (83%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 990 tcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagcta 1049
||||||||||| | |||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct: 889 tcctttccccttgatatctgatactcattgttgttcaa-cctgttactgatgttgagctg 947
Query: 1050 aatcttgcaatttctct 1066
|||| |||||||||||
Sbjct: 948 aatcgagcaatttctct 964
Score = 40.1 bits (20), Expect = 0.26
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|||||||| || || || ||||| || || ||||||||| || |||| ||| ||| |||
Sbjct: 766 ggtgcatggcaggtagcttcaattgcatatacagcatcataaatgttatcagggaatggc 825
Query: 927 atcttcatgaagtccgccttgacaaaatcaca 958
|| |||||||| || |||| |||||||||||
Sbjct: 826 attttcatgaaatcacccttcacaaaatcaca 857
>gb|DT524494.1|DT524494 WS02042.C21.1_M22 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_M22 3', mRNA sequence
Length = 493
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 100 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 46
>gb|DT526538.1|DT526538 WS02048.C21_E23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_E23 3', mRNA sequence
Length = 666
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 567 aaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggca 621
||||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||
Sbjct: 469 aaacggaagctactcagtgagaagtgacttgtgtccaaaggcaagtaccatggca 523
>gb|BU837523.1|BU837523 T102G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 439
Score = 44.1 bits (22), Expect = 0.017
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 564 gtcaaacggaagctactcagggagaa 589
|||||||||||||||||||| |||||
Sbjct: 47 gtcaaacggaagctactcagtgagaa 22
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 194,637
Number of Sequences: 369679
Number of extensions: 194637
Number of successful extensions: 56017
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55934
Number of HSP's gapped (non-prelim): 82
length of query: 1617
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1598
effective length of database: 196,384,763
effective search space: 313822851274
effective search space used: 313822851274
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)