BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405110.2.1
(945 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI131293.1|BI131293 G118P52Y Populus cambium cDNA librar... 115 3e-024
gb|BU828257.1|BU828257 K019P45P Populus apical shoot cDNA l... 115 3e-024
gb|BU833848.1|BU833848 T053C12 Populus apical shoot cDNA li... 115 3e-024
gb|BU836981.1|BU836981 T093C08 Populus apical shoot cDNA li... 115 3e-024
gb|BU889012.1|BU889012 P015E10 Populus petioles cDNA librar... 115 3e-024
gb|CF233370.1|CF233370 PtaJXO0022E12E1210 Poplar cDNA libra... 115 3e-024
gb|BU869081.1|BU869081 M125H01 Populus flower cDNA library ... 111 5e-023
gb|CN521138.1|CN521138 GQ0105.B3_M12 GQ010 Populus trichoca... 107 8e-022
gb|CV243803.1|CV243803 WS0252.B21_O07 PT-MB-N-A-15 Populus ... 107 8e-022
gb|CV246999.1|CV246999 WS01116.B21_L03 PT-P-FL-A-2 Populus ... 107 8e-022
gb|CV256550.1|CV256550 WS0244.B21_C17 PTxD-ICC-N-A-14 Popul... 107 8e-022
gb|CX170600.1|CX170600 G11_69-117_13.ab1 leaf inoculated wi... 107 8e-022
gb|DT493863.1|DT493863 WS01116.BR_L03 PT-P-FL-A-2 Populus t... 107 8e-022
gb|DT483978.1|DT483978 WS02524.B21_B18 PT-MB-N-A-15 Populus... 101 5e-020
gb|BU862111.1|BU862111 S011F03 Populus imbibed seed cDNA li... 100 2e-019
gb|BU891700.1|BU891700 P054B02 Populus petioles cDNA librar... 100 2e-019
gb|CX654542.1|CX654542 PO02013C01 Poplar SC cDNA library Po... 88 7e-016
gb|CV242522.1|CV242522 WS02515.B21_E17 PT-MB-N-A-15 Populus... 86 3e-015
gb|DT479610.1|DT479610 WS02526.BR_G10 PT-MB-N-A-15 Populus ... 86 3e-015
gb|DT484781.1|DT484781 WS02526.B21_G10 PT-MB-N-A-15 Populus... 86 3e-015
gb|DV466093.1|DV466093 MTUNUL1.P47.B10 NUL Populus fremonti... 84 1e-014
gb|CN521484.1|CN521484 GQ0113.B3_I02 GQ011 Populus trichoca... 58 6e-007
gb|CV229163.1|CV229163 WS01912.B21_G17 PT-DX-N-A-10 Populus... 54 1e-005
gb|BU871042.1|BU871042 Q026C01 Populus flower cDNA library ... 48 6e-004
gb|BU810100.1|BU810100 UL66D09 Populus leaf cDNA library Po... 46 0.002
gb|BU819904.1|BU819904 UA48BPH11 Populus tremula cambium cD... 46 0.002
gb|BU822226.1|BU822226 UB34DPA10 Populus tremula cambium cD... 46 0.002
gb|BU823825.1|BU823825 UB57BPA04 Populus tremula cambium cD... 46 0.002
gb|CF227880.1|CF227880 PtaXM0005G8G0814 Poplar cDNA library... 46 0.002
gb|CF234630.1|CF234630 PtaJXT0013B9B0903 Poplar cDNA librar... 46 0.002
gb|CF235495.1|CF235495 PtaJXT0023E6E0610 Poplar cDNA librar... 46 0.002
gb|CK097630.1|CK097630 UB57BPA04.3pR Populus active cambium... 46 0.002
gb|CK107420.1|CK107420 UB57BPA04.5pR Populus active cambium... 46 0.002
gb|AJ768269.1|AJ768269 AJ768269 Populus euphratica leaf adu... 46 0.002
gb|AJ769558.1|AJ769558 AJ769558 Populus euphratica leaf 3-6... 46 0.002
gb|CV260027.1|CV260027 WS02012.B21_P05 PTxN-IB-N-A-11 Popul... 46 0.002
gb|CV271173.1|CV271173 WS0153.B21_P19 PTxN-IB-A-6 Populus t... 46 0.002
gb|CV274252.1|CV274252 WS0172.B21_K22 PTxD-NR-A-8 Populus t... 46 0.002
gb|DT509056.1|DT509056 WS02422.BR_L01 PTxD-ICC-N-A-14 Popul... 46 0.002
gb|DT513674.1|DT513674 WS02422.B21_L01 PTxD-ICC-N-A-14 Popu... 46 0.002
gb|DT521119.1|DT521119 WS02033.B21_H04 PTxN-IB-N-A-11 Popul... 46 0.002
gb|DT524587.1|DT524587 WS02043.C21_B01 PTxN-IB-N-A-11 Popul... 46 0.002
gb|AI162807.1|AI162807 A024P43U Hybrid aspen plasmid librar... 42 0.038
gb|AI164512.1|AI164512 A064P53U Hybrid aspen plasmid librar... 42 0.038
gb|BI131444.1|BI131444 G120P94Y Populus cambium cDNA librar... 42 0.038
gb|BI139345.1|BI139345 F129P76Y Populus flower cDNA library... 42 0.038
gb|BU809516.1|BU809516 UL58TG04 Populus leaf cDNA library P... 42 0.038
gb|BU810271.1|BU810271 UL68E02 Populus leaf cDNA library Po... 42 0.038
gb|BU822473.1|BU822473 UB38BPB11 Populus tremula cambium cD... 42 0.038
gb|BU868399.1|BU868399 M115C08 Populus flower cDNA library ... 42 0.038
gb|BU868479.1|BU868479 M116D02 Populus flower cDNA library ... 42 0.038
gb|BU870603.1|BU870603 Q015H02 Populus flower cDNA library ... 42 0.038
gb|BU871575.1|BU871575 Q032A12 Populus flower cDNA library ... 42 0.038
