BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV254379.1|CV254379 WS0241.B21_B03 PTxD-ICC-N-A-14 Popul... 68 7e-010
gb|CV277459.1|CV277459 WS0143.B21_K09 PTxD-IL-A-5 Populus t... 68 7e-010
gb|BU819462.1|BU819462 UA43BPH06 Populus tremula cambium cD... 64 1e-008
gb|CF232079.1|CF232079 PtaJXO0006C1C0105 Poplar cDNA librar... 64 1e-008
gb|CK096079.1|CK096079 UA43BPH06.3pR Populus dormant cambiu... 64 1e-008
gb|DT521656.1|DT521656 WS02034.B21_O01 PTxN-IB-N-A-11 Popul... 56 2e-006
gb|DT477045.1|DT477045 WS01231.B21_M11 PT-GT-FL-A-3 Populus... 54 1e-005
gb|CF232630.1|CF232630 PtaJXO0013G5G0513 Poplar cDNA librar... 48 6e-004
gb|CK105902.1|CK105902 UA43BPH06.5pR Populus dormant cambiu... 48 6e-004
gb|CV130438.1|CV130438 B9P01a09 Populus stem seasonal libra... 48 6e-004
gb|DT469683.1|DT469683 WS01918.C21_J03 PT-DX-N-A-10 Populus... 48 6e-004
gb|BU835314.1|BU835314 T072D04 Populus apical shoot cDNA li... 46 0.002
gb|CF231391.1|CF231391 PtaC0020H4H0416 Poplar cDNA library ... 46 0.002
gb|CK318323.1|CK318323 B9P08a06 Populus stem seasonal libra... 46 0.002
gb|CV225340.1|CV225340 WS0161.B21_B15 PT-DX-A-7 Populus tri... 46 0.002
gb|CV234148.1|CV234148 WS01213.B21_M23 PT-GT-FL-A-3 Populus... 46 0.002
gb|CV234277.1|CV234277 WS01214.B21_F10 PT-GT-FL-A-3 Populus... 46 0.002
gb|CV237527.1|CV237527 WS0123.B21_C08 PT-GT-FL-A-3 Populus ... 46 0.002
gb|CV253076.1|CV253076 PX0019.B21_D13 PT-X-FL-A-1 Populus t... 46 0.002
gb|CV259469.1|CV259469 WS02011.B21_H03 PTxN-IB-N-A-11 Popul... 46 0.002
gb|CX656536.1|CX656536 PO01001H08 Poplar SC cDNA library Po... 46 0.002
gb|DT500630.1|DT500630 PX0019.BR.1_D13 PT-X-FL-A-1 Populus ... 46 0.002
gb|DT514749.1|DT514749 WS02425.B21_K20 PTxD-ICC-N-A-14 Popu... 46 0.002
gb|DT518027.1|DT518027 WS02435.B21_P21 PTxD-ICC-N-A-14 Popu... 46 0.002
gb|DT524020.1|DT524020 WS02041.C21.1_E23 PTxN-IB-N-A-11 Pop... 46 0.002
gb|BU819735.1|BU819735 UA46BPH04 Populus tremula cambium cD... 40 0.15
gb|BU861822.1|BU861822 S007C02 Populus imbibed seed cDNA li... 40 0.15
gb|BU884122.1|BU884122 R006B10 Populus root cDNA library Po... 40 0.15
gb|DN498216.1|DN498216 S007C02.5pR Populus imbibed seed cDN... 40 0.15
>gb|CV254379.1|CV254379 WS0241.B21_B03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0241_B03 3', mRNA sequence
Length = 755
Score = 67.9 bits (34), Expect = 7e-010
Identities = 139/174 (79%)
Strand = Plus / Plus
Query: 413 tggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcg 472
||||||| |||| |||||| ||||| || |||||||||| | || ||||||||| |
Sbjct: 382 tggccttattgagctgttccacacatcttctaacaccatctaacaattcctggttccgag 441
Query: 473 ggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatgaaga 532
||||||| |||| || |||| || ||||||| ||| || ||||| |||||||||||||
Sbjct: 442 ggtcatgtttcagaccctcctgataagtttccaaggctttatcatactctttcatgaaga 501
Query: 533 actgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaa 586
| |||| |||||||| || ||||| || || | ||| ||||| ||||||||||
Sbjct: 502 attgaacagcaccttttcttgtataaccctttgagaatgtgggatcaagttcaa 555
>gb|CV277459.1|CV277459 WS0143.B21_K09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0143_K09 3', mRNA sequence
Length = 845
Score = 67.9 bits (34), Expect = 7e-010
Identities = 139/174 (79%)
Strand = Plus / Plus
Query: 413 tggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcg 472
||||||| |||| |||||| ||||| || |||||||||| | || ||||||||| |
Sbjct: 376 tggccttattgagctgttccacacatcttctaacaccatctaacaattcctggttccgag 435
Query: 473 ggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatgaaga 532
||||||| |||| || |||| || ||||||| ||| || ||||| |||||||||||||
Sbjct: 436 ggtcatgtttcagaccctcctgataagtttccaaggctttatcatactctttcatgaaga 495
Query: 533 actgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaa 586
| |||| |||||||| || ||||| || || | ||| ||||| ||||||||||
