BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.1
(867 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA li... 64 9e-009
gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA li... 64 9e-009
gb|CA823228.1|CA823228 R22G04 two-month-old roots from clon... 64 9e-009
gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus ... 64 9e-009
gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichoca... 54 9e-006
gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus ... 54 9e-006
gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus... 54 9e-006
gb|CV269504.1|CV269504 WS0208.B21_G24 PTxN-IB-N-A-11 Populu... 42 0.035
>gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 63.9 bits (32), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
|||||||||||||||| |||||||| ||| || ||||| | ||| | |||||||| |
Sbjct: 59 ttgacaacaaagtctgccatccaagaaacaatgacttctatctctgtgctcatgctggga 118
Query: 272 tgattgggactaccaggccaactcacta 299
||||||||||||| ||||| ||||||||
Sbjct: 119 tgattgggactacaaggcctactcacta 146
>gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 574
Score = 63.9 bits (32), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
|||||||||||||||| |||||||| ||| || ||||| | ||| | |||||||| |
Sbjct: 131 ttgacaacaaagtctgccatccaagaaacaatgacttctatctctgtgctcatgctggga 190
Query: 272 tgattgggactaccaggccaactcacta 299
||||||||||||| ||||| ||||||||
Sbjct: 191 tgattgggactacaaggcctactcacta 218
>gb|CA823228.1|CA823228 R22G04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 659
Score = 63.9 bits (32), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
|||||||||||||||| |||||||| ||| || ||||| | ||| | |||||||| |
Sbjct: 417 ttgacaacaaagtctgccatccaagaaacaatgacttctatctctgtgctcatgctggga 476
Query: 272 tgattgggactaccaggccaactcacta 299
||||||||||||| ||||| ||||||||
Sbjct: 477 tgattgggactacaaggcctactcacta 504
>gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_P22 3', mRNA sequence
Length = 744
Score = 63.9 bits (32), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
|||||||||||||||| |||||||| ||| || ||||| | ||| | |||||||| |
Sbjct: 700 ttgacaacaaagtctgccatccaagaaacaatgacttctatctctgtgctcatgctggga 641
Query: 272 tgattgggactaccaggccaactcacta 299
||||||||||||| ||||| ||||||||
Sbjct: 640 tgattgggactacaaggcctactcacta 613
>gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_L05 5', mRNA sequence
Length = 554
Score = 54.0 bits (27), Expect = 9e-006
Identities = 132/167 (79%)
Strand = Plus / Plus
Query: 244 gatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatcac 303
||||||||||||||| ||||||| || ||||| || || || |||||||| || ||||||
Sbjct: 65 gatttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcac 124
Query: 304 atcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgctc 363
| || || ||||| ||||| ||||||| || |||||| || | ||||| |
Sbjct: 125 gttcttttagatgagattggcttttcagctgatgatctacaggagttgattcactctttg 184
Query: 364 tcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 410
||||| ||||||||||| ||||||||||| ||||| || ||||||||
Sbjct: 185 tcttatgtgtaccaaagaagcacaacagcaatatctgtagttgctcc 231
>gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_O23 3', mRNA sequence
Length = 872
Score = 54.0 bits (27), Expect = 9e-006
Identities = 132/167 (79%)
Strand = Plus / Minus
Query: 244 gatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatcac 303
||||||||||||||| ||||||| || ||||| || || || |||||||| || ||||||
Sbjct: 558 gatttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcac 499
Query: 304 atcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgctc 363
| || || ||||| ||||| ||||||| || |||||| || | ||||| |
Sbjct: 498 gttcttttagatgagattggcttttcagctgatgatctacaggagttgattcactctttg 439
Query: 364 tcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 410
||||| ||||||||||| ||||||||||| ||||| || ||||||||
Sbjct: 438 tcttatgtgtaccaaagaagcacaacagcaatatctgtagttgctcc 392
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 140 ttgcccagaagaatcaccacactaaatttttc 171
|||| ||||| ||||| |||||||||||||||
Sbjct: 744 ttgcacagaaaaatcatcacactaaatttttc 713
>gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_G04 3', mRNA sequence
Length = 809
Score = 54.0 bits (27), Expect = 9e-006
Identities = 132/167 (79%)
Strand = Plus / Minus
Query: 244 gatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatcac 303
||||||||||||||| ||||||| || ||||| || || || |||||||| || ||||||
Sbjct: 543 gatttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcac 484
Query: 304 atcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgctc 363
| || || ||||| ||||| ||||||| || |||||| || | ||||| |
Sbjct: 483 gttcttttagatgagattggcttttcagctgatgatctacaggagttgattcactctttg 424
Query: 364 tcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 410
||||| ||||||||||| ||||||||||| ||||| || ||||||||
Sbjct: 423 tcttatgtgtaccaaagaagcacaacagcaatatctgtagttgctcc 377
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 140 ttgcccagaagaatcaccacactaaatttttc 171
|||| ||||| ||||| |||||||||||||||
Sbjct: 647 ttgcacagaaaaatcatcacactaaatttttc 616
>gb|CV269504.1|CV269504 WS0208.B21_G24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_G24 3', mRNA sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.035
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 271 atgattgggactaccaggccaactcacta 299
|||||||||||||| ||||| ||||||||
Sbjct: 717 atgattgggactacaaggcctactcacta 689
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,162
Number of Sequences: 369679
Number of extensions: 89162
Number of successful extensions: 23891
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23860
Number of HSP's gapped (non-prelim): 27
length of query: 867
length of database: 203,408,664
effective HSP length: 19
effective length of query: 848
effective length of database: 196,384,763
effective search space: 166534279024
effective search space used: 166534279024
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)