gb|BU873444.1|BU873444 Q055F02 Populus flower cDNA library ... 42 0.038
gb|BU876411.1|BU876411 V020D01 Populus flower cDNA library ... 42 0.038
gb|BU880176.1|BU880176 UM42TD09 Populus flower cDNA library... 42 0.038
gb|BU880847.1|BU880847 UM55TF08 Populus flower cDNA library... 42 0.038
gb|BU881516.1|BU881516 UM63TG06 Populus flower cDNA library... 42 0.038
gb|BU882158.1|BU882158 UM73TD05 Populus flower cDNA library... 42 0.038
gb|BU882447.1|BU882447 UM77TB02 Populus flower cDNA library... 42 0.038
gb|BU882991.1|BU882991 UM84TH09 Populus flower cDNA library... 42 0.038
gb|BU882993.1|BU882993 UM84TH11 Populus flower cDNA library... 42 0.038
gb|BU885467.1|BU885467 R031G01 Populus root cDNA library Po... 42 0.038
gb|BU891204.1|BU891204 P047C05 Populus petioles cDNA librar... 42 0.038
gb|BU892038.1|BU892038 P058E10 Populus petioles cDNA librar... 42 0.038
gb|CA930377.1|CA930377 MTU4CA.P21.H02 Aspen apex cDNA Libra... 42 0.038
gb|CA825476.1|CA825476 R59F07 two-month-old roots from clon... 42 0.038
gb|CF233945.1|CF233945 PtaJXO0029E3E0309 Poplar cDNA librar... 42 0.038
gb|CF237185.1|CF237185 Ptajxtjxt3A9A0901 Poplar cDNA librar... 42 0.038
gb|CK089016.1|CK089016 A084P46.3pR Hybrid aspen plasmid lib... 42 0.038
gb|CK099788.1|CK099788 A084P46.5pR Hybrid aspen plasmid lib... 42 0.038
gb|CK110502.1|CK110502 N067D03 Populus bark cDNA library Po... 42 0.038
gb|CN518163.1|CN518163 GQ0094.B3_G20 GQ009 Populus trichoca... 42 0.038
gb|CN518665.1|CN518665 GQ0102.B3_L08 GQ010 Populus trichoca... 42 0.038
gb|CN519337.1|CN519337 GQ0102.B3_M05 GQ010 Populus trichoca... 42 0.038
gb|CN549774.1|CN549774 GQ0243.B3_J14 GQ024 Populus trichoca... 42 0.038
gb|AJ773398.1|AJ773398 AJ773398 Populus euphratica shoot 3-... 42 0.038
gb|AJ777735.1|AJ777735 AJ777735 Populus euphratica root 3-6... 42 0.038
gb|CV225688.1|CV225688 WS0162.B21_B23 PT-DX-A-7 Populus tri... 42 0.038
gb|CV227392.1|CV227392 WS0167.B21_A22 PT-DX-A-7 Populus tri... 42 0.038
gb|CV229294.1|CV229294 WS01912.B21_N09 PT-DX-N-A-10 Populus... 42 0.038
gb|CV234158.1|CV234158 WS01213.B21_N11 PT-GT-FL-A-3 Populus... 42 0.038
gb|CV234562.1|CV234562 WS01215.B21.1_F16 PT-GT-FL-A-3 Popul... 42 0.038
gb|CV239349.1|CV239349 WS0232.B21_C01 PT-MB-A-13 Populus tr... 42 0.038
gb|CV239726.1|CV239726 WS0233.B21_E16 PT-MB-A-13 Populus tr... 42 0.038
gb|CV249824.1|CV249824 WS01125.B21_G19 PT-P-FL-A-2 Populus ... 42 0.038
gb|CV259256.1|CV259256 WS02010.B21_N18 PTxN-IB-N-A-11 Popul... 42 0.038
gb|CV261406.1|CV261406 WS02016.B21_L02 PTxN-IB-N-A-11 Popul... 42 0.038
gb|CV264420.1|CV264420 WS02024.B21_H17 PTxN-IB-N-A-11 Popul... 42 0.038
gb|CV264849.1|CV264849 WS02025.B21_K13 PTxN-IB-N-A-11 Popul... 42 0.038
gb|CV265255.1|CV265255 WS02026.B21_M03 PTxN-IB-N-A-11 Popul... 42 0.038
gb|CV266040.1|CV266040 WS02028.B21_P06 PTxN-IB-N-A-11 Popul... 42 0.038
gb|CV270094.1|CV270094 WS0151.B21_B04 PTxN-IB-A-6 Populus t... 42 0.038
gb|CV270896.1|CV270896 WS0153.B21_D20 PTxN-IB-A-6 Populus t... 42 0.038
gb|CV270957.1|CV270957 WS0153.B21_G11 PTxN-IB-A-6 Populus t... 42 0.038
gb|CV271084.1|CV271084 WS0153.B21_L23 PTxN-IB-A-6 Populus t... 42 0.038
gb|CV271959.1|CV271959 WS0156.B21.1_D05 PTxN-IB-A-6 Populus... 42 0.038
gb|CV272234.1|CV272234 WS0157.B21_B01 PTxN-IB-A-6 Populus t... 42 0.038
gb|CV272503.1|CV272503 WS0157.B21_N12 PTxN-IB-A-6 Populus t... 42 0.038
gb|CV273880.1|CV273880 WS01712.B21_H20 PTxD-NR-A-8 Populus ... 42 0.038
gb|CV274751.1|CV274751 WS0174.B21.1_E09 PTxD-NR-A-8 Populus... 42 0.038
gb|CV275230.1|CV275230 WS0175.B21_M16 PTxD-NR-A-8 Populus t... 42 0.038
gb|CX169665.1|CX169665 H07_69-98_15.ab1 leaf inoculated wit... 42 0.038
gb|CX172412.1|CX172412 B03_69-76_03.ab1 leaf inoculated wit... 42 0.038
gb|CX174103.1|CX174103 F05_69-77_11.ab1 leaf inoculated wit... 42 0.038
gb|CX174407.1|CX174407 F10_69-9_12.ab1 leaf inoculated with... 42 0.038
gb|CX175246.1|CX175246 C11_69-121_05.ab1 leaf inoculated wi... 42 0.038
gb|CX175294.1|CX175294 H05_69-19_15.ab1 leaf inoculated wit... 42 0.038
