BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405087.2.1
(737 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA librar... 54 8e-006
gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA li... 54 8e-006
gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDN... 54 8e-006
gb|BI130313.1|BI130313 G103P72Y Populus cambium cDNA librar... 42 0.029
gb|BU824465.1|BU824465 UB64CPF04 Populus tremula cambium cD... 38 0.46
gb|BU885401.1|BU885401 R030G01 Populus root cDNA library Po... 38 0.46
gb|CX182313.1|CX182313 D02_45-83_08.ab1 leaf inoculated wit... 38 0.46
>gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 425
Score = 54.0 bits (27), Expect = 8e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 323 cccactgattttgatgctttcatctgcaatagtgg 357
|||| |||||||||||||||||| |||||||||||
Sbjct: 7 cccagtgattttgatgctttcatttgcaatagtgg 41
Score = 42.1 bits (21), Expect = 0.029
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 440 tcacatattgagtatcgttggggaggagaaggcctaaggaa 480
||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 109 tcacacattgaatatcgttggggtggagaagggctgaggaa 149
>gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 673
Score = 54.0 bits (27), Expect = 8e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 323 cccactgattttgatgctttcatctgcaatagtgg 357
|||| |||||||||||||||||| |||||||||||
Sbjct: 52 cccagtgattttgatgctttcatttgcaatagtgg 86
Score = 42.1 bits (21), Expect = 0.029
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 440 tcacatattgagtatcgttggggaggagaaggcctaaggaa 480
||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 154 tcacacattgaatatcgttggggtggagaagggctgaggaa 194
>gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G103P72 5', mRNA sequence
Length = 597
Score = 54.0 bits (27), Expect = 8e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 323 cccactgattttgatgctttcatctgcaatagtgg 357
|||| |||||||||||||||||| |||||||||||
Sbjct: 7 cccagtgattttgatgctttcatttgcaatagtgg 41
Score = 42.1 bits (21), Expect = 0.029
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 440 tcacatattgagtatcgttggggaggagaaggcctaaggaa 480
||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 109 tcacacattgaatatcgttggggtggagaagggctgaggaa 149
>gb|BI130313.1|BI130313 G103P72Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 220
Score = 42.1 bits (21), Expect = 0.029
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 440 tcacatattgagtatcgttggggaggagaaggcctaaggaa 480
||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 85 tcacacattgaatatcgttggggtggagaagggctgaggaa 125
>gb|BU824465.1|BU824465 UB64CPF04 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 502
Score = 38.2 bits (19), Expect = 0.46
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 323 cccactgattttgatgctttcatctgcaatagtgg 357
|||| |||| ||||||||||||| ||||||||||
Sbjct: 454 cccagtgatcttgatgctttcatgcgcaatagtgg 488
>gb|BU885401.1|BU885401 R030G01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 589
Score = 38.2 bits (19), Expect = 0.46
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 323 cccactgattttgatgctttcatctgcaatagtgg 357
|||| ||||||||||||||| || ||||| |||||
Sbjct: 414 cccagtgattttgatgcttttatttgcaacagtgg 448
>gb|CX182313.1|CX182313 D02_45-83_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 648
Score = 38.2 bits (19), Expect = 0.46
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 323 cccactgattttgatgctttcatctgcaatagtgg 357
|||| ||||||||||||||| || ||||| |||||
Sbjct: 370 cccagtgattttgatgcttttatttgcaacagtgg 404
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,875
Number of Sequences: 369679
Number of extensions: 104875
Number of successful extensions: 29308
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29294
Number of HSP's gapped (non-prelim): 14
length of query: 737
length of database: 203,408,664
effective HSP length: 19
effective length of query: 718
effective length of database: 196,384,763
effective search space: 141004259834
effective search space used: 141004259834
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)