BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU819462.1|BU819462 UA43BPH06 Populus tremula cambium cD... 90 2e-016
gb|CK096079.1|CK096079 UA43BPH06.3pR Populus dormant cambiu... 90 2e-016
gb|CF232079.1|CF232079 PtaJXO0006C1C0105 Poplar cDNA librar... 88 9e-016
gb|CV254379.1|CV254379 WS0241.B21_B03 PTxD-ICC-N-A-14 Popul... 82 5e-014
gb|CV277459.1|CV277459 WS0143.B21_K09 PTxD-IL-A-5 Populus t... 82 5e-014
gb|CK105902.1|CK105902 UA43BPH06.5pR Populus dormant cambiu... 74 1e-011
gb|CV234148.1|CV234148 WS01213.B21_M23 PT-GT-FL-A-3 Populus... 64 1e-008
gb|DT524020.1|DT524020 WS02041.C21.1_E23 PTxN-IB-N-A-11 Pop... 64 1e-008
gb|DT514749.1|DT514749 WS02425.B21_K20 PTxD-ICC-N-A-14 Popu... 62 5e-008
gb|DT521656.1|DT521656 WS02034.B21_O01 PTxN-IB-N-A-11 Popul... 62 5e-008
gb|DT477045.1|DT477045 WS01231.B21_M11 PT-GT-FL-A-3 Populus... 56 3e-006
gb|CV130438.1|CV130438 B9P01a09 Populus stem seasonal libra... 54 1e-005
gb|CV234277.1|CV234277 WS01214.B21_F10 PT-GT-FL-A-3 Populus... 54 1e-005
gb|CX656536.1|CX656536 PO01001H08 Poplar SC cDNA library Po... 54 1e-005
gb|DT469683.1|DT469683 WS01918.C21_J03 PT-DX-N-A-10 Populus... 54 1e-005
gb|CF231391.1|CF231391 PtaC0020H4H0416 Poplar cDNA library ... 46 0.003
gb|CF232630.1|CF232630 PtaJXO0013G5G0513 Poplar cDNA librar... 46 0.003
gb|CK318323.1|CK318323 B9P08a06 Populus stem seasonal libra... 46 0.003
gb|CV225340.1|CV225340 WS0161.B21_B15 PT-DX-A-7 Populus tri... 46 0.003
gb|CV237527.1|CV237527 WS0123.B21_C08 PT-GT-FL-A-3 Populus ... 46 0.003
gb|CV253076.1|CV253076 PX0019.B21_D13 PT-X-FL-A-1 Populus t... 46 0.003
gb|CV259469.1|CV259469 WS02011.B21_H03 PTxN-IB-N-A-11 Popul... 46 0.003
gb|DT500630.1|DT500630 PX0019.BR.1_D13 PT-X-FL-A-1 Populus ... 46 0.003
gb|DT518027.1|DT518027 WS02435.B21_P21 PTxD-ICC-N-A-14 Popu... 46 0.003
gb|BU835314.1|BU835314 T072D04 Populus apical shoot cDNA li... 44 0.012
gb|CK089670.1|CK089670 C025P47.3pR Populus strain T89 leave... 40 0.18
>gb|BU819462.1|BU819462 UA43BPH06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 561
Score = 89.7 bits (45), Expect = 2e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
||||||||||| |||| ||||||||| |||||||| ||||| || ||||||| |||
Sbjct: 244 ctaacaccatctagcaattcctggttccgagggtcatgtttcagcccctcctgataagtt 185
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
|||| ||| || ||||| ||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 184 tccaaggctttatcatactctttcatgaagaattgaacagcaccttttcttgtataaccc 125
Query: 677 ttagtgaaggtggggtctagttcaagacacttctctgcatc 717
|| | ||| ||||| || ||||||| ||| ||||||||||
Sbjct: 124 tttgagaatgtgggatcaagttcaatgcacatctctgcatc 84
>gb|CK096079.1|CK096079 UA43BPH06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA43BPH06 3', mRNA sequence
Length = 563
Score = 89.7 bits (45), Expect = 2e-016
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
||||||||||| |||| ||||||||| |||||||| ||||| || ||||||| |||
Sbjct: 319 ctaacaccatctagcaattcctggttccgagggtcatgtttcagcccctcctgataagtt 378
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
|||| ||| || ||||| ||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 379 tccaaggctttatcatactctttcatgaagaattgaacagcaccttttcttgtataaccc 438
Query: 677 ttagtgaaggtggggtctagttcaagacacttctctgcatc 717
|| | ||| ||||| || ||||||| ||| ||||||||||
Sbjct: 439 tttgagaatgtgggatcaagttcaatgcacatctctgcatc 479
>gb|CF232079.1|CF232079 PtaJXO0006C1C0105 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 623
Score = 87.7 bits (44), Expect = 9e-016
Identities = 131/160 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
|||||||||| |||| ||||||||| |||||||| ||||| || ||||||| ||||
Sbjct: 522 taacaccatctagcaattcctggttccgagggtcatgtttcagcccctcctgataagttt 463
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctt 677
||| ||| || ||||| ||||||||||||||||||| |||||||| ||||| || || |
Sbjct: 462 ccaaggctttatcatactctttcatgaagaattgaacagcaccttttcttgtataaccct 403
Query: 678 tagtgaaggtggggtctagttcaagacacttctctgcatc 717
| | ||| ||||| || ||||||| ||| ||||||||||
Sbjct: 402 ttgagaatgtgggatcaagttcaatgcacatctctgcatc 363