Sbjct: 496 attgaacagcaccttttcttgtataaccctttgagaatgtgggatcaagttcaa 549
>gb|BU819462.1|BU819462 UA43BPH06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 561
Score = 63.9 bits (32), Expect = 1e-008
Identities = 116/144 (80%)
Strand = Plus / Minus
Query: 443 taacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggttt 502
|||||||||| |||| ||||||||| |||||||| |||| || |||| || ||||
Sbjct: 243 taacaccatctagcaattcctggttccgagggtcatgtttcagcccctcctgataagttt 184
Query: 503 ccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctt 562
||| ||| || ||||| |||||||||||||| |||| |||||||| || ||||| || |
Sbjct: 183 ccaaggctttatcatactctttcatgaagaattgaacagcaccttttcttgtataaccct 124
Query: 563 tggtgaaggtggggtcaagttcaa 586
| | ||| ||||| ||||||||||
Sbjct: 123 ttgagaatgtgggatcaagttcaa 100
>gb|CF232079.1|CF232079 PtaJXO0006C1C0105 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 623
Score = 63.9 bits (32), Expect = 1e-008
Identities = 116/144 (80%)
Strand = Plus / Minus
Query: 443 taacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggttt 502
|||||||||| |||| ||||||||| |||||||| |||| || |||| || ||||
Sbjct: 522 taacaccatctagcaattcctggttccgagggtcatgtttcagcccctcctgataagttt 463
Query: 503 ccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctt 562
||| ||| || ||||| |||||||||||||| |||| |||||||| || ||||| || |
Sbjct: 462 ccaaggctttatcatactctttcatgaagaattgaacagcaccttttcttgtataaccct 403
Query: 563 tggtgaaggtggggtcaagttcaa 586
| | ||| ||||| ||||||||||
Sbjct: 402 ttgagaatgtgggatcaagttcaa 379
Score = 58.0 bits (29), Expect = 6e-007
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 745 ttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaac 804
||||||||||| | ||| || || ||||||||||||||| | | ||||||||||| |
Sbjct: 220 ttgcctttctcacgctcttcctcagccaattttggatcaaagtattcttgttgctcaaga 161
Query: 805 tctttctttgctttctcagcctcantta 832
|| |||||||||||||| |||||| |||
Sbjct: 160 tccttctttgctttctccgcctcattta 133
>gb|CK096079.1|CK096079 UA43BPH06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA43BPH06 3', mRNA sequence
Length = 563
Score = 63.9 bits (32), Expect = 1e-008
Identities = 116/144 (80%)
Strand = Plus / Plus
Query: 443 taacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggttt 502
|||||||||| |||| ||||||||| |||||||| |||| || |||| || ||||
Sbjct: 320 taacaccatctagcaattcctggttccgagggtcatgtttcagcccctcctgataagttt 379
Query: 503 ccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctt 562
||| ||| || ||||| |||||||||||||| |||| |||||||| || ||||| || |
Sbjct: 380 ccaaggctttatcatactctttcatgaagaattgaacagcaccttttcttgtataaccct 439
Query: 563 tggtgaaggtggggtcaagttcaa 586
| | ||| ||||| ||||||||||
Sbjct: 440 ttgagaatgtgggatcaagttcaa 463
>gb|DT521656.1|DT521656 WS02034.B21_O01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_O01 3', mRNA sequence
Length = 510
Score = 56.0 bits (28), Expect = 2e-006
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
|||||||||| || ||||||||| ||||||||||||||||| ||| ||| ||||
Sbjct: 178 atctcatctggacgatcccagcatggacaagcttctgaatcttgctcatcaccatcgggt 237
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaa 299
|||||| ||||||||| ||||| | |||||||| |||||
Sbjct: 238 tcttcatgtgctcctgagccgccttagggttctcttggaa 277
>gb|DT477045.1|DT477045 WS01231.B21_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_M11 3', mRNA sequence
Length = 831
Score = 54.0 bits (27), Expect = 1e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 715 tctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaat 774
||||| || ||||||| |||||| | || ||||||||||| | ||| || || ||||||
Sbjct: 675 tctggatacttttgctgcttgaaatattcattgcctttctcacgctcttcctcagccaat 734
Query: 775 tttggatcataaaactcttgttgctctaactctttctttgctttctc 821
||||||||| | | ||||||||||| | || ||||||||||||||
Sbjct: 735 tttggatcaaagtattcttgttgctcaagatccttctttgctttctc 781
