BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU882337.1|BU882337 UM75TF09 Populus flower cDNA library... 139 2e-031
gb|AJ775454.1|AJ775454 AJ775454 Populus euphratica shoot 3-... 139 2e-031
gb|CV244561.1|CV244561 WS0254.B21_P23 PT-MB-N-A-15 Populus ... 137 1e-030
gb|CN519649.1|CN519649 GQ0101.B3_G05 GQ010 Populus trichoca... 131 6e-029
gb|BP923867.1|BP923867 BP923867 full-length enriched poplar... 131 6e-029
gb|DV464049.1|DV464049 MTUNUL1.P22.E06 NUL Populus fremonti... 131 6e-029
gb|CV234506.1|CV234506 WS01215.B21.1_C17 PT-GT-FL-A-3 Popul... 125 4e-027
gb|CX183225.1|CX183225 D11_45-85_07.ab1 leaf inoculated wit... 123 1e-026
gb|CX186124.1|CX186124 G03_45-36_13.ab1 leaf inoculated wit... 123 1e-026
gb|BU862825.1|BU862825 S020D10 Populus imbibed seed cDNA li... 119 2e-025
gb|DT525965.1|DT525965 WS02046.C21_M05 PTxN-IB-N-A-11 Popul... 119 2e-025
gb|CX177522.1|CX177522 D05_45-64_07.ab1 leaf inoculated wit... 115 4e-024
gb|CX179547.1|CX179547 H04_45-86_16.ab1 leaf inoculated wit... 107 9e-022
gb|DN493554.1|DN493554 F008P43.5pR Populus flower cDNA libr... 107 9e-022
gb|CK096561.1|CK096561 UB19CPA07.3pR Populus active cambium... 100 2e-019
gb|DT477201.1|DT477201 WS02519.BR_E12 PT-MB-N-A-15 Populus ... 100 2e-019
gb|DT482237.1|DT482237 WS02519.B21_E12 PT-MB-N-A-15 Populus... 100 2e-019
gb|BU834179.1|BU834179 T057H06 Populus apical shoot cDNA li... 82 5e-014
gb|DT521622.1|DT521622 WS02034.B21_M15 PTxN-IB-N-A-11 Popul... 78 8e-013
gb|BU813276.1|BU813276 N007D06 Populus bark cDNA library Po... 74 1e-011
gb|CV238727.1|CV238727 WS0127.B21.1_M18 PT-GT-FL-A-3 Populu... 74 1e-011
gb|CV259669.1|CV259669 WS02011.B21_P11 PTxN-IB-N-A-11 Popul... 74 1e-011
gb|CV267249.1|CV267249 WS02031.B21_D19 PTxN-IB-N-A-11 Popul... 74 1e-011
gb|DT517501.1|DT517501 WS02434.B21_H18 PTxD-ICC-N-A-14 Popu... 74 1e-011
gb|BU819238.1|BU819238 UA41BPD03 Populus tremula cambium cD... 72 5e-011
gb|BU833878.1|BU833878 T053G07 Populus apical shoot cDNA li... 72 5e-011
gb|CK093615.1|CK093615 G126P02.3pR Populus tension wood cDN... 72 5e-011
gb|BI071855.1|BI071855 C065P04U Populus strain T89 leaves P... 70 2e-010
gb|CA926310.1|CA926310 MTU6CR.P13.E07 Aspen root cDNA Libra... 70 2e-010
gb|CA926355.1|CA926355 MTU6CR.P14.A10 Aspen root cDNA Libra... 70 2e-010
gb|CK106376.1|CK106376 UB19CPA07.5pR Populus active cambium... 70 2e-010
gb|BI139312.1|BI139312 F129P19Y Populus flower cDNA library... 66 3e-009
gb|CV229150.1|CV229150 WS01912.B21_G04 PT-DX-N-A-10 Populus... 66 3e-009
gb|CV230922.1|CV230922 WS0193.B21_A05 PT-DX-N-A-10 Populus ... 66 3e-009
gb|CV239040.1|CV239040 WS0231.B21_C06 PT-MB-A-13 Populus tr... 66 3e-009
gb|CV240840.1|CV240840 WS02510.B21_H22 PT-MB-N-A-15 Populus... 66 3e-009
gb|CV240860.1|CV240860 WS02510.B21_I19 PT-MB-N-A-15 Populus... 66 3e-009
gb|CV240900.1|CV240900 WS02510.B21_K18 PT-MB-N-A-15 Populus... 66 3e-009
gb|CV242073.1|CV242073 WS02514.B21.1_A22 PT-MB-N-A-15 Popul... 66 3e-009
gb|DT505615.1|DT505615 WS01811.C21_G11 PTxD-IL-N-A-9 Populu... 66 3e-009
gb|DV464474.1|DV464474 MTUNUL1.P28.A06 NUL Populus fremonti... 66 3e-009
gb|DV466281.1|DV466281 MTUNUL1.P49.E12 NUL Populus fremonti... 66 3e-009
gb|BU817616.1|BU817616 UA19CPB02 Populus tremula cambium cD... 54 1e-005
gb|CV273062.1|CV273062 WS0171.B21_I15 PTxD-NR-A-8 Populus t... 54 1e-005
gb|BP936722.1|BP936722 BP936722 full-length enriched poplar... 54 1e-005
gb|BP922245.1|BP922245 BP922245 full-length enriched poplar... 52 4e-005
gb|BU837606.1|BU837606 T103F12 Populus apical shoot cDNA li... 48 7e-004
gb|AI161911.1|AI161911 A009P42U Hybrid aspen plasmid librar... 46 0.003
gb|BU867502.1|BU867502 M101A09 Populus flower cDNA library ... 44 0.011
gb|CK090877.1|CK090877 F029P39.3pR Populus flower cDNA libr... 44 0.011
gb|CK091595.1|CK091595 F110P57.3pR Populus flower cDNA libr... 44 0.011
gb|CK098248.1|CK098248 A009P42.5pR Hybrid aspen plasmid lib... 44 0.011
gb|CV240203.1|CV240203 WS0234.B21_L15 PT-MB-A-13 Populus tr... 44 0.011
gb|CV244886.1|CV244886 WS0255.B21_O08 PT-MB-N-A-15 Populus ... 44 0.011
gb|BP934693.1|BP934693 BP934693 full-length enriched poplar... 44 0.011
gb|DT476029.1|DT476029 WS01228.B21_A13 PT-GT-FL-A-3 Populus... 44 0.011
gb|DT478079.1|DT478079 WS02521.BR_M17 PT-MB-N-A-15 Populus ... 44 0.011
