BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.3
(1028 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV269504.1|CV269504 WS0208.B21_G24 PTxN-IB-N-A-11 Populu... 88 8e-016
gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA li... 82 5e-014
gb|CN518723.1|CN518723 GQ0104.B3_E10 GQ010 Populus trichoca... 80 2e-013
gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus ... 80 2e-013
gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus... 72 5e-011
gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA li... 66 3e-009
gb|CA823228.1|CA823228 R22G04 two-month-old roots from clon... 66 3e-009
gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichoca... 62 4e-008
gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus ... 62 4e-008
>gb|CV269504.1|CV269504 WS0208.B21_G24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_G24 3', mRNA sequence
Length = 719
Score = 87.7 bits (44), Expect = 8e-016
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||
Sbjct: 654 gatgatctgcaggaacttgtgcattccctctcatatgtataccaaagaagcacgactgcc 595
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttc 659
||||| || ||||| || |||||||| || || ||||||||| |||| | ||||||||
Sbjct: 594 atatctgtagttgcaccaatctgctatgcccacctggcagctactcaaatgggccagttt 535
Query: 660 ataaagtt 667
|| |||||
Sbjct: 534 atgaagtt 527
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 477 atgatcgggactacgaggccaactcactacca 508
||||| |||||||| ||||| |||||||||||
Sbjct: 717 atgattgggactacaaggcctactcactacca 686
>gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 574
Score = 81.8 bits (41), Expect = 5e-014
Identities = 134/165 (81%)
Strand = Plus / Plus
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|||||||||||||| || |||||||| ||||| ||||| | |||||| ||||| || |||
Sbjct: 253 gatgatctgcaggaacttgtgcattccctctcatatgtatgccaaagaagcacgactgcc 312
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttc 659
|| || || ||||| || |||||||| || || ||||||||| |||| | ||||||||
Sbjct: 313 atctctgtagttgcaccaatctgctatgcccacctggcagctactcaaatgggccagttt 372
Query: 660 ataaagttcgatgagatgtcggagacgtcctccagtcatggcggg 704
|| ||||| || || | ||| ||||| ||||| || |||||||||
Sbjct: 373 atgaagtttgaagacacgtccgagacttcctcaagccatggcggg 417
Score = 67.9 bits (34), Expect = 7e-010
Identities = 118/146 (80%)
Strand = Plus / Plus
Query: 363 cacactaaatttttcattcctggaaagccagataatgtcccaccaggaactgtggtggac 422
||||||||||||||| |||||| || |||||||||||||| || || | | |||
Sbjct: 76 cacactaaatttttccaacctggatctcctgataatgtcccacctggtacgatcattgac 135
Query: 423 aacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatc 482
||||||||||||||||||| ||| || ||||| | ||||| |||||||| |||||
Sbjct: 136 aacaaagtctgccatccaagaaacaatgacttctatctctgtgctcatgctgggatgatt 195
Query: 483 gggactacgaggccaactcactacca 508
|||||||| ||||| |||||||||||
Sbjct: 196 gggactacaaggcctactcactacca 221
>gb|CN518723.1|CN518723 GQ0104.B3_E10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_E10 5', mRNA sequence
Length = 695
Score = 79.8 bits (40), Expect = 2e-013
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||
Sbjct: 91 gatgatctgcaggaacttgtgcattccctctcatatgtataccaaagaagcacgactgcc 150
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttc 659
|| || || ||||| || |||||||| || || ||||||||| |||| | ||||||||
Sbjct: 151 atctctgtagttgcaccaatctgctatgcccacctggcagctactcaaatgggccagttt 210
Query: 660 ataaagtt 667
|| |||||
Sbjct: 211 atgaagtt 218
>gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_P22 3', mRNA sequence
Length = 744
Score = 79.8 bits (40), Expect = 2e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||
Sbjct: 578 gatgatctgcaggaacttgtgcattccctctcatatgtataccaaagaagcacgactgcc 519
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttc 659
|| || || ||||| || |||||||| || || ||||||||| |||| | ||||||||
Sbjct: 518 atctctgtagttgcaccaatctgctatgcccacctggcagctactcaaatgggccagttt 459
Query: 660 ataaagtt 667
|| |||||
Sbjct: 458 atgaagtt 451
Score = 65.9 bits (33), Expect = 3e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
|||||||||||||||||||||| ||| || ||||| | ||||| |||||||| |||
Sbjct: 698 gacaacaaagtctgccatccaagaaacaatgacttctatctctgtgctcatgctgggatg 639
Query: 480 atcgggactacgaggccaactcactacca 508
|| |||||||| ||||| |||||||||||
Sbjct: 638 attgggactacaaggcctactcactacca 610
>gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_G04 3', mRNA sequence
Length = 809
Score = 71.9 bits (36), Expect = 5e-011
Identities = 126/156 (80%)
Strand = Plus / Minus
Query: 222 atcatattcagggacggtgttagcgaaagtcagtttaatcaggtgctgaacattgagttg 281
|||||||||||||| || |||||||| ||||| ||||| || || ||||| ||| ||
Sbjct: 771 atcatattcagggatggagttagcgagtcacagttcaatcaagtcctcaacatcgagctg 712
Query: 282 caacaaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttg 341
| |||||||| ||||| ||||| || |||||||| | ||| ||||||||||| |
Sbjct: 711 gatcaaatcattgaggcatgcaagttccttgatgaaagctggtcacccaagttcactgtt 652
Query: 342 attattgcccagaagaatcatcacactaaatttttc 377
||| |||| ||||| |||||||||||||||||||||
Sbjct: 651 attgttgcacagaaaaatcatcacactaaatttttc 616
Score = 61.9 bits (31), Expect = 4e-008
Identities = 133/167 (79%)
Strand = Plus / Minus
Query: 450 gatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccac 509