gb|CX175832.1|CX175832 A10_69-36_02.ab1 leaf inoculated wit... 42 0.038
gb|CX176192.1|CX176192 C09_69-70_05.ab1 leaf inoculated wit... 42 0.038
gb|CX177108.1|CX177108 H08_69-101_16.ab1 leaf inoculated wi... 42 0.038
gb|DT471439.1|DT471439 WS01213.BR_N11 PT-GT-FL-A-3 Populus ... 42 0.038
gb|DT478892.1|DT478892 WS02524.BR_B18 PT-MB-N-A-15 Populus ... 42 0.038
gb|DT481229.1|DT481229 WS02531.BR_E10 PT-MB-N-A-15 Populus ... 42 0.038
gb|DT486541.1|DT486541 WS02531.B21_E10 PT-MB-N-A-15 Populus... 42 0.038
gb|DT489403.1|DT489403 WS02542.B21_C03 PT-MB-N-A-15 Populus... 42 0.038
gb|DT497077.1|DT497077 WS01125.BR_G19 PT-P-FL-A-2 Populus t... 42 0.038
gb|DT501464.1|DT501464 WS01312.BR_O16 PTxD-IL-FL-A-4 Populu... 42 0.038
gb|DT501876.1|DT501876 WS01314.BR_I19 PTxD-IL-FL-A-4 Populu... 42 0.038
gb|DT502907.1|DT502907 WS0134.BR_L01 PTxD-IL-FL-A-4 Populus... 42 0.038
gb|DT504325.1|DT504325 WS01312.B21_O16 PTxD-IL-FL-A-4 Popul... 42 0.038
gb|DT504743.1|DT504743 WS01314.B21_I19 PTxD-IL-FL-A-4 Popul... 42 0.038
gb|DT517160.1|DT517160 WS02433.B21_H21 PTxD-ICC-N-A-14 Popu... 42 0.038
gb|BU832511.1|BU832511 T034G05 Populus apical shoot cDNA li... 40 0.15
gb|BU835818.1|BU835818 T079A09 Populus apical shoot cDNA li... 40 0.15
gb|DN489785.1|DN489785 T079A09.3pR Populus shoot meristem c... 40 0.15
gb|DN499703.1|DN499703 T079A09.5pR Populus shoot meristem c... 40 0.15
>gb|BI131293.1|BI131293 G118P52Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 480
Score = 115 bits (58), Expect = 3e-024
Identities = 172/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| | |||| ||| |||| |||
Sbjct: 479 tactgttgtgctacaacagcatcttgagggtcatcaggttctggagcagagagcaatgct 420
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 419 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 360
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||||||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 359 tccaagcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 300
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 299 tgcatttttggaggctcaaaggggtatcca 270
>gb|BU828257.1|BU828257 K019P45P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 631
Score = 115 bits (58), Expect = 3e-024
Identities = 172/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| | |||| ||| |||| |||
Sbjct: 565 tactgttgtgctacaacagcatcttgagggtcatcaggttctggagcagagagcaatgct 506
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 505 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 446
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||||||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 445 tccaagcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 386
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 385 tgcatttttggaggctcaaaggggtatcca 356
>gb|BU833848.1|BU833848 T053C12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 695
Score = 115 bits (58), Expect = 3e-024
Identities = 172/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| | |||| ||| |||| |||
Sbjct: 588 tactgttgtgctacaacagcatcttgagggtcatcaggttctggagcagagagcaatgct 529
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 528 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 469
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||||||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 468 tccaagcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 409
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 408 tgcatttttggaggctcaaaggggtatcca 379
>gb|BU836981.1|BU836981 T093C08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 547
Score = 115 bits (58), Expect = 3e-024
Identities = 172/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| | |||| ||| |||| |||
Sbjct: 368 tactgttgtgctacaacagcatcttgagggtcatcaggttctggagcagagagcaatgct 309
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 308 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 249
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||||||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 248 tccaagcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 189