gb|DT478396.1|DT478396 WS02522.BR_K17 PT-MB-N-A-15 Populus ... 44 0.011
gb|DT478407.1|DT478407 WS02522.BR_L05 PT-MB-N-A-15 Populus ... 44 0.011
gb|DT483148.1|DT483148 WS02521.B21_M17 PT-MB-N-A-15 Populus... 44 0.011
gb|DT483476.1|DT483476 WS02522.B21_L05 PT-MB-N-A-15 Populus... 44 0.011
gb|DT486261.1|DT486261 WS02530.B21_H18 PT-MB-N-A-15 Populus... 44 0.011
gb|DT490369.1|DT490369 WS02544.B21_M09 PT-MB-N-A-15 Populus... 44 0.011
gb|DT491877.1|DT491877 WS02549.C21_A24 PT-MB-N-A-15 Populus... 44 0.011
gb|DT515823.1|DT515823 WS02429.B21.1_J24 PTxD-ICC-N-A-14 Po... 44 0.011
gb|DT526046.1|DT526046 WS02046.C21_P17 PTxN-IB-N-A-11 Popul... 44 0.011
gb|BI131810.1|BI131810 G126P02Y Populus cambium cDNA librar... 42 0.043
gb|BU809253.1|BU809253 UL55PF05 Populus leaf cDNA library P... 42 0.043
gb|BU830162.1|BU830162 T004F11 Populus apical shoot cDNA li... 42 0.043
gb|BU886924.1|BU886924 R052C11 Populus root cDNA library Po... 42 0.043
gb|CA927607.1|CA927607 MTU6TR.P10.H12 Aspen root cDNA Libra... 42 0.043
gb|CK098437.1|CK098437 A014P57.5pR Hybrid aspen plasmid lib... 42 0.043
gb|CK103657.1|CK103657 G126P02.5pR Populus tension wood cDN... 42 0.043
gb|CN524570.1|CN524570 GQ015M15.T3_E12 GQ015 Populus tricho... 42 0.043
gb|CV130938.1|CV130938 L1P01h04 Populus stem seasonal libra... 42 0.043
gb|CV241632.1|CV241632 WS02512.B21_M13 PT-MB-N-A-15 Populus... 42 0.043
gb|CV274835.1|CV274835 WS0174.B21.1_I16 PTxD-NR-A-8 Populus... 42 0.043
gb|CX173423.1|CX173423 G06_69-86_14.ab1 leaf inoculated wit... 42 0.043
gb|CX178458.1|CX178458 E10_45-98_10.ab1 leaf inoculated wit... 42 0.043
gb|CX178558.1|CX178558 A08_45-120_02.ab1 leaf inoculated wi... 42 0.043
gb|CX179222.1|CX179222 H04_45-2_16.ab1 leaf inoculated with... 42 0.043
gb|CX179272.1|CX179272 A02_45-120_02.ab1 leaf inoculated wi... 42 0.043
gb|CX181013.1|CX181013 C01_45-32_05.ab1 leaf inoculated wit... 42 0.043
gb|CX186379.1|CX186379 D11_45-7_07.ab1 leaf inoculated with... 42 0.043
gb|BP923955.1|BP923955 BP923955 full-length enriched poplar... 42 0.043
gb|BP925465.1|BP925465 BP925465 full-length enriched poplar... 42 0.043
gb|DT475654.1|DT475654 WS0127.BR_M18 PT-GT-FL-A-3 Populus t... 42 0.043
gb|DV463812.1|DV463812 MTUNUL1.P2.F12 NUL Populus fremontii... 42 0.043
gb|BU791224.1|BU791224 PNI95 Poplar limiting vs. luxuriant ... 40 0.17
gb|CN523944.1|CN523944 GQ015M04.T3_C10 GQ015 Populus tricho... 40 0.17
gb|AJ770400.1|AJ770400 AJ770400 Populus euphratica leaf 3-6... 40 0.17
gb|CV231229.1|CV231229 WS0193.B21_O14 PT-DX-N-A-10 Populus ... 40 0.17
gb|CV254551.1|CV254551 WS0241.B21_I15 PTxD-ICC-N-A-14 Popul... 40 0.17
gb|CV259063.1|CV259063 WS02010.B21_E07 PTxN-IB-N-A-11 Popul... 40 0.17
gb|CV277867.1|CV277867 WS0144.B21_M15 PTxD-IL-A-5 Populus t... 40 0.17
gb|CX185776.1|CX185776 G01_45-28_13.ab1 leaf inoculated wit... 40 0.17
>gb|BU882337.1|BU882337 UM75TF09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 605
Score = 139 bits (70), Expect = 2e-031
Identities = 136/158 (86%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 433 gcacctccatgaccatcaaaaactccaaaaagaccaactatctctccatcaacaccatca 374
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| ||||||| || || ||||||||||| | ||||| || || ||||||||||| |||
Sbjct: 373 attcttgtctcgtaaaaatcttccatggaagatcttttccctggagagcttgcatatcca 314
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | |||||||| ||||| || ||||||||
Sbjct: 313 taactgaatttcccattctgactgagaccaccgccgct 276
>gb|AJ775454.1|AJ775454 AJ775454 Populus euphratica shoot 3-6 months Populus euphratica cDNA
clone P0000300032G01F1, mRNA sequence
Length = 659
Score = 139 bits (70), Expect = 2e-031
Identities = 136/158 (86%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 493 gcacctccatgaccatcaaaaactccaaaaagaccaactatctctccatcaacaccatca 434
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| |||||||||| || ||||||||||| | || || || || ||||||||||| |||
Sbjct: 433 attcttgtctcataaaaatcttccatggaagatctcttccctggagagcttgcatatcca 374
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | |||||||| ||||| ||||| |||||
Sbjct: 373 taactgaattttccattctgactgagaccgccaccgct 336
>gb|CV244561.1|CV244561 WS0254.B21_P23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_P23 3', mRNA sequence
Length = 903
Score = 137 bits (69), Expect = 1e-030
Identities = 207/253 (81%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
