BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA librar... 121 4e-026
gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA librar... 121 4e-026
gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Po... 107 7e-022
gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA librar... 100 2e-019
gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus t... 92 4e-017
gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus ... 92 4e-017
gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Popul... 90 2e-016
gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichoca... 88 6e-016
gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus ... 82 4e-014
gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA librar... 78 6e-013
gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus ... 78 6e-013
gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cD... 66 2e-009
gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Po... 66 2e-009
gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid lib... 66 2e-009
gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus ... 66 2e-009
gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus... 66 2e-009
gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus... 66 2e-009
gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichoca... 64 9e-009
gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichoca... 64 9e-009
gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in... 64 9e-009
gb|CV227499.1|CV227499 WS0167.B21_F18 PT-DX-A-7 Populus tri... 64 9e-009
gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Popul... 64 9e-009
gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus t... 64 9e-009
gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated wit... 64 9e-009
gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Pop... 64 9e-009
gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA librar... 62 4e-008
gb|BU813345.1|BU813345 N009C11 Populus bark cDNA library Po... 60 1e-007
gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA li... 58 6e-007
gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Popul... 48 5e-004
gb|BU881855.1|BU881855 UM68TD08 Populus flower cDNA library... 46 0.002
gb|BU820590.1|BU820590 UB11CPH01 Populus tremula cambium cD... 44 0.008
gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichoca... 42 0.033
gb|CN522760.1|CN522760 GQ0123.B3_C19 GQ012 Populus trichoca... 42 0.033
>gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 3', mRNA sequence
Length = 632
Score = 121 bits (61), Expect = 4e-026
Identities = 148/177 (83%)
Strand = Plus / Plus
Query: 113 tcactccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctg 172
|||| ||||||||| || || ||||| ||||| || ||||| || ||||||||||| ||
Sbjct: 246 tcaccccttgttccttgaagagcggtccttcttatggccgccaagaatacgagaaatttg 305
Query: 173 cagacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgg 232
||||||||||||||| || |||||||||||||| | | ||||||||| || ||||| ||
Sbjct: 306 cagacctctactgaatgcttggttgaacagcatacgagtctggaactcagacacaaaagg 365
Query: 233 gaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcata 289
|||||| ||||||||||| | || ||||||| ||||||||||||| ||| |||||
Sbjct: 366 gaaccaggcgaggaatgcaactggagtgaacaggagcaagcccatgacgatttcata 422
>gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 5', mRNA sequence
Length = 599
Score = 121 bits (61), Expect = 4e-026
Identities = 148/177 (83%)
Strand = Plus / Minus
Query: 113 tcactccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctg 172
|||| ||||||||| || || ||||| ||||| || ||||| || ||||||||||| ||
Sbjct: 387 tcaccccttgttccttgaagagcggtccttcttatggccgccaagaatacgagaaatttg 328
Query: 173 cagacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgg 232
||||||||||||||| || |||||||||||||| | | ||||||||| || ||||| ||
Sbjct: 327 cagacctctactgaatgcttggttgaacagcatacgagtctggaactcagacacaaaagg 268
Query: 233 gaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcata 289
|||||| ||||||||||| | || ||||||| ||||||||||||| ||| |||||