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 188 tgcatttttggaggctcaaaggggtatcca 159
>gb|BU889012.1|BU889012 P015E10 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 625
Score = 115 bits (58), Expect = 3e-024
Identities = 172/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| |||| |||
Sbjct: 586 tactgttgtgctacaacagcatcttgagggtcatcaggttcaggagcagagagcaatgct 527
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 526 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 467
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 466 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 407
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 406 tgcatttttggaggctcaaaggggtatcca 377
>gb|CF233370.1|CF233370 PtaJXO0022E12E1210 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 729
Score = 115 bits (58), Expect = 3e-024
Identities = 172/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| |||| |||
Sbjct: 587 tactgttgtgctacaacagcatcttgagggtcatcaggttcaggagcagagagcaatgct 528
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 527 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 468
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 467 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 408
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 407 tgcatttttggaggctcaaaggggtatcca 378
>gb|BU869081.1|BU869081 M125H01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 631
Score = 111 bits (56), Expect = 5e-023
Identities = 170/208 (81%)
Strand = Plus / Minus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||||
Sbjct: 590 ctgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgcttg 531
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
| ||||| || || ||||| | || || |||||||||||||| || |||| ||||||
Sbjct: 530 gacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatgtc 471
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaactg 648
|| ||| ||||| ||| |||||||||| |||||||||||||| ||||| || |||||
Sbjct: 470 caggcagattgccccactttggctgctaatgttagggtgccagacttttgtcgcaaactg 411
Query: 649 catcttcggaggctcaaagggatatcca 676
||| || |||||||||||||| ||||||
Sbjct: 410 catttttggaggctcaaaggggtatcca 383
>gb|CN521138.1|CN521138 GQ0105.B3_M12 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_M12 5', mRNA sequence
Length = 821
Score = 107 bits (54), Expect = 8e-022
Identities = 171/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 376 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 317
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 316 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 257
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 256 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 197
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 196 tgcatttttggaggctcaaaggggtatcca 167
>gb|CV243803.1|CV243803 WS0252.B21_O07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_O07 3', mRNA sequence
Length = 885
Score = 107 bits (54), Expect = 8e-022
Identities = 171/210 (81%)
Strand = Plus / Plus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 468 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 527
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 528 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 587
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 588 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 647
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 648 tgcatttttggaggctcaaaggggtatcca 677
>gb|CV246999.1|CV246999 WS01116.B21_L03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01116_L03 3', mRNA sequence
Length = 704
Score = 107 bits (54), Expect = 8e-022
Identities = 171/210 (81%)
Strand = Plus / Plus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 468 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 527
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 528 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 587