||||||||||||||||| ||||| || ||||| || || || |||||||| || || |||
Sbjct: 543 gatttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcac 484
Query: 510 atcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctc 569
| || |||||||| ||||| |||||||||| |||||| || | || || |
Sbjct: 483 gttcttttagatgagattggcttttcagctgatgatctacaggagttgattcactctttg 424
Query: 570 tcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcc 616
||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct: 423 tcttatgtgtaccaaagaagcacaacagcaatatctgtagttgctcc 377
>gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 65.9 bits (33), Expect = 3e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
|||||||||||||||||||||| ||| || ||||| | ||||| |||||||| |||
Sbjct: 61 gacaacaaagtctgccatccaagaaacaatgacttctatctctgtgctcatgctgggatg 120
Query: 480 atcgggactacgaggccaactcactacca 508
|| |||||||| ||||| |||||||||||
Sbjct: 121 attgggactacaaggcctactcactacca 149
Score = 60.0 bits (30), Expect = 2e-007
Identities = 130/162 (80%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgt-gtaccaaaggagcacaacagc 598
|||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || ||
Sbjct: 181 gatgatctgcaggaacttgtgcattccctctcatatgtcataccaaagaagcacgactgc 240
Query: 599 catatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagtt 658
||| || || | ||| || |||||||| || || ||||||||| |||| | ||||||||
Sbjct: 241 catctctgtagctgcaccaatctgctatgcccacctggcagctactcaaatgggccagtt 300
Query: 659 cataaagttcgatgagatgtcggagacgtcctccagtcatgg 700
|| ||||| || || | ||| ||||| ||||| || |||||
Sbjct: 301 tatgaagtttgaagacacgtccgagacttcctcaagccatgg 342
>gb|CA823228.1|CA823228 R22G04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 659
Score = 65.9 bits (33), Expect = 3e-009
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|||||||||||||| | |||||||| ||||| ||||| |||||||| ||||| || |||
Sbjct: 539 gatgatctgcaggancctgtgcattccctctcatatgtataccaaagaagcacgactgcc 598
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctca 646
|| || || || || || |||||||| || || ||||||||| ||||
Sbjct: 599 atctctgtagtngcaccaatctgctatgcccacctggcagctactca 645
Score = 65.9 bits (33), Expect = 3e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
|||||||||||||||||||||| ||| || ||||| | ||||| |||||||| |||
Sbjct: 419 gacaacaaagtctgccatccaagaaacaatgacttctatctctgtgctcatgctgggatg 478
Query: 480 atcgggactacgaggccaactcactacca 508
|| |||||||| ||||| |||||||||||
Sbjct: 479 attgggactacaaggcctactcactacca 507
>gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_L05 5', mRNA sequence
Length = 554
Score = 61.9 bits (31), Expect = 4e-008
Identities = 133/167 (79%)
Strand = Plus / Plus
Query: 450 gatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccac 509
||||||||||||||||| ||||| || ||||| || || || |||||||| || || |||
Sbjct: 65 gatttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcac 124
Query: 510 atcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctc 569
| || |||||||| ||||| |||||||||| |||||| || | || || |
Sbjct: 125 gttcttttagatgagattggcttttcagctgatgatctacaggagttgattcactctttg 184
Query: 570 tcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcc 616
||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct: 185 tcttatgtgtaccaaagaagcacaacagcaatatctgtagttgctcc 231
>gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_O23 3', mRNA sequence
Length = 872
Score = 61.9 bits (31), Expect = 4e-008
Identities = 133/167 (79%)
Strand = Plus / Minus
Query: 450 gatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccac 509
||||||||||||||||| ||||| || ||||| || || || |||||||| || || |||
Sbjct: 558 gatttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcac 499
Query: 510 atcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctc 569
| || |||||||| ||||| |||||||||| |||||| || | || || |
Sbjct: 498 gttcttttagatgagattggcttttcagctgatgatctacaggagttgattcactctttg 439
Query: 570 tcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcc 616
||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct: 438 tcttatgtgtaccaaagaagcacaacagcaatatctgtagttgctcc 392
Score = 60.0 bits (30), Expect = 2e-007
Identities = 102/126 (80%)
Strand = Plus / Minus
Query: 252 cagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgcaaatttctt 311
||||| ||||| || || ||||| ||| || | |||||||| ||||| ||||| || |||
Sbjct: 838 cagttcaatcaagtcctcaacatcgagctggatcaaatcattgaggcatgcaagttcctt 779
Query: 312 gatgagaaatggaatcccaagttcacgttgattattgcccagaagaatcatcacactaaa 371
||||| | ||| ||||||||||| | ||| |||| ||||| |||||||||||||||
Sbjct: 778 gatgaaagctggtcacccaagttcactgttattgttgcacagaaaaatcatcacactaaa 719
Query: 372 tttttc 377
||||||
Sbjct: 718 tttttc 713
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,146
Number of Sequences: 369679
Number of extensions: 117146
Number of successful extensions: 32344
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32301
Number of HSP's gapped (non-prelim): 40
length of query: 1028
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1009
effective length of database: 196,384,763
effective search space: 198152225867
effective search space used: 198152225867
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)