Sbjct: 267 gaaccaggcgaggaatgcaactggagtgaacaggagcaagcccatgacgatttcata 211
>gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 426
Score = 107 bits (54), Expect = 7e-022
Identities = 148/178 (83%), Gaps = 1/178 (0%)
Strand = Plus / Minus
Query: 113 tcactccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctg 172
|||| ||||||||| || || ||||| ||||| || ||||| || ||||||||||| ||
Sbjct: 389 tcaccccttgttccttgaagagcggtccttcttatggccgccaagaatacgagaaatttg 330
Query: 173 cagacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgg 232
||||||||||||||| || |||||||||||||| | | ||||||||| || ||||| ||
Sbjct: 329 cagacctctactgaatgcttggttgaacagcatacgagtctggaactcagacacaaaagg 270
Query: 233 gaaccaagcga-ggaatgcgatcggggtgaacaacagcaagcccatgatgatctcata 289
|||||| |||| ||||||| | || ||||||| ||||||||||||| ||| |||||
Sbjct: 269 gaaccaggcgagggaatgcaactggagtgaacaggagcaagcccatgacgatttcata 212
>gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009C11 5', mRNA sequence
Length = 826
Score = 99.6 bits (50), Expect = 2e-019
Identities = 167/206 (81%)
Strand = Plus / Minus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagat 412
|||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct: 456 ttgtgcaatcaaaagcatcccccagccagttggcatgaaagcaagaatgcatacaaagat 397
Query: 413 gtcctgaactgtcatgtgtgggattgctatcaagattatgataatagagataaacgttat 472
|||||| |||||||| || || | ||| ||||| | | | ||| |||||||| ||||
Sbjct: 396 gtcctgcactgtcatatgaggcagtgcaatcaaagtgacaagaatggagataaatgttag 337
Query: 473 gaatatcagccccttgatcagccggaacacaagctggaactctgcactgaatttcctcct 532
|||||||| ||||| || || |||||| |||||||||| | |||||||| || | ||
Sbjct: 336 gaatatcattcccttaattagacggaacgcaagctggaagttagcactgaactttcgccg 277
Query: 533 gccaactgatacagtcttcatcacga 558
||||| ||||| |||||||||||||
Sbjct: 276 cccaacagataccgtcttcatcacga 251
Score = 60.0 bits (30), Expect = 1e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| || ||||||||||| || || |||||||||||||| | | |||||| ||
Sbjct: 647 cgagaaatttggagacctctactaaatgcttggttgaacagcatacgagtctggaattca 588
Query: 222 gaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatg 281
|| ||||| || ||||| || |||||||| | || ||||||| ||||||||||| |||
Sbjct: 587 gacacaaatggaaaccaggcaaggaatgcaactggagtgaacaggagcaagcccataatg 528
Query: 282 at 283
||
Sbjct: 527 at 526
Score = 42.1 bits (21), Expect = 0.033
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 699 cgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
||||||||||| || | |||| |||||| |||| ||||||||||||
Sbjct: 110 cgctttccagagtgacgaagatgctcctgttcttcttcccaccatga 64
>gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_N04 3', mRNA sequence
Length = 722
Score = 91.7 bits (46), Expect = 4e-017
Identities = 166/206 (80%)
Strand = Plus / Plus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagat 412
|||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct: 420 ttgtgcaatcaaaagcatcccccagccagttggcatgaaagcaagaatgcatacaaagat 479
Query: 413 gtcctgaactgtcatgtgtgggattgctatcaagattatgataatagagataaacgttat 472
|||||| || ||||| || || | ||| ||||| | | | ||| |||||||| ||||
Sbjct: 480 gtcctgcaccgtcatatgaggcagtgcaatcaaagtgacaagaatggagataaatgttag 539
Query: 473 gaatatcagccccttgatcagccggaacacaagctggaactctgcactgaatttcctcct 532
|||||||| ||||| || || |||||| |||||||||| | |||||||| || | ||
Sbjct: 540 gaatatcattcccttaattagacggaacgcaagctggaagttagcactgaactttcgccg 599
Query: 533 gccaactgatacagtcttcatcacga 558
||||| ||||| |||||||||||||
Sbjct: 600 cccaacagatacggtcttcatcacga 625
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| |||||||||||||| || || |||||||||||||| | | |||||| ||
Sbjct: 229 cgagaaatttgcagacctctactaaatgcttggttgaacagcatacgagtctggaattca 288
Query: 222 gaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccat 277
|| ||||| || ||||| || |||||||| | || ||||||| |||||||||||
Sbjct: 289 gacacaaatggaaaccaggcaaggaatgcaactggagtgaacaggagcaagcccat 344
>gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 3', mRNA sequence
Length = 735
Score = 91.7 bits (46), Expect = 4e-017
Identities = 166/206 (80%)