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 588 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgtcgcaaac 647
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 648 tgcatttttggaggctcaaaggggtatcca 677
>gb|CV256550.1|CV256550 WS0244.B21_C17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_C17 3', mRNA sequence
Length = 883
Score = 107 bits (54), Expect = 8e-022
Identities = 171/210 (81%)
Strand = Plus / Plus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 440 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 499
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 500 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 559
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 560 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgtcgcaaac 619
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 620 tgcatttttggaggctcaaaggggtatcca 649
>gb|CX170600.1|CX170600 G11_69-117_13.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 673
Score = 107 bits (54), Expect = 8e-022
Identities = 171/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 498 tactgttgtgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 439
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 438 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 379
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 378 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 319
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 318 tgcatttttggaggctcaaaggggtatcca 289
>gb|DT493863.1|DT493863 WS01116.BR_L03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01116_L03 5', mRNA sequence
Length = 735
Score = 107 bits (54), Expect = 8e-022
Identities = 171/210 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 589 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 530
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 529 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 470
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 469 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgtcgcaaac 410
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 409 tgcatttttggaggctcaaaggggtatcca 380
>gb|DT483978.1|DT483978 WS02524.B21_B18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_B18 3', mRNA sequence
Length = 779
Score = 101 bits (51), Expect = 5e-020
Identities = 135/163 (82%)
Strand = Plus / Plus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| |||||||| |||||| |||||| ||| |||| |||
Sbjct: 459 tactgttgtgctacaacagcatcttgaggatcgtcaggttcaggagcagagagcaatgct 518
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | ||| || |||||||||||||| || |||| ||||
Sbjct: 519 tggacagaaagaagtgctgtctttagggtgagtgctgggctccactggtccttcaaaatg 578
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgcc 629
|||| ||| ||||| ||| |||||||||| || ||||||||||
Sbjct: 579 tccaggcagattgccccactttggctgctaatattagggtgcc 621
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 644 aactgcatcttcggaggctcaaagggatatcca 676
|||||||| || |||||||||||||| ||||||
Sbjct: 710 aactgcatttttggaggctcaaaggggtatcca 742
>gb|BU862111.1|BU862111 S011F03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 637
Score = 99.6 bits (50), Expect = 2e-019
Identities = 170/210 (80%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 587 tactgttgtgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 528
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || || ||||||||||| || |||| ||||
Sbjct: 527 tggacagaaagaagtgctgtctttagagtgagtgccgggctccactggtccttcaaaatg 468
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| |||||||||||||| ||||| || |||
Sbjct: 467 tccaggcagattgccccactttgactgctaatgttagggtgccagacttttgttgcaaac 408
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 407 tgcatttttggaggctcaaaggggtatcca 378
>gb|BU891700.1|BU891700 P054B02 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 671
Score = 99.6 bits (50), Expect = 2e-019
Identities = 161/198 (81%)
Strand = Plus / Minus
Query: 479 acaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttgaagggaaagg 538
||||||||||| ||||| ||||||||| | |||| ||| |||| ||||| | |||||