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 160 atctcatctggacgatcccagcatggacaagcttctgaatctt 202
>gb|CF232630.1|CF232630 PtaJXO0013G5G0513 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 696
Score = 48.1 bits (24), Expect = 6e-004
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||| | ||| || || ||||||||||||||| | | ||||||||||| | ||
Sbjct: 469 cctttctcacgctcttcctcagccaattttggatcaaagtattcttgttgctcaagatcc 410
Query: 808 ttctttgctttctcagcctc 827
|||||||||||||| |||||
Sbjct: 409 ttctttgctttctccgcctc 390
>gb|CK105902.1|CK105902 UA43BPH06.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA43BPH06 5', mRNA sequence
Length = 500
Score = 48.1 bits (24), Expect = 6e-004
Identities = 115/144 (79%), Gaps = 1/144 (0%)
Strand = Plus / Minus
Query: 443 taacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggttt 502
|||||||||| |||| ||||||||| |||||||| |||| || |||| || ||||
Sbjct: 227 taacaccatctagcaattcctggttccgagggtcatgtttcagcccctcctgataagttt 168
Query: 503 ccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctt 562
||| ||| || ||||| |||||||||||||| || | |||||||| || ||||| || |
Sbjct: 167 ccaaggctttatcatactctttcatgaagaattg-acagcaccttttcttgtataaccct 109
Query: 563 tggtgaaggtggggtcaagttcaa 586
| | ||| ||||| ||||||||||
Sbjct: 108 ttgagaatgtgggatcaagttcaa 85
>gb|CV130438.1|CV130438 B9P01a09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 622
Score = 48.1 bits (24), Expect = 6e-004
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
|||||||||| || ||||||||| ||||||||||||||||| ||| ||| ||||
Sbjct: 609 atctcatctggacgatcccagcatggacaagcttctgaatcttgctcatcaccatcgggt 550
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaa 299
|||||| ||| ||||| ||||| | |||||||| |||||
Sbjct: 549 tcttcatgtgttcctgagccgccttagggttctcttggaa 510
>gb|DT469683.1|DT469683 WS01918.C21_J03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_J03 3', mRNA sequence
Length = 423
Score = 48.1 bits (24), Expect = 6e-004
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggt 259
|||||||||| || ||||||||| ||||||||||||||||| ||| ||| ||||
Sbjct: 150 atctcatctggacgatcccagcatggacaagcttctgaatcttgctcatcaccatcgggt 209
Query: 260 tcttcaggtgctcctgggccgcacttgggttctcctggaa 299
|||||| ||| ||||| ||||| | |||||||| |||||
Sbjct: 210 tcttcatgtgttcctgagccgccttagggttctcttggaa 249
>gb|BU835314.1|BU835314 T072D04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 608
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 715 tctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaat 774
||||| || ||||||| |||||| | || ||||||||||| | ||| || || ||||||
Sbjct: 457 tctggatacttttgctgcttgaaatattcattgcctttctcacgctcttcctcggccaat 398
Query: 775 tttggatcataaaactcttgttgctctaactctttctttgctttctc 821
|||||||| | | ||||||||||| | || ||||||||||||||
Sbjct: 397 gttggatcaaagtattcttgttgctcaagatccttctttgctttctc 351
>gb|CF231391.1|CF231391 PtaC0020H4H0416 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 520
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 364 atctcatctggacgatcccagcatggacaagcttctgaatctt 322
>gb|CK318323.1|CK318323 B9P08a06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 398 atctcatctggacgatcccagcatggacaagcttctgaatctt 356
>gb|CV225340.1|CV225340 WS0161.B21_B15 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_B15
3', mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 165 atctcatctggacgatcccagcatggacaagcttctgaatctt 207
>gb|CV234148.1|CV234148 WS01213.B21_M23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_M23 3', mRNA sequence
Length = 736
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 161 atctcatctggacgatcccagcatggacaagcttctgaatctt 203
>gb|CV234277.1|CV234277 WS01214.B21_F10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_F10 3', mRNA sequence
Length = 711
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 162 atctcatctggacgatcccagcatggacaagcttctgaatctt 204