Strand = Plus / Plus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagat 412
|||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct: 420 ttgtgcaatcaaaagcatcccccagccagttggcatgaaagcaagaatgcatacaaagat 479
Query: 413 gtcctgaactgtcatgtgtgggattgctatcaagattatgataatagagataaacgttat 472
|||||| || ||||| || || | ||| ||||| | | | ||| |||||||| ||||
Sbjct: 480 gtcctgcaccgtcatatgaggcagtgcaatcaaagtgacaagaatggagataaatgttag 539
Query: 473 gaatatcagccccttgatcagccggaacacaagctggaactctgcactgaatttcctcct 532
|||||||| ||||| || || |||||| |||||||||| | |||||||| || | ||
Sbjct: 540 gaatatcattcccttaattagacggaacgcaagctggaagttagcactgaactttcgccg 599
Query: 533 gccaactgatacagtcttcatcacga 558
||||| ||||| |||||||||||||
Sbjct: 600 cccaacagatacggtcttcatcacga 625
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| |||||||||||||| || || |||||||||||||| | | |||||| ||
Sbjct: 229 cgagaaatttgcagacctctactaaatgcttggttgaacagcatacgagtctggaattca 288
Query: 222 gaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccat 277
|| ||||| || ||||| || |||||||| | || ||||||| |||||||||||
Sbjct: 289 gacacaaatggaaaccaggcaaggaatgcaactggagtgaacaggagcaagcccat 344
>gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_J09 3', mRNA sequence
Length = 834
Score = 89.7 bits (45), Expect = 2e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
||||| |||||||||||||| ||||| ||||| |||||||||||||| || ||||| ||
Sbjct: 444 ccccagccagttggcatgaaagcaagaatgcatacaaagatgtcctgcaccgtcatatga 503
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
|| | ||| ||||| | | | ||| |||||||| |||| |||||||| ||||| ||
Sbjct: 504 ggcagtgcaatcaaagtgacaagaatggagataaatgttaggaatatcattcccttaatt 563
Query: 492 agccggaacacaagctggaactctgcactgaatttcctcctgccaactgatacagtcttc 551
|| |||||| |||||||||| | |||||||| || | || ||||| ||||||||||||
Sbjct: 564 agacggaacgcaagctggaagttagcactgaactttcgccgcccaacagatacagtcttc 623
Query: 552 atcac 556
|||||
Sbjct: 624 atcac 628
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| |||||||||||||| || || |||||||||||||| | | |||||| ||
Sbjct: 234 cgagaaatttgcagacctctactaaatgcttggttgaacagcatacgagtctggaattca 293
Query: 222 gaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccat 277
|| ||||| || ||||| || |||||||| | || ||||||| |||||||||||
Sbjct: 294 gacacaaatggaaaccaggcaaggaatgcaactggagtgaacaggagcaagcccat 349
Score = 48.1 bits (24), Expect = 5e-004
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 696 ccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||||||||||||| || | |||| |||||| |||| ||||||||||||
Sbjct: 768 ccacgctttccagagtgacgaagatgctcctgttcttcttcccaccatga 817
>gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_G13 5', mRNA sequence
Length = 686
Score = 87.7 bits (44), Expect = 6e-016
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||||||||||||||| || |||||||||||||| | | |||||| ||
Sbjct: 431 cgagaaatttgcagacctctactgaatgcttggttgaacagcatacgagtctggaattca 372
Query: 222 gaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccat 277
|| ||||| |||||||| ||||||||||| | || ||||||| |||||||||||
Sbjct: 371 gacacaaaagggaaccaggcgaggaatgcaactggagtgaacaggagcaagcccat 316
Score = 52.0 bits (26), Expect = 3e-005
Identities = 76/90 (84%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 468 gttatgaatatcagccccttgatcagccggaacacaagctggaactctgcactgaa-ttt 526
|||| |||||||| |||||||| || || |||||||||||||| | |||||||| |||
Sbjct: 125 gttaggaatatcattcccttgattagacgaaacacaagctggaagttagcactgaacttt 66
Query: 527 cctcctgccaactgatacagtcttcatcac 556
| || | ||||| |||||||||||||||||
Sbjct: 65 cgtcgt-ccaacagatacagtcttcatcac 37
>gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_H14 3', mRNA sequence
Length = 677
Score = 81.8 bits (41), Expect = 4e-014
Identities = 158/197 (80%)
Strand = Plus / Plus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagat 412
|||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct: 420 ttgtgcaatcaaaagcatcccccagccagttggcatgaaagcaagaatgcatacaaagat 479
Query: 413 gtcctgaactgtcatgtgtgggattgctatcaagattatgataatagagataaacgttat 472
|||||| || ||||| || || | ||| ||||| | | | ||| |||||||| ||||