Sbjct: 586 acaacagcatcttgagggtcatcaggttctggagcagagagcaatgcttggacagaaaga 527
Query: 539 agagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaatt 598
|| || ||||| | || || |||||||||||||| || |||| |||||||||||| |||
Sbjct: 526 agtgctgtctttagagtgagtgctgggctccactggtccttcaaaatgtccaagcagatt 467
Query: 599 gctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgga 658
|| ||| |||| ||||| |||||||||||||| ||||| || |||| ||| || |||
Sbjct: 466 gccccactttgactgctaatgttagggtgccagacttttgttgcaaactacatttttgga 407
Query: 659 ggctcaaagggatatcca 676
||||||||||| ||||||
Sbjct: 406 ggctcaaaggggtatcca 389
>gb|CX654542.1|CX654542 PO02013C01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02013C01 5', mRNA sequence
Length = 566
Score = 87.7 bits (44), Expect = 7e-016
Identities = 168/210 (80%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| |||||||| |||||| |||| | ||| | | |||
Sbjct: 508 tactgttgtgctacaacagcatcttgaggatcgtcaggttcaggcgcagagantaatgct 449
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | ||| || ||||||||||||| || |||| ||||
Sbjct: 448 tggactgaaagaagtgctgtctttagggtgagccctgggctccactggtccttcaaaatg 389
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaac 646
|||| ||| ||||| ||| |||| ||||| || ||||||||||| ||||| || |||
Sbjct: 388 tccaggcagattgccccactttgnctgctaatattagggtgccagacttttgttgcaaac 329
Query: 647 tgcatcttcggaggctcaaagggatatcca 676
||||| || |||||||||||||| ||||||
Sbjct: 328 tgcatttttggaggctcaaaggggtatcca 299
>gb|CV242522.1|CV242522 WS02515.B21_E17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_E17 3', mRNA sequence
Length = 857
Score = 85.7 bits (43), Expect = 3e-015
Identities = 133/163 (81%)
Strand = Plus / Plus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 464 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 523
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 524 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 583
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgcc 629
|||| ||| ||||| ||| |||| ||||| |||||||||||||
Sbjct: 584 tccaggcagattgccccactttgactgctaatgttagggtgcc 626
>gb|DT479610.1|DT479610 WS02526.BR_G10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02526_G10 5', mRNA sequence
Length = 851
Score = 85.7 bits (43), Expect = 3e-015
Identities = 133/163 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 451 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 392
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 391 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 332
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgcc 629
|||| ||| ||||| ||| |||| ||||| |||||||||||||
Sbjct: 331 tccaggcagattgccccactttgactgctaatgttagggtgcc 289
>gb|DT484781.1|DT484781 WS02526.B21_G10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02526_G10 3', mRNA sequence
Length = 742
Score = 85.7 bits (43), Expect = 3e-015
Identities = 133/163 (81%)
Strand = Plus / Plus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 464 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 523
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 524 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 583
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgcc 629
|||| ||| ||||| ||| |||| ||||| |||||||||||||
Sbjct: 584 tccaggcagattgccccactttgactgctaatgttagggtgcc 626
>gb|DV466093.1|DV466093 MTUNUL1.P47.B10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 826
Score = 83.8 bits (42), Expect = 1e-014
Identities = 132/162 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| || | |||
Sbjct: 627 tactgttgcgctacaacagcatcttgagggtcatcaggttcaggagcagagagtaatgct 568
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatg 586
|| | ||||| || || ||||| | || || |||||||||||||| || |||| ||||
Sbjct: 567 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactggtccttcaaaatg 508
Query: 587 tccaagcaaattgctccattttggctgctgatgttagggtgc 628
|||| ||| ||||| ||| |||| ||||| ||||||||||||
Sbjct: 507 tccaggcagattgccccactttgactgctaatgttagggtgc 466