>gb|CV237527.1|CV237527 WS0123.B21_C08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0123_C08 3', mRNA sequence
Length = 232
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 163 atctcatctggacgatcccagcatggacaagcttctgaatctt 205
>gb|CV253076.1|CV253076 PX0019.B21_D13 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_D13 3', mRNA sequence
Length = 518
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 161 atctcatctggacgatcccagcatggacaagcttctgaatctt 203
>gb|CV259469.1|CV259469 WS02011.B21_H03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_H03 3', mRNA sequence
Length = 299
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 180 atctcatctggacaatcccagcatggacaagcttctgaatctt 222
>gb|CX656536.1|CX656536 PO01001H08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01001H08 5', mRNA sequence
Length = 684
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 715 tctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaat 774
||||| || ||||||| |||||| | || ||||||||||| | ||| || || ||||||
Sbjct: 388 tctggatacttttgctgcttgaaatattcattgcctttctcacgctcttcctcggccaat 329
Query: 775 tttggatcataaaactcttgttgctctaactctttctttgctttctc 821
|||||||| | | ||||||||||| | || ||||||||||||||
Sbjct: 328 gttggatcaaagtattcttgttgctcaagatccttctttgctttctc 282
>gb|DT500630.1|DT500630 PX0019.BR.1_D13 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_D13 5', mRNA sequence
Length = 472
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 357 atctcatctggacgatcccagcatggacaagcttctgaatctt 315
>gb|DT514749.1|DT514749 WS02425.B21_K20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_K20 3', mRNA sequence
Length = 908
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 180 atctcatctggacgatcccagcatggacaagcttctgaatctt 222
>gb|DT518027.1|DT518027 WS02435.B21_P21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_P21 3', mRNA sequence
Length = 484
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 184 atctcatctggacgatcccagcatggacaagcttctgaatctt 226
>gb|DT524020.1|DT524020 WS02041.C21.1_E23 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02041_E23 3', mRNA sequence
Length = 607
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 200 atctcatctgaactatcccagcacttacaagcttctgaatctt 242
|||||||||| || ||||||||| |||||||||||||||||
Sbjct: 457 atctcatctggacgatcccagcatggacaagcttctgaatctt 415
>gb|BU819735.1|BU819735 UA46BPH04 Populus tremula cambium cDNA library Populus tremula
cDNA 5 prime, mRNA sequence
Length = 484
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aaacatgaattatccaatgt 64
||||||||||||||||||||
Sbjct: 35 aaacatgaattatccaatgt 54
>gb|BU861822.1|BU861822 S007C02 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aaacatgaattatccaatgt 64
||||||||||||||||||||
Sbjct: 73 aaacatgaattatccaatgt 92
>gb|BU884122.1|BU884122 R006B10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aaacatgaattatccaatgt 64
||||||||||||||||||||
Sbjct: 193 aaacatgaattatccaatgt 212
>gb|DN498216.1|DN498216 S007C02.5pR Populus imbibed seed cDNA library Populus tremula
cDNA clone S007C02 5', mRNA sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aaacatgaattatccaatgt 64
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Sbjct: 66 aaacatgaattatccaatgt 85
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,861
Number of Sequences: 369679
Number of extensions: 122861
Number of successful extensions: 38686
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38642
Number of HSP's gapped (non-prelim): 43
length of query: 932
length of database: 203,408,664
effective HSP length: 19
effective length of query: 913
effective length of database: 196,384,763
effective search space: 179299288619
effective search space used: 179299288619
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)