Score = 60.0 bits (30), Expect = 2e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 860 ttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaac 919
||||||||||| | ||| || || || |||||||||||| |||| ||||||||||| |
Sbjct: 220 ttgcctttctcacgctcttcctcagccaattttggatcaaagtattcttgttgctcaaga 161
Query: 920 tcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctca 979
|| || || ||| |||| |||||||| | || || || |||||||| || ||||||||
Sbjct: 160 tccttctttgctttctccgcctcatttagtttcttcagtgtgtctggattgcgatgctct 101
Query: 980 gttagagccttctggtaggtctcgatggca 1009
|| || ||||||||| | ||||| ||||||
Sbjct: 100 gtaagggccttctggaaagtctcaatggca 71
>gb|CV254379.1|CV254379 WS0241.B21_B03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0241_B03 3', mRNA sequence
Length = 755
Score = 81.8 bits (41), Expect = 5e-014
Identities = 131/161 (81%)
Strand = Plus / Plus
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
||||||||||| | || ||||||||| |||||||| ||||| || ||||||| |||
Sbjct: 411 ctaacaccatctaacaattcctggttccgagggtcatgtttcagaccctcctgataagtt 470
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
|||| ||| || ||||| ||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 471 tccaaggctttatcatactctttcatgaagaattgaacagcaccttttcttgtataaccc 530
Query: 677 ttagtgaaggtggggtctagttcaagacacttctctgcatc 717
|| | ||| ||||| || ||||||| ||| ||||||||||
Sbjct: 531 tttgagaatgtgggatcaagttcaatgcacatctctgcatc 571
>gb|CV277459.1|CV277459 WS0143.B21_K09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0143_K09 3', mRNA sequence
Length = 845
Score = 81.8 bits (41), Expect = 5e-014
Identities = 131/161 (81%)
Strand = Plus / Plus
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
||||||||||| | || ||||||||| |||||||| ||||| || ||||||| |||
Sbjct: 405 ctaacaccatctaacaattcctggttccgagggtcatgtttcagaccctcctgataagtt 464
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
|||| ||| || ||||| ||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 465 tccaaggctttatcatactctttcatgaagaattgaacagcaccttttcttgtataaccc 524
Query: 677 ttagtgaaggtggggtctagttcaagacacttctctgcatc 717
|| | ||| ||||| || ||||||| ||| ||||||||||
Sbjct: 525 tttgagaatgtgggatcaagttcaatgcacatctctgcatc 565
>gb|CK105902.1|CK105902 UA43BPH06.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA43BPH06 5', mRNA sequence
Length = 500
Score = 73.8 bits (37), Expect = 1e-011
Identities = 131/161 (81%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
||||||||||| |||| ||||||||| |||||||| ||||| || ||||||| |||
Sbjct: 228 ctaacaccatctagcaattcctggttccgagggtcatgtttcagcccctcctgataagtt 169
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
|||| ||| || ||||| ||||||||||||||||| | |||||||| ||||| || ||
Sbjct: 168 tccaaggctttatcatactctttcatgaagaattg-acagcaccttttcttgtataaccc 110
Query: 677 ttagtgaaggtggggtctagttcaagacacttctctgcatc 717
|| | ||| ||||| || ||||||| ||| ||||||||||
Sbjct: 109 tttgagaatgtgggatcaagttcaatgcacatctctgcatc 69
>gb|CV234148.1|CV234148 WS01213.B21_M23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_M23 3', mRNA sequence
Length = 736
Score = 63.9 bits (32), Expect = 1e-008
Identities = 167/212 (78%)
Strand = Plus / Plus
Query: 551 cacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctga 610
||||| || |||||||| |||| |||||||| | |||||||| ||||| || |||||
Sbjct: 397 caccttctgacaccatctagcaagtcctggttatgggggtcatgtttcagaccctcctga 456
Query: 611 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtg 670
|| ||||||| || || ||||| |||||||| |||||||||| |||||||| |||||
Sbjct: 457 taagtttccaaagctttatcatactctttcataaagaattgaacagcaccttttcttgta 516
Query: 671 taccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttca 730
|| || || | || || || || ||||||| |||||||||||||| || | || |||
Sbjct: 517 taacccttggaaaaagttggatcaagttcaatgcacttctctgcatccttcaatccctca 576
Query: 731 ggcatggctcctaacttggtgtagcaggcagc 762
|||| ||||||| || |||||||| |||||
Sbjct: 577 ggcagagctcctagtttagtgtagcatgcagc 608
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 161 atctcatctggacgatcccagcatggacaagcttctgaatctt 203