|||| ||||| ||||| ||||| | |||||||| ||||| || ||||| || |||||||
Sbjct: 629 caacaacatactgcttcaagagcctatcaccaaatgcacgagagacagctaggacaccac 688
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgct 621
|||| | ||| || || |||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 689 caactctccaagtaccagcccacatgacaaatcctccagcatcttcaatccgttgccgct 748
Query: 622 catcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcata 681
||||||| || || ||||||||||| ||||||||||||||||| || ||| |||||
Sbjct: 749 catcagtctggtctggcttgtgatctcgggaaacagcaatagcattgccaccccggcata 808
Query: 682 tgatagccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcag 741
||| ||| || || || |||||||| ||||| | | ||||||||||||||| | ||| |
Sbjct: 809 tgacagctctggaatctccaacattagcgacaagcaaacgatcaccaacaagaatagctg 868
Query: 742 ttgatgcagttga 754
| || ||||||||
Sbjct: 869 tagaggcagttga 881
Score = 77.8 bits (39), Expect = 8e-013
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| |||||||| | |||||||||||||||||||||||||||
Sbjct: 529 acagcttcctcgtttgtgacaacatcccataacccatcacttgcaaggataagaaactc 587
>gb|CN519649.1|CN519649 GQ0101.B3_G05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0101_G05 5', mRNA sequence
Length = 571
Score = 131 bits (66), Expect = 6e-029
Identities = 135/158 (85%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct: 393 gcacctccatgaccatcaaaaactccaaaaagaccaactatctctccatcaataccatca 334
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| |||||||||| || ||||||||||| | || || || || ||||||||||| |||
Sbjct: 333 attcttgtctcataaaaatcttccatggaagatctcttccctggagagcttgcatatcca 274
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | |||||||| ||||| ||||| |||||
Sbjct: 273 taactgaattttccattctgactgagaccgccaccgct 236
>gb|BP923867.1|BP923867 BP923867 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-024_P09.f 5', mRNA sequence
Length = 518
Score = 131 bits (66), Expect = 6e-029
Identities = 135/158 (85%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 297 gcacctccatgaccatcaaaaactccaaaaagaccaactatctctccatcaacaccatca 238
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| |||||||||| || ||||||||||| | || || || || ||||||||||| |||
Sbjct: 237 attcttgtctcataaaaatcttccatggaagatctcttccctggagagcttgcatatcca 178
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | || ||||| ||||| ||||| |||||
Sbjct: 177 taactgaattttccgttctgactgagaccgccaccgct 140
>gb|DV464049.1|DV464049 MTUNUL1.P22.E06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 821
Score = 131 bits (66), Expect = 6e-029
Identities = 135/158 (85%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct: 429 gcacctccatgaccatcaaaaactccaaaaagaccaactatctctccatcaataccatca 370
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| |||||||||| || ||||||||||| | || || || || ||||||||||| |||
Sbjct: 369 attcttgtctcataaaaatcttccatggaagatctcttccctggagagcttgcatatcca 310
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | |||||||| ||||| ||||| |||||
Sbjct: 309 taactgaattttccattctgactgagaccgccaccgct 272
Score = 109 bits (55), Expect = 2e-022
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 528 tcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatc 587
|||||||| ||||| || |||| || || |||||||| | ||| || |||||||||||
Sbjct: 810 tcaccaaatgcacgggagacaggtaggacgccaccaactctccaagtacctgcccacatg 751
Query: 588 acaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcc 647
||||| ||||||||||||||||| ||||| || |||||||| || || |||||||||||
Sbjct: 750 acaaatcctccagcatcttcaatccgctgtcgttcatcagtctggtctggcttgtgatct 691
Query: 648 tttgaaacagcaatagcatttccttccctgcatatgatagccctagagtcaccaacattt 707
|||||||||||||| || || ||| ||| |||| ||| || || || ||||||||
Sbjct: 690 cgggaaacagcaatagcgttaccaccccggcaaatgacagctctggaatctccaacatta 631
Query: 708 gcgacgaagagacgatcaccaacaagtacagcagttgatgcagttga 754
||||||| | ||||||||||||||| | ||| || || ||||||||
Sbjct: 630 gcgacgagcaaacgatcaccaacaagaatagctgtagaagcagttga 584
>gb|CV234506.1|CV234506 WS01215.B21.1_C17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01215_C17 3', mRNA sequence
Length = 806
Score = 125 bits (63), Expect = 4e-027
Identities = 174/211 (82%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
|||| ||||| ||||| ||||| | |||||||| ||||| || ||||| || |||||||
Sbjct: 585 caacaacatactgcttcaagagcctatcaccaaatgcacgagagacagctaggacaccac 644