Sbjct: 480 gtcctgcaccgtcatatgaggcagtgcaatcaaagtgacaagaatggagataaatgttag 539
Query: 473 gaatatcagccccttgatcagccggaacacaagctggaactctgcactgaatttcctcct 532
|||||||| ||||| || || |||||| |||||||||| | |||||||| || | ||
Sbjct: 540 gaatatcattcccttaattagacggaacgcaagctggaagttagcactgaactttcgccg 599
Query: 533 gccaactgatacagtct 549
||||| ||||||||||
Sbjct: 600 cccaacagatacagtct 616
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| |||||||||||||| || || |||||||||||||| | | |||||| ||
Sbjct: 229 cgagaaatttgcagacctctactaaatgcttggttgaacagcatacgagtctggaattca 288
Query: 222 gaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccat 277
|| ||||| || ||||| || |||||||| | || ||||||| |||||||||||
Sbjct: 289 gacacaaatggaaaccaggcaaggaatgcaactggagtgaacaggagcaagcccat 344
>gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 371
Score = 77.8 bits (39), Expect = 6e-013
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 171 tgcagacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaac 230
|||||||||||| |||| || ||||||| |||||||| | |||||| || || |||||
Sbjct: 205 tgcagacctctattgaatgcttggttgaccagcatccgagtctggaattcagacacaaaa 146
Query: 231 gggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctcata 289
|||||||| ||||||||||| | || ||||||| ||||||||||||| ||| |||||
Sbjct: 145 gggaaccaggcgaggaatgcaactggagtgaacaggagcaagcccatgacgatttcata 87
>gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 3', mRNA sequence
Length = 595
Score = 77.8 bits (39), Expect = 6e-013
Identities = 129/159 (81%)
Strand = Plus / Plus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagat 412
|||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct: 421 ttgtgcaatcaaaagcatcccccagccagttggcatgaaagcaagaatgcatacaaagat 480
Query: 413 gtcctgaactgtcatgtgtgggattgctatcaagattatgataatagagataaacgttat 472
|||||| || ||||| || || | ||| ||||| | | | ||| |||||||| ||||
Sbjct: 481 gtcctgcaccgtcatatgaggcagtgcaatcaaagtgacaagaatggagataaatgttag 540
Query: 473 gaatatcagccccttgatcagccggaacacaagctggaa 511
|||||||| ||||| || || |||||| ||||||||||
Sbjct: 541 gaatatcattcccttaattagacggaacgcaagctggaa 579
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| |||||||||||||| || || |||||||||||||| | | |||||| ||
Sbjct: 230 cgagaaatttgcagacctctactaaatgcttggttgaacagcatacgagtctggaattca 289
Query: 222 gaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccat 277
|| ||||| || ||||| || |||||||| | || ||||||| |||||||||||
Sbjct: 290 gacacaaatggaaaccaggcaaggaatgcaactggagtgaacaggagcaagcccat 345
>gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 497
Score = 65.9 bits (33), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 150 ccgcctaggatacgagaaatctgcagacctctactgaaggcctggttgaacagcatcctt 209
||||| || ||||| || ||||| ||||||| |||||| || |||||||||||||| |
Sbjct: 370 ccgccaagaatacgggagatctgaagacctcgactgaaagcttggttgaacagcattcga 311
Query: 210 ggctggaactccgaaacaaacgggaaccaagcgaggaatgc 250
| |||||||| |||||||| ||||||||||| | ||||||
Sbjct: 310 gtttggaactcggaaacaaatgggaaccaagccaagaatgc 270
>gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 65.9 bits (33), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 150 ccgcctaggatacgagaaatctgcagacctctactgaaggcctggttgaacagcatcctt 209
||||| || ||||| || ||||| ||||||| |||||| || |||||||||||||| |
Sbjct: 334 ccgccaagaatacgggagatctgaagacctcgactgaaagcttggttgaacagcattcga 275
Query: 210 ggctggaactccgaaacaaacgggaaccaagcgaggaatgc 250
| |||||||| |||||||| ||||||||||| | ||||||
Sbjct: 274 gtttggaactcggaaacaaatgggaaccaagccaagaatgc 234
>gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P12 3', mRNA sequence
Length = 683
Score = 65.9 bits (33), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 150 ccgcctaggatacgagaaatctgcagacctctactgaaggcctggttgaacagcatcctt 209
||||| || ||||| || ||||| ||||||| |||||| || |||||||||||||| |
Sbjct: 382 ccgccaagaatacgggagatctgaagacctcgactgaaagcttggttgaacagcattcga 441
Query: 210 ggctggaactccgaaacaaacgggaaccaagcgaggaatgc 250
| |||||||| |||||||| ||||||||||| | ||||||
Sbjct: 442 gtttggaactcggaaacaaatgggaaccaagccaagaatgc 482
>gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_K13 3', mRNA sequence
Length = 735
Score = 65.9 bits (33), Expect = 2e-009
Identities = 129/161 (80%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 416 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 475
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| |||||||| ||||||||||| | |||||| | || ||||||| ||||| ||||||
Sbjct: 476 tcggaaacaaatgggaaccaagccaagaatgcaacgggtgtgaacagaagcaaacccatg 535
Query: 279 atgatctcatagcctcgggcaagcgccttgaccgatcccca 319
| || ||||| || || ||||| | | ||||||||||||
Sbjct: 536 actatttcataaccacgagcaagtgtccggaccgatcccca 576
>gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01914_B17 3', mRNA sequence
Length = 679
Score = 65.9 bits (33), Expect = 2e-009
Identities = 129/161 (80%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 416 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 475
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| |||||||| ||||||||||| | |||||| | || ||||||| ||||| ||||||
Sbjct: 476 tcggaaacaaatgggaaccaagccaagaatgcaacgggtgtgaacagaagcaaacccatg 535
Query: 279 atgatctcatagcctcgggcaagcgccttgaccgatcccca 319
| || ||||| || || ||||| | | ||||||||||||
Sbjct: 536 actatttcataaccacgagcaagtgtccggaccgatcccca 576
>gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_F22 3', mRNA sequence
Length = 664
Score = 65.9 bits (33), Expect = 2e-009
Identities = 129/161 (80%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 288 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 229
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| |||||||| ||||||||||| | |||||| | || ||||||| ||||| ||||||
Sbjct: 228 tcggaaacaaatgggaaccaagccaagaatgcaacgggtgtgaacagaagcaaacccatg 169
Query: 279 atgatctcatagcctcgggcaagcgccttgaccgatcccca 319
| || ||||| || || ||||| | | ||||||||||||
Sbjct: 168 actatttcataaccacgagcaagtgtccggaccgatcccca 128
>gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_H22 5', mRNA sequence
Length = 481
Score = 63.9 bits (32), Expect = 9e-009
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 154 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 95
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgc 250
|| |||||||| ||||||||||| | ||||||
Sbjct: 94 tcggaaacaaatgggaaccaagccaagaatgc 63
>gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_A18 5', mRNA sequence
Length = 536
Score = 63.9 bits (32), Expect = 9e-009
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 143 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 84
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgc 250
|| |||||||| ||||||||||| | ||||||
Sbjct: 83 tcggaaacaaatgggaaccaagccaagaatgc 52
>gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003A08F1, mRNA sequence
Length = 527
Score = 63.9 bits (32), Expect = 9e-009
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 244 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 303
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgc 250
|| |||||||| ||||||||||| | ||||||
Sbjct: 304 tcggaaacaaatgggaaccaagccaagaatgc 335
>gb|CV227499.1|CV227499 WS0167.B21_F18 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_F18
3', mRNA sequence
Length = 340
Score = 63.9 bits (32), Expect = 9e-009
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcat 205
|||||||| ||||||||||||||||| || ||||||||||||||
Sbjct: 276 cgagaaatttgcagacctctactgaatgcttggttgaacagcat 319
>gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_H24 3', mRNA sequence
Length = 839
Score = 63.9 bits (32), Expect = 9e-009
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 417 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 476
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgc 250
|| |||||||| ||||||||||| | ||||||
Sbjct: 477 tcggaaacaaatgggaaccaagccaagaatgc 508
Score = 42.1 bits (21), Expect = 0.033
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| |||| |||||||||| | |||| | || ||||| ||||||||||| ||
Sbjct: 680 tgtcatgtgagggagtgctatcaaggtgatgaatacggaaataaaagttatgaatatgag 739