>gb|DT524020.1|DT524020 WS02041.C21.1_E23 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02041_E23 3', mRNA sequence
Length = 607
Score = 63.9 bits (32), Expect = 1e-008
Identities = 167/212 (78%)
Strand = Plus / Minus
Query: 551 cacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctga 610
||||| || |||||||| |||| |||||||| | |||||||| ||||| || |||||
Sbjct: 221 caccttctgacaccatctagcaagtcctggttatgggggtcatgtttcagaccctcctga 162
Query: 611 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtg 670
|| ||||||| || || ||||| |||||||| |||||||||| |||||||| |||||
Sbjct: 161 taagtttccaaagctttatcatactctttcataaagaattgaacagcaccttttcttgta 102
Query: 671 taccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttca 730
|| || || | || || || || ||||||| |||||||||||||| || | || |||
Sbjct: 101 taacccttggaaaaagttggatcaagttcaatgcacttctctgcatccttcaatccctca 42
Query: 731 ggcatggctcctaacttggtgtagcaggcagc 762
|||| ||||||| || |||||||| |||||
Sbjct: 41 ggcagagctcctagtttagtgtagcatgcagc 10
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 457 atctcatctggacgatcccagcatggacaagcttctgaatctt 415
>gb|DT514749.1|DT514749 WS02425.B21_K20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_K20 3', mRNA sequence
Length = 908
Score = 61.9 bits (31), Expect = 5e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
|||||||| |||| |||||||| | |||||||| ||||| || ||||||| ||||||
Sbjct: 425 acaccatctagcaagtcctggttatgggggtcatgtttcagaccctcctgataagtttcc 484
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
| || || ||||| |||||||| |||||||||| |||||||| ||||| || || ||
Sbjct: 485 aaagctttatcatactctttcataaagaattgaacagcaccttttcttgtataacccttt 544
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| || || || || ||||||| |||||||||||||| || | || ||||||| |||
Sbjct: 545 gaaaaagttggatcaagttcaatgcacttctctgcatccttcaatccctcaggcagagct 604
Query: 740 cctaacttggtgtagcaggcagc 762
|||| || |||||||| |||||
Sbjct: 605 cctagtttagtgtagcatgcagc 627
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 180 atctcatctggacgatcccagcatggacaagcttctgaatctt 222
>gb|DT521656.1|DT521656 WS02034.B21_O01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_O01 3', mRNA sequence
Length = 510
Score = 61.9 bits (31), Expect = 5e-008
Identities = 100/123 (81%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
||||||| ||||| ||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 178 atctcatctggacgatcccagcatggacaagcttctgaatcttgctcatcaccatcgggt 237
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
|||||| ||||||||| |||||| | |||||||| ||||| ||| | |||||||||||
Sbjct: 238 tcttcatgtgctcctgagccgccttagggttctcttggaagtcaaccaacacctgtctca 297
Query: 435 tga 437
|||
Sbjct: 298 tga 300
>gb|DT477045.1|DT477045 WS01231.B21_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_M11 3', mRNA sequence
Length = 831
Score = 56.0 bits (28), Expect = 3e-006
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 551 cacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctga 610
||||| || |||||||| |||| |||||||| | |||||||| |||| || |||||
Sbjct: 396 caccttctgacaccatctagcaagtcctggttatgggggtcatgtttcaaaccctcctga 455
Query: 611 taggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtg 670
|| ||||||| || || ||||| |||||||| |||||||||| |||||||| |||||
Sbjct: 456 taagtttccaaagctttatcatactctttcataaagaattgaacagcaccttttcttgta 515
Query: 671 taccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttca 730
|| || || | || || || || ||||||| |||||||||||||| || | || |||
Sbjct: 516 taacccttggaaaaagttggatcaagttcaatgcacttctctgcatccttcaatccctca 575
Query: 731 ggcatggctcctaacttggtgtagcaggcagc 762
|||| ||||||| || |||||||| |||||
Sbjct: 576 ggcagagctcctagtttagtgtagcatgcagc 607
Score = 52.0 bits (26), Expect = 5e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 830 tctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctgctaat 889
||||| || ||||||| |||||| | || ||||||||||| | ||| || || || |||
Sbjct: 675 tctggatacttttgctgcttgaaatattcattgcctttctcacgctcttcctcagccaat 734
Query: 890 tttggatcatagtactcttgttgctc 915
||||||||| |||| |||||||||||
Sbjct: 735 tttggatcaaagtattcttgttgctc 760