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 644 aactgcatcttcggaggctcaaagggatatcca 676
|||||||| || |||||||||||||| ||||||
Sbjct: 434 aactgcatttttggaggctcaaaggggtatcca 402
>gb|CN521484.1|CN521484 GQ0113.B3_I02 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0113_I02 5', mRNA sequence
Length = 398
Score = 58.0 bits (29), Expect = 6e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| |||||||| |||||| |||||| ||| |||| |||
Sbjct: 105 tactgttgtgctacaacagcatcttgaggatcgtcaggttcaggagcagagagcaatgct 46
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccac 571
|| | ||||| || || ||||| | ||| || ||||||||||||
Sbjct: 45 tggacagaaagaagtgctgtctttagggtgagtgctgggctccac 1
>gb|CV229163.1|CV229163 WS01912.B21_G17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01912_G17 3', mRNA sequence
Length = 588
Score = 54.0 bits (27), Expect = 1e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 467 tactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagct 526
|||||||| || ||||||||||| ||||| ||||||||| |||||| ||| |||| |||
Sbjct: 469 tactgttgtgctacaacagcatcttgagggtcatcaggttcaggagcagagagcaatgct 528
Query: 527 tgaagggaaaggagagcagtcttcaaggtaagggctgggctccactg 573
|| | ||||| || || ||||| | || || ||||||||||||||
Sbjct: 529 tggacagaaagaagtgctgtctttagagtgagtgctgggctccactg 575
>gb|BU871042.1|BU871042 Q026C01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 631
Score = 48.1 bits (24), Expect = 6e-004
Identities = 62/74 (83%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtccaagcaaattgctccattttggctg 613
|||||||| ||||||||||| ||||| |||||||| | ||||| |||||| ||||
Sbjct: 478 gtaagggcagggctccactgctctttgagaatgtcaagacaaatacttccatt---gctg 422
Query: 614 ctgatgttagggtg 627
||||||||||||||
Sbjct: 421 ctgatgttagggtg 408
>gb|BU810100.1|BU810100 UL66D09 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 443
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 241 gtaagggcagggctccactgctctttgagaatgtc 207
>gb|BU819904.1|BU819904 UA48BPH11 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 563
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 370 gtaagggcagggctccactgctctttgagaatgtc 336
>gb|BU822226.1|BU822226 UB34DPA10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 448
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 371 gtaagggcagggctccactgctctttgagaatgtc 337
>gb|BU823825.1|BU823825 UB57BPA04 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 532
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 458 gtaagggcagggctccactgctctttgagaatgtc 424
>gb|CF227880.1|CF227880 PtaXM0005G8G0814 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 697
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 366 gtaagggcagggctccactgctctttgagaatgtc 332
>gb|CF234630.1|CF234630 PtaJXT0013B9B0903 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 466 gtaagggcagggctccactgctctttgagaatgtc 432
>gb|CF235495.1|CF235495 PtaJXT0023E6E0610 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 402
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 40 gtaagggcagggctccactgctctttgagaatgtc 6
>gb|CK097630.1|CK097630 UB57BPA04.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB57BPA04 3', mRNA sequence
Length = 629
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 343 gtaagggcagggctccactgctctttgagaatgtc 377
>gb|CK107420.1|CK107420 UB57BPA04.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB57BPA04 5', mRNA sequence
Length = 666
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 470 gtaagggcagggctccactgctctttgagaatgtc 436
>gb|AJ768269.1|AJ768269 AJ768269 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100016A01F1, mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 464 gtaagggcagggctccactgctctttgagaatgtc 430
>gb|AJ769558.1|AJ769558 AJ769558 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001000009E05F1, mRNA sequence
Length = 434
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 551 aaggtaagggctgggctccactgatctttca 581
||||||||||| ||||||||||| |||||||
Sbjct: 347 aaggtaagggcagggctccactgctctttca 317