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgct 621
|||| | ||| || || |||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 645 caactctccaagtaccagcccacatgacaaatcctccagcatcttcaatccgttgccgct 704
Query: 622 catcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcata 681
||||||| || || ||||||||||| ||||||||||||||||| || ||| |||||
Sbjct: 705 catcagtctggtctggcttgtgatctcgggaaacagcaatagcattgccaccccggcata 764
Query: 682 tgatagccctagagtcaccaacatttgcgac 712
||| ||| || || || |||||||| |||||
Sbjct: 765 tgacagctctggaatctccaacattagcgac 795
Score = 77.8 bits (39), Expect = 8e-013
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| |||||||| | |||||||||||||||||||||||||||
Sbjct: 485 acagcttcctcgtttgtgacaacatcccataacccatcacttgcaaggataagaaactc 543
>gb|CX183225.1|CX183225 D11_45-85_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 633
Score = 123 bits (62), Expect = 1e-026
Identities = 134/158 (84%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| |||||||||||||| |||||||||||||||||||||| ||||||| || ||||
Sbjct: 434 gcacctccatgaccatcaaatactccaaaaagaccaactatctctccatcaataccatca 375
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| |||||||||| || ||||||||||| | || || || || ||||||||||| |||
Sbjct: 374 attcttgtctcataaaaatcttccatggaagatctcttccctggagagcttgcatatcca 315
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | |||||||| ||||| ||||| |||||
Sbjct: 314 taactgaattttccattctgactgagaccgccaccgct 277
>gb|CX186124.1|CX186124 G03_45-36_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 673
Score = 123 bits (62), Expect = 1e-026
Identities = 134/158 (84%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| |||||||||||||| |||||||||||||||||||||| ||||||| || ||||
Sbjct: 417 gcacctccatgaccatcaaatactccaaaaagaccaactatctctccatcaataccatca 358
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| |||||||||| || ||||||||||| | || || || || ||||||||||| |||
Sbjct: 357 attcttgtctcataaaaatcttccatggaagatctcttccctggagagcttgcatatcca 298
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | |||||||| ||||| ||||| |||||
Sbjct: 297 taactgaattttccattctgactgagaccgccaccgct 260
Score = 44.1 bits (22), Expect = 0.011
Identities = 82/102 (80%)
Strand = Plus / Minus
Query: 653 aacagcaatagcatttccttccctgcatatgatagccctagagtcaccaacatttgcgac 712
|||||||||||| || || ||| ||| |||| ||| || || || |||||||| |||||
Sbjct: 673 aacagcaatagcgttaccaccccggcaaatgacagctctggaatctccaacattagcgac 614
Query: 713 gaagagacgatcaccaacaagtacagcagttgatgcagttga 754
|| | ||||||||||||||| | ||| || || ||||||||
Sbjct: 613 gagcaaacgatcaccaacaagaatagctgtagaagcagttga 572
>gb|BU862825.1|BU862825 S020D10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 425
Score = 119 bits (60), Expect = 2e-025
Identities = 129/152 (84%)
Strand = Plus / Minus
Query: 912 ccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaattttt 971
||||||||||||||||||||||||||||||||||||| |||||||||| || ||| ||
Sbjct: 424 ccatgaccatcaaaaactccaaaaagaccaactatctctccatcaacaccgtcgattctt 365
Query: 972 gtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagcta 1031
||||| || || ||||||||||| | ||||| || || ||||||||||| ||||| ||
Sbjct: 364 gtctcgtaaaaatcttccatggaagatcttttccctggagagcttgcatatccataactg 305
Query: 1032 aatctaccattctggctgaggccgccgccgct 1063
||| | |||||||| ||||| || ||||||||
Sbjct: 304 aatttcccattctgactgagaccaccgccgct 273
>gb|DT525965.1|DT525965 WS02046.C21_M05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_M05 3', mRNA sequence
Length = 859
Score = 119 bits (60), Expect = 2e-025
Identities = 216/268 (80%)
Strand = Plus / Plus
Query: 487 ggatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaa 546
||||||| ||||| |||| ||||| ||||| || || | |||||||| ||||| || |
Sbjct: 535 ggatctctggatcagcaacaacatactgcttcaaaagcctatcaccaaatgcacgggaga 594
Query: 547 cagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatctt 606
|||| || || |||||||| | ||| || ||||||||||| ||||| |||||||||||||
Sbjct: 595 cagctaggacgccaccaactctccaagtacctgcccacatgacaaatcctccagcatctt 654
Query: 607 caatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcat 666
|||| ||||| || |||||||| || || ||||||||||| |||||||||||||| |
Sbjct: 655 caatccgctgtcgttcatcagtctggtctggcttgtgatctcgggaaacagcaatagcgt 714
Query: 667 ttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgatcac 726
| || ||| ||| |||| ||| || || || |||||||| ||||||| | ||||||||