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 160 atctcatctggacgatcccagcatggacaagcttctgaatctt 202
>gb|CV130438.1|CV130438 B9P01a09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 622
Score = 54.0 bits (27), Expect = 1e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
||||||| ||||| ||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 609 atctcatctggacgatcccagcatggacaagcttctgaatcttgctcatcaccatcgggt 550
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
|||||| ||| ||||| |||||| | |||||||| ||||| ||| | |||||||||||
Sbjct: 549 tcttcatgtgttcctgagccgccttagggttctcttggaagtcaaccaacacctgtctca 490
Query: 435 tga 437
|||
Sbjct: 489 tga 487
>gb|CV234277.1|CV234277 WS01214.B21_F10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_F10 3', mRNA sequence
Length = 711
Score = 54.0 bits (27), Expect = 1e-005
Identities = 159/203 (78%)
Strand = Plus / Plus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
|||||||| |||| |||||||| | |||||||| |||| || ||||||| ||||||
Sbjct: 491 acaccatctagcaagtcctggttatgggggtcatgtttcaaaccctcctgataagtttcc 550
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
| || || ||||| |||||||| |||||||||| |||||||| ||||| || || ||
Sbjct: 551 aaagctttatcatactctttcataaagaattgaacagcaccttttcttgtataacccttg 610
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| || || || || ||||||| |||||||||||||| || | || ||||||| |||
Sbjct: 611 gaaaaagttggatcaagttcaatgcacttctctgcatccttcaatccctcaggcagagct 670
Query: 740 cctaacttggtgtagcaggcagc 762
|||| || |||||||| |||||
Sbjct: 671 cctagtttagtgtagcatgcagc 693
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 162 atctcatctggacgatcccagcatggacaagcttctgaatctt 204
>gb|CX656536.1|CX656536 PO01001H08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01001H08 5', mRNA sequence
Length = 684
Score = 54.0 bits (27), Expect = 1e-005
Identities = 159/203 (78%)
Strand = Plus / Minus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
|||||||| |||| |||||||| | ||||| || ||||| || ||||||| ||||||
Sbjct: 658 acaccatctagcaagtcctggttatgggggtcgtgtttcagaccctcctgataagtttcc 599
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
| || || ||||| |||||||| |||||||||| | |||||| ||||| || || ||
Sbjct: 598 aaagctttatcatactctttcataaagaattgaacagaaccttttcttgtataacccttt 539
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| || || || || ||||||| |||||||||||||| || || || ||||||| |||
Sbjct: 538 gaaaaagttggatcaagttcaatgcacttctctgcatccttcagtccctcaggcagagct 479
Query: 740 cctaacttggtgtagcaggcagc 762
|||| || |||||||| |||||
Sbjct: 478 cctagtttagtgtagcatgcagc 456
Score = 44.1 bits (22), Expect = 0.012
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 830 tctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctgctaat 889
||||| || ||||||| |||||| | || ||||||||||| | ||| || || || |||
Sbjct: 388 tctggatacttttgctgcttgaaatattcattgcctttctcacgctcttcctcggccaat 329
Query: 890 tttggatcatagtactcttgttgctc 915
|||||||| |||| |||||||||||
Sbjct: 328 gttggatcaaagtattcttgttgctc 303
>gb|DT469683.1|DT469683 WS01918.C21_J03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_J03 3', mRNA sequence
Length = 423
Score = 54.0 bits (27), Expect = 1e-005
Identities = 99/123 (80%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
||||||| ||||| ||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 150 atctcatctggacgatcccagcatggacaagcttctgaatcttgctcatcaccatcgggt 209
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
|||||| ||| ||||| |||||| | |||||||| ||||| ||| | |||||||||||
Sbjct: 210 tcttcatgtgttcctgagccgccttagggttctcttggaagtcaaccaacacctgtctca 269
Query: 435 tga 437
|||
Sbjct: 270 tga 272
>gb|CF231391.1|CF231391 PtaC0020H4H0416 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 520
Score = 46.1 bits (23), Expect = 0.003
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
||||||| ||||| ||||||||| ||||||||||||||||| ||| || || |
Sbjct: 364 atctcatctggacgatcccagcatggacaagcttctgaatcttgctcatcaccatcggat 305
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
|||||| ||| ||||| |||||| | |||||||| ||||| ||| | |||||||||||