>gb|CV260027.1|CV260027 WS02012.B21_P05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_P05 3', mRNA sequence
Length = 697
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 344 gtaagggcagggctccactgctctttgagaatgtc 378
>gb|CV271173.1|CV271173 WS0153.B21_P19 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_P19 3', mRNA sequence
Length = 864
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 344 gtaagggcagggctccactgctctttgagaatgtc 378
>gb|CV274252.1|CV274252 WS0172.B21_K22 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_K22 3', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 346 gtaagggcagggctccactgctctttgagaatgtc 380
>gb|DT509056.1|DT509056 WS02422.BR_L01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_L01 5', mRNA sequence
Length = 803
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 459 gtaagggcagggctccactgctctttgagaatgtc 425
>gb|DT513674.1|DT513674 WS02422.B21_L01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_L01 3', mRNA sequence
Length = 778
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 345 gtaagggcagggctccactgctctttgagaatgtc 379
>gb|DT521119.1|DT521119 WS02033.B21_H04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_H04 3', mRNA sequence
Length = 705
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 344 gtaagggcagggctccactgctctttgagaatgtc 378
>gb|DT524587.1|DT524587 WS02043.C21_B01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02043_B01 3', mRNA sequence
Length = 809
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 554 gtaagggctgggctccactgatctttcagaatgtc 588
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 361 gtaagggcagggctccactgctctttgagaatgtc 395
>gb|AI162807.1|AI162807 A024P43U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 413
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttca 581
||||||||| ||||||||||| |||||||
Sbjct: 302 ggtaagggcagggctccactgctctttca 274
>gb|AI164512.1|AI164512 A064P53U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 359
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 644 aactgcatcttcggaggctcaaagggatatcca 676
|||||||| || |||||||||||||| ||||||
Sbjct: 350 aactgcatttttggaggctcaaaggggtatcca 318
>gb|BI131444.1|BI131444 G120P94Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 362
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttca 581
||||||||| ||||||||||| |||||||
Sbjct: 234 ggtaagggcagggctccactgctctttca 206
>gb|BI139345.1|BI139345 F129P76Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttca 581
||||||||| ||||||||||| |||||||
Sbjct: 350 ggtaagggcagggctccactgctctttca 322
>gb|BU809516.1|BU809516 UL58TG04 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttca 581
||||||||| ||||||||||| |||||||
Sbjct: 359 ggtaagggcagggctccactgctctttca 331
>gb|BU810271.1|BU810271 UL68E02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 425
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttca 581
||||||||| ||||||||||| |||||||
Sbjct: 355 ggtaagggcagggctccactgctctttca 327
>gb|BU822473.1|BU822473 UB38BPB11 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 331
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttca 581
||||||||| ||||||||||| |||||||
Sbjct: 104 ggtaagggcagggctccactgctctttca 76
>gb|BU868399.1|BU868399 M115C08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 563
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttca 581
||||||||| ||||||||||| |||||||
Sbjct: 385 ggtaagggcagggctccactgctctttca 357
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,341
Number of Sequences: 369679
Number of extensions: 104341
Number of successful extensions: 29489
Number of sequences better than 0.5: 127
Number of HSP's better than 0.5 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29282
Number of HSP's gapped (non-prelim): 184
length of query: 945
length of database: 203,408,664
effective HSP length: 19
effective length of query: 926
effective length of database: 196,384,763
effective search space: 181852290538
effective search space used: 181852290538
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)