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactga 522
||||| || ||||| |||| || ||||| | ||||||||
Sbjct: 740 acccttaatgagccgaaacaagagttggaagtttgcactga 780
>gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_C07 3', mRNA sequence
Length = 826
Score = 63.9 bits (32), Expect = 9e-009
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 402 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 461
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgc 250
|| |||||||| ||||||||||| | ||||||
Sbjct: 462 tcggaaacaaatgggaaccaagccaagaatgc 493
Score = 42.1 bits (21), Expect = 0.033
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| |||| |||||||||| | |||| | || ||||| ||||||||||| ||
Sbjct: 665 tgtcatgtgagggagtgctatcaaggtgatgaatacggaaataaaagttatgaatatgag 724
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactga 522
||||| || ||||| |||| || ||||| | ||||||||
Sbjct: 725 acccttaatgagccgaaacaagagttggaagtttgcactga 765
>gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 664
Score = 63.9 bits (32), Expect = 9e-009
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 334 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 275
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgc 250
|| |||||||| ||||||||||| | ||||||
Sbjct: 274 tcggaaacaaatgggaaccaagccaagaatgc 243
>gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_F05 3', mRNA sequence
Length = 884
Score = 63.9 bits (32), Expect = 9e-009
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| || ||||| ||||||| |||||| || |||||||||||||| | | ||||||
Sbjct: 419 atacgggagatctgaagacctcgactgaaagcttggttgaacagcattcgagtttggaac 478
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgc 250
|| |||||||| ||||||||||| | ||||||
Sbjct: 479 tcggaaacaaatgggaaccaagccaagaatgc 510
Score = 42.1 bits (21), Expect = 0.033
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| |||| |||||||||| | |||| | || ||||| ||||||||||| ||
Sbjct: 682 tgtcatgtgagggagtgctatcaaggtgatgaatacggaaataaaagttatgaatatgag 741
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactga 522
||||| || ||||| |||| || ||||| | ||||||||
Sbjct: 742 acccttaatgagccgaaacaagagttggaagtttgcactga 782
>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 737
Score = 61.9 bits (31), Expect = 4e-008
Identities = 149/188 (79%), Gaps = 1/188 (0%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaagg-atgcaaacaaagatgtcctgaactgtcatgtg 430
||||| |||||||||||||| |||||| ||||| |||||||| ||||| | ||||| ||
Sbjct: 709 ccccagccagttggcatgaaagcaaggaatgcatacaaagatntcctgcncngtcatatg 650
Query: 431 tgggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgat 490
|| | ||| ||||| | | | ||| |||||||| |||| |||||||| ||||| ||
Sbjct: 649 aggcagtgcaatcaaagtgacaagaatggagataaatgttaggaatatcattcccttaat 590
Query: 491 cagccggaacacaagctggaactctgcactgaatttcctcctgccaactgatacagtctt 550
|| |||||| |||||||||| | |||||||| || | || ||||| |||| |||||
Sbjct: 589 tagacggaacgcaagctggaagttagcactgaactttcgccgcccaacagatatcgtctt 530
Query: 551 catcacga 558
||||||||
Sbjct: 529 catcacga 522
Score = 48.1 bits (24), Expect = 5e-004
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 696 ccacgctttccagaatgcctaagannctcctgctctttttcccaccatga 745
|||||||||||||| || | |||| |||||| |||| ||||||||||||
Sbjct: 384 ccacgctttccagagtgacgaagatgctcctgttcttcttcccaccatga 335
>gb|BU813345.1|BU813345 N009C11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 182
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 354 tgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatg 413
||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct: 182 tgtgcaatcaaaagcatcccccagccagttggcatgaaagcaagaatgcattcaaagatg 123
Query: 414 tcctgaactgtcat 427
||||| |||||||
Sbjct: 122 tcctgcgctgtcat 109
>gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 694
Score = 58.0 bits (29), Expect = 6e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 150 ccgcctaggatacgagaaatctgcagacctctactgaaggcctggttgaacagcatcctt 209
||||| || ||||| || ||||| ||||||| |||||| || |||||||||||||| |
Sbjct: 453 ccgccaagaatacgggagatctgaagacctcgactgaaagcttggttgaacagcattcga 394