Sbjct: 304 tcttcatgtgttcctgagccgccttagggttctcttggaagtcaaccaacacctgtctca 245
Query: 435 tga 437
|||
Sbjct: 244 tga 242
>gb|CF232630.1|CF232630 PtaJXO0013G5G0513 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 696
Score = 46.1 bits (23), Expect = 0.003
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 887 aattttggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattc 946
|||||||||||| |||| ||||||||||| | || || || ||| |||| ||||| ||
Sbjct: 445 aattttggatcaaagtattcttgttgctcaagatccttctttgctttctccgcctcgttt 386
Query: 947 aactttttaagagtgtctgggttccgatgctcagttagagccttctggtaggtctcgatg 1006
| || || || |||||||| || |||||||| || || ||||||||| | ||||| |||
Sbjct: 385 agtttcttcagtgtgtctggattgcgatgctctgtaagggccttctggaaagtctcaatg 326
Query: 1007 gca 1009
|||
Sbjct: 325 gca 323
>gb|CK318323.1|CK318323 B9P08a06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 398 atctcatctggacgatcccagcatggacaagcttctgaatctt 356
>gb|CV225340.1|CV225340 WS0161.B21_B15 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_B15
3', mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 165 atctcatctggacgatcccagcatggacaagcttctgaatctt 207
>gb|CV237527.1|CV237527 WS0123.B21_C08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0123_C08 3', mRNA sequence
Length = 232
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 163 atctcatctggacgatcccagcatggacaagcttctgaatctt 205
>gb|CV253076.1|CV253076 PX0019.B21_D13 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_D13 3', mRNA sequence
Length = 518
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 161 atctcatctggacgatcccagcatggacaagcttctgaatctt 203
>gb|CV259469.1|CV259469 WS02011.B21_H03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_H03 3', mRNA sequence
Length = 299
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 180 atctcatctggacaatcccagcatggacaagcttctgaatctt 222
>gb|DT500630.1|DT500630 PX0019.BR.1_D13 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_D13 5', mRNA sequence
Length = 472
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 357 atctcatctggacgatcccagcatggacaagcttctgaatctt 315
>gb|DT518027.1|DT518027 WS02435.B21_P21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_P21 3', mRNA sequence
Length = 484
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatctt 357
||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 184 atctcatctggacgatcccagcatggacaagcttctgaatctt 226
>gb|BU835314.1|BU835314 T072D04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 608
Score = 44.1 bits (22), Expect = 0.012
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 830 tctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctgctaat 889
||||| || ||||||| |||||| | || ||||||||||| | ||| || || || |||
Sbjct: 457 tctggatacttttgctgcttgaaatattcattgcctttctcacgctcttcctcggccaat 398
Query: 890 tttggatcatagtactcttgttgctc 915
|||||||| |||| |||||||||||
Sbjct: 397 gttggatcaaagtattcttgttgctc 372
Score = 40.1 bits (20), Expect = 0.18
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 695 agttcaagacacttctctgcatctttaagaccttcaggcatggctcctaacttggtgtag 754
||||||| |||||||||||||| || || || ||||||| ||||||| || ||||||
Sbjct: 592 agttcaatgcacttctctgcatccttcagtccctcaggcagagctcctagtttagtgtag 533
Query: 755 caggcagc 762
|| |||||
Sbjct: 532 catgcagc 525
>gb|CK089670.1|CK089670 C025P47.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C025P47 3', mRNA sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 712 tgcatctttaagaccttcag 731
||||||||||||||||||||
Sbjct: 537 tgcatctttaagaccttcag 556
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,403
Number of Sequences: 369679
Number of extensions: 157403
Number of successful extensions: 46597
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46524
Number of HSP's gapped (non-prelim): 65
length of query: 1151
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1132
effective length of database: 196,384,763
effective search space: 222307551716
effective search space used: 222307551716
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)