Sbjct: 715 taccaccccggcaaatgacagctctggaatctccaacattagcgacgagcaaacgatcac 774
Query: 727 caacaagtacagcagttgatgcagttga 754
||||||| | ||| || || ||||||||
Sbjct: 775 caacaagaatagctgtagaagcagttga 802
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| || ||||| | ||||||||||||||||| ||||||||
Sbjct: 450 acagcttcctcgtttgtgacaacgtcccataatccatcacttgcaaggatgagaaactc 508
>gb|CX177522.1|CX177522 D05_45-64_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 539
Score = 115 bits (58), Expect = 4e-024
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| |||||||||||||| |||||||||||||||||||||| ||||||| || ||||
Sbjct: 406 gcacctccatgaccatcaaatactccaaaaagaccaactatctctccatcaataccatca 347
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| |||||||||| || ||||||||||| | || || || || || |||||||| |||
Sbjct: 346 attcttgtctcataaaaatcttccatggaagatctcttccctggagaccttgcatatcca 287
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | |||||||| ||||| ||||| |||||
Sbjct: 286 taactgaattttccattctgactgagaccgccaccgct 249
>gb|CX179547.1|CX179547 H04_45-86_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 619
Score = 107 bits (54), Expect = 9e-022
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| |||||||||||||| |||||||||||||||||||||| ||||||| || ||||
Sbjct: 424 gcacctccatgaccatcaaatactccaaaaagaccaactatctctccatcaataccatca 365
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
||| |||| ||||| || ||||||| ||| | || || || || ||||||||||| |||
Sbjct: 364 attcttgtgtcataaaaatcttccagggaagatctcttccctggagagcttgcatatcca 305
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | |||||||| ||||| ||||| |||||
Sbjct: 304 taactgaattttccattctgactgagaccgccaccgct 267
>gb|DN493554.1|DN493554 F008P43.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F008P43 5', mRNA sequence
Length = 441
Score = 107 bits (54), Expect = 9e-022
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 906 gcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatca 965
||||| ||||||||||| | |||||||||||||||||||||| ||||||| || ||||
Sbjct: 408 gcacctccatgaccatcttagactccaaaaagaccaactatctctccatcaataccatca 349
Query: 966 atttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagcca 1025
|||||||||||||| || ||||||||||| | || || || || ||||||||||| |||
Sbjct: 348 atttttgtctcataaaaatcttccatggaagatctcttccctggagagcttgcatatcca 289
Query: 1026 tagctaaatctaccattctggctgaggccgccgccgct 1063
|| || ||| | ||||| || ||||| ||||| |||||
Sbjct: 288 taactgaattttccattttgactgagaccgccaccgct 251
>gb|CK096561.1|CK096561 UB19CPA07.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB19CPA07 3', mRNA sequence
Length = 731
Score = 99.6 bits (50), Expect = 2e-019
Identities = 138/166 (83%), Gaps = 1/166 (0%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
|||| ||||| ||||| ||||| | |||||||| ||||| || ||||| || |||||||
Sbjct: 522 caacaacatactgcttcaagagcctatcaccaaatgcacgagagacagctaggacaccac 581
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgct 621
|||| | ||| || || |||||||| ||||| |||| |||||||||||| || |||||||
Sbjct: 582 caactctccaagtaccagcccacatgacaaatcctc-agcatcttcaatccgttgccgct 640
Query: 622 catcagtttgatcaggcttgtgatcctttgaaacagcaatagcatt 667
||||||| || || ||||||||||| |||||||||||||||||
Sbjct: 641 catcagtctggtctggcttgtgatctcgggaaacagcaatagcatt 686
Score = 73.8 bits (37), Expect = 1e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 400 cgacagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaact 459
|||||||||||||||| | ||| |||||||| | |||||||||||||||||||||||||
Sbjct: 420 cgacagcttcctcgtttgtgacaacatcccataaaccatcacttgcaaggataagaaact 479
Query: 460 c 460
|
Sbjct: 480 c 480
>gb|DT477201.1|DT477201 WS02519.BR_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_E12 5', mRNA sequence
Length = 762
Score = 99.6 bits (50), Expect = 2e-019
Identities = 146/178 (82%)
Strand = Plus / Minus
Query: 487 ggatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaa 546
||||||| ||||| |||| ||||| ||||| || || | |||||||| ||||| || |
Sbjct: 185 ggatctctggatcagcaacaacatactgcttcaaaagcctatcaccaaatgcacgggaga 126
Query: 547 cagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatctt 606
|||| || || |||||||| | ||| || ||||||||||| ||||| |||||||||||||
Sbjct: 125 cagctaggacgccaccaactctccaagtacctgcccacatgacaaatcctccagcatctt 66
Query: 607 caatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagc 664
|||| ||||| || |||||||| || || ||||||||||| ||||||||||||||
Sbjct: 65 caatccgctgtcgttcatcagtctggtctggcttgtgatctcgggaaacagcaatagc 8
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| || ||||| | ||||||||||||||||| ||||||||
Sbjct: 270 acagcttcctcgtttgtgacaacgtcccataatccatcacttgcaaggatgagaaactc 212
>gb|DT482237.1|DT482237 WS02519.B21_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_E12 3', mRNA sequence
Length = 762
Score = 99.6 bits (50), Expect = 2e-019
Identities = 146/178 (82%)
Strand = Plus / Plus
Query: 487 ggatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaa 546
||||||| ||||| |||| ||||| ||||| || || | |||||||| ||||| || |
Sbjct: 578 ggatctctggatcagcaacaacatactgcttcaaaagcctatcaccaaatgcacgggaga 637
Query: 547 cagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatctt 606
|||| || || |||||||| | ||| || ||||||||||| ||||| |||||||||||||
Sbjct: 638 cagctaggacgccaccaactctccaagtacctgcccacatgacaaatcctccagcatctt 697
Query: 607 caatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagc 664
|||| ||||| || |||||||| || || ||||||||||| ||||||||||||||
Sbjct: 698 caatccgctgtcgttcatcagtctggtctggcttgtgatctcgggaaacagcaatagc 755
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| || ||||| | ||||||||||||||||| ||||||||
Sbjct: 493 acagcttcctcgtttgtgacaacgtcccataatccatcacttgcaaggatgagaaactc 551
>gb|BU834179.1|BU834179 T057H06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 618
Score = 81.8 bits (41), Expect = 5e-014
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 528 tcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatc 587
|||||||| ||||| || ||||| || || |||||||| | ||| || |||||||||||
Sbjct: 102 tcaccaaatgcacgggagacagctaggacgccaccaactctccaagtacctgcccacatg 43
Query: 588 acaaaacctccagcatcttcaatacgctgccgctcatcagt 628
||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 42 acaaatcctccagcatcttcaatccgctgtcgttcatcagt 2
>gb|DT521622.1|DT521622 WS02034.B21_M15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_M15 3', mRNA sequence
Length = 679
Score = 77.8 bits (39), Expect = 8e-013
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| |||||||| | |||||||||||||||||||||||||||
Sbjct: 487 acagcttcctcgtttgtgacaacatcccataacccatcacttgcaaggataagaaactc 545
Score = 46.1 bits (23), Expect = 0.003
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
|||| ||||| ||||| ||||| | |||||||| ||||| || ||||| || |||||||
Sbjct: 587 caacaacatactgcttcaagagcctatcaccaaatgcacgagagacagctaggacaccac 646
Query: 562 caacgcgccatgttcctgcccacatcacaaa 592
|||| | ||| || || |||||||| |||||
Sbjct: 647 caactctccaagtaccagcccacatgacaaa 677
>gb|BU813276.1|BU813276 N007D06 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 675
Score = 73.8 bits (37), Expect = 1e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 543 gaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagca 602
||||||||||| || ||||| || ||||||||||||||||||| || ||||||||||||
Sbjct: 250 gaaacagcaagcacgccacccactcgccatgttcctgcccacacaacgaaacctccagca 191
Query: 603 tcttc 607
|||||
Sbjct: 190 tcttc 186
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 735 acagcagttgatgcagttgaccca 758
||||||||||| ||||||||||||
Sbjct: 58 acagcagttgacgcagttgaccca 35
>gb|CV238727.1|CV238727 WS0127.B21.1_M18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_M18 3', mRNA sequence
Length = 654
Score = 73.8 bits (37), Expect = 1e-011
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 543 gaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagca 602
||||||||||| || ||||| || ||||||||||||||||||| ||||||||||||||
Sbjct: 562 gaaacagcaagcacgccacccacccgccatgttcctgcccacacaacaaaacctccagcc 621
Query: 603 tcttc 607
|||||
Sbjct: 622 tcttc 626
>gb|CV259669.1|CV259669 WS02011.B21_P11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_P11 3', mRNA sequence
Length = 465
Score = 73.8 bits (37), Expect = 1e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||||||||| ||||||||||| || ||||
Sbjct: 340 caaccacatatggcttaagtagcttatccccaaaagcacgagaaacagcaagcacgccac 399
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 400 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 448
>gb|CV267249.1|CV267249 WS02031.B21_D19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_D19 3', mRNA sequence
Length = 933
Score = 73.8 bits (37), Expect = 1e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||||||||| ||||||||||| || ||||
Sbjct: 497 caaccacatatggcttaagtagcttatccccaaaagcacgagaaacagcaagcacgccac 556
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 557 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 605
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 907 caccaccatgaccatcaaaaactccaaa 934
|||| ||||||||||||||||| |||||
Sbjct: 905 cacctccatgaccatcaaaaacaccaaa 932
>gb|DT517501.1|DT517501 WS02434.B21_H18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_H18 3', mRNA sequence
Length = 939
Score = 73.8 bits (37), Expect = 1e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 531 ccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcaca 590
||||| ||||| ||||||||||| || ||||| || ||||||||||||||||||| ||
Sbjct: 561 ccaaatgcacgagaaacagcaagcacgccacccacccgccatgttcctgcccacacaacg 620
Query: 591 aaacctccagcatcttc 607
||||||||||| |||||
Sbjct: 621 aaacctccagcctcttc 637
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 735 acagcagttgatgcagttgaccca 758
||||||||||| ||||||||||||
Sbjct: 765 acagcagttgacgcagttgaccca 788
>gb|BU819238.1|BU819238 UA41BPD03 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 544
Score = 71.9 bits (36), Expect = 5e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 531 ccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcaca 590
||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| || |
Sbjct: 254 ccaaatgcacgagaaacagcaagcacaccacccacccgccaagttcctgcccatatgatg 195
Query: 591 aaacctccagcatcttcaat 610
||||||||||| ||||||||
Sbjct: 194 aaacctccagcctcttcaat 175
>gb|BU833878.1|BU833878 T053G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 432
Score = 71.9 bits (36), Expect = 5e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 531 ccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcaca 590
||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| || |
Sbjct: 188 ccaaatgcacgagaaacagcaagcacaccacccacccgccaagttcctgcccatatgatg 129
Query: 591 aaacctccagcatcttcaat 610
||||||||||| ||||||||
Sbjct: 128 aaacctccagcctcttcaat 109
>gb|CK093615.1|CK093615 G126P02.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G126P02 3', mRNA sequence
Length = 792
Score = 71.9 bits (36), Expect = 5e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 531 ccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcaca 590
||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| || |
Sbjct: 520 ccaaatgcacgagaaacagcaagcacaccacccacccgccaagttcctgcccatatgatg 579
Query: 591 aaacctccagcatcttcaat 610
||||||||||| ||||||||
Sbjct: 580 aaacctccagcctcttcaat 599
>gb|BI071855.1|BI071855 C065P04U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 338
Score = 69.9 bits (35), Expect = 2e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| |||||||| | ||||||||||||||||||||||||||
Sbjct: 155 acagcttcctcgtttgtgacaacatcccataaaccatcacttgcaaggataagaaactc 97
>gb|CA926310.1|CA926310 MTU6CR.P13.E07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 332
Score = 69.9 bits (35), Expect = 2e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| |||||||| | ||||||||||||||||||||||||||
Sbjct: 162 acagcttcctcgtttgtgacaacatcccataaaccatcacttgcaaggataagaaactc 220
>gb|CA926355.1|CA926355 MTU6CR.P14.A10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 332
Score = 69.9 bits (35), Expect = 2e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| |||||||| | ||||||||||||||||||||||||||
Sbjct: 162 acagcttcctcgtttgtgacaacatcccataaaccatcacttgcaaggataagaaactc 220
>gb|CK106376.1|CK106376 UB19CPA07.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB19CPA07 5', mRNA sequence
Length = 539
Score = 69.9 bits (35), Expect = 2e-010
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 937 gaccaactatctggccatcaacacaatcaatttttgtctcatagaagtcttccatggatg 996
||||||||| || |||||||||| ||| ||| ||||||| || || ||||||||||| |
Sbjct: 475 gaccaactagctctccatcaacaccatcgattcttgtctcgtaaaaatcttccatggaag 416
Query: 997 cccttttaccaggggagcttgcatagccatagctaaatctaccattctggctgaggccgc 1056
||||| || || ||||||||||| ||||| || ||| | |||||||| ||||| || |
Sbjct: 415 atcttttccctggagagcttgcatatccataactgaatttcccattctgactgagaccac 356
Query: 1057 cgccgct 1063
|||||||
Sbjct: 355 cgccgct 349
>gb|BI139312.1|BI139312 F129P19Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 529
Score = 65.9 bits (33), Expect = 3e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||| ||||| ||||||||||| || ||||
Sbjct: 326 caaccacatatggcttaagtagcttatccccaaatgcacgagaaacagcaagcacgccac 385
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 386 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 434
>gb|CV229150.1|CV229150 WS01912.B21_G04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01912_G04 3', mRNA sequence
Length = 723
Score = 65.9 bits (33), Expect = 3e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 543 gaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagca 602
||||||||||| || ||||| || ||||||||||||||||||| || |||||||||||
Sbjct: 619 gaaacagcaagcacgccacccactcgccatgttcctgcccacacaacgaaacctccagcc 678
Query: 603 tcttc 607
|||||
Sbjct: 679 tcttc 683
>gb|CV230922.1|CV230922 WS0193.B21_A05 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_A05 3', mRNA sequence
Length = 838
Score = 65.9 bits (33), Expect = 3e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||| ||||| ||||||||||| || ||||
Sbjct: 505 caaccacatatggcttaagtagcttatccccaaatgcacgagaaacagcaagcacgccac 564
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 565 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 613
>gb|CV239040.1|CV239040 WS0231.B21_C06 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_C06
3', mRNA sequence
Length = 762
Score = 65.9 bits (33), Expect = 3e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||| ||||| ||||||||||| || ||||
Sbjct: 341 caaccacatatggcttaagtagcttatccccaaatgcacgagaaacagcaagcacgccac 400
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 401 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 449
>gb|CV240840.1|CV240840 WS02510.B21_H22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_H22 3', mRNA sequence
Length = 705
Score = 65.9 bits (33), Expect = 3e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||| ||||| ||||||||||| || ||||
Sbjct: 341 caaccacatatggcttaagtagcttatccccaaatgcacgagaaacagcaagcacgccac 400
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 401 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 449
>gb|CV240860.1|CV240860 WS02510.B21_I19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_I19 3', mRNA sequence
Length = 735
Score = 65.9 bits (33), Expect = 3e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||| ||||| ||||||||||| || ||||
Sbjct: 526 caaccacatatggcttaagtagcttatccccaaatgcacgagaaacagcaagcacgccac 585
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 586 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 634
>gb|CV240900.1|CV240900 WS02510.B21_K18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_K18 3', mRNA sequence
Length = 735
Score = 65.9 bits (33), Expect = 3e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||| ||||| ||||||||||| || ||||
Sbjct: 526 caaccacatatggcttaagtagcttatccccaaatgcacgagaaacagcaagcacgccac 585
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 586 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 634
>gb|CV242073.1|CV242073 WS02514.B21.1_A22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_A22 3', mRNA sequence
Length = 889
Score = 65.9 bits (33), Expect = 3e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||| ||||| ||||||||||| || ||||
Sbjct: 501 caaccacatatggcttaagtagcttatccccaaatgcacgagaaacagcaagcacgccac 560
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 561 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 609
>gb|DT505615.1|DT505615 WS01811.C21_G11 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01811_G11 3', mRNA sequence
Length = 897
Score = 65.9 bits (33), Expect = 3e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 543 gaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagca 602
||||||||||| || ||||| || ||||||||||||||||||| || |||||||||||
Sbjct: 636 gaaacagcaagcacgccacccactcgccatgttcctgcccacacaacgaaacctccagcc 695
Query: 603 tcttc 607
|||||
Sbjct: 696 tcttc 700
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 735 acagcagttgatgcagttgaccca 758
||||||||||| ||||||||||||
Sbjct: 828 acagcagttgacgcagttgaccca 851
>gb|DV464474.1|DV464474 MTUNUL1.P28.A06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 813
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 531 ccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcccacatcaca 590
||