Query: 210 ggctggaactccgaaacaaacgggaaccaagcgaggaatgc 250
| |||||||| |||||||| |||||| |||| | ||||||
Sbjct: 393 gtttggaactcggaaacaaatgggaactaagccaagaatgc 353
Score = 42.1 bits (21), Expect = 0.033
Identities = 132/169 (78%)
Strand = Plus / Minus
Query: 354 tgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatg 413
||||| ||||| |||| |||||||||| |||| ||| ||||| ||||| || | |||
Sbjct: 249 tgtgcaatcagcagcagtccccatccagaaggcaagaatgcaagaatgcagactatgata 190
Query: 414 tcctgaactgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatg 473
||| | | ||||||||| |||| |||||| ||| | |||| | || ||||| ||||||
Sbjct: 189 tcccgtattgtcatgtgagggagtgctattaaggtgatgaatacggaaataaaagttatg 130
Query: 474 aatatcagccccttgatcagccggaacacaagctggaactctgcactga 522
||||| || ||||| || ||||| |||| || ||||| | ||||||||
Sbjct: 129 aatatgagacccttaatgagccgaaacaagagttggaagtttgcactga 81
>gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_K15 3', mRNA sequence
Length = 495
Score = 48.1 bits (24), Expect = 5e-004
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| |||| ||||||||| || || |||||||||||||| | | |||||| ||
Sbjct: 237 cgagaaatttgcaaacctctactaaatgcttggttgaacagcatacgagtctggaattca 296
Query: 222 gaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccat 277
|| |||| || ||||| || |||||||| | || ||||||| |||||||||||
Sbjct: 297 gacccaaatggaaaccaggcaaggaatgcaactggagtgaacaggagcaagcccat 352
>gb|BU881855.1|BU881855 UM68TD08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 476
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcat 205
||||| || ||||| ||||||| |||||| || ||||||||||||||
Sbjct: 82 atacgggagatctgaagacctcgactgaaagcttggttgaacagcat 36
>gb|BU820590.1|BU820590 UB11CPH01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 510
Score = 44.1 bits (22), Expect = 0.008
Identities = 132/169 (78%)
Strand = Plus / Minus
Query: 354 tgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatg 413
||||| ||||| |||| |||||||||| |||| ||| ||||| ||||| || | |||
Sbjct: 442 tgtgcnatcagcagcagtccccatccagaaggcaagaatgcaagaatgcagactatgata 383
Query: 414 tcctgaactgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatg 473
||| | | ||||||||| |||| |||||| ||| | |||| | || ||||| ||||||
Sbjct: 382 tcccgtattgtcatgtgagggagtgctattaaggtgatgaatacggaaataaaagttatg 323
Query: 474 aatatcagccccttgatcagccggaacacaagctggaactctgcactga 522
||||| || ||||| || ||||| |||| || ||||| | ||||||||
Sbjct: 322 aatatgagacccttaatgagccgaaacaagagttggaagtttgcactga 274
>gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_E01 5', mRNA sequence
Length = 508
Score = 42.1 bits (21), Expect = 0.033
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| |||| |||||||||| | |||| | || ||||| ||||||||||| ||
Sbjct: 423 tgtcatgtgagggagtgctatcaaggtgatgaatacggaaataaaagttatgaatatgag 364
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactga 522
||||| || ||||| |||| || ||||| | ||||||||
Sbjct: 363 acccttaatgagccgaaacaagagttggaagtttgcactga 323
>gb|CN522760.1|CN522760 GQ0123.B3_C19 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0123_C19 5', mRNA sequence
Length = 336
Score = 42.1 bits (21), Expect = 0.033
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
||||||||| |||| |||||||||| | |||| | || ||||| ||||||||||| ||
Sbjct: 117 tgtcatgtgagggagtgctatcaaggtgatgaatacggaaataaaagttatgaatatgag 58
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactga 522
||||| || ||||| |||| || ||||| | ||||||||
Sbjct: 57 acccttaatgagccgaaacaagagttggaagtttgcactga 17
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,054
Number of Sequences: 369679
Number of extensions: 77054
Number of successful extensions: 19808
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19696
Number of HSP's gapped (non-prelim): 100
length of query: 830
length of database: 203,408,664
effective HSP length: 19
effective length of query: 811
effective length of database: 196,384,763
effective search space: 159268042793
effective search space used: 159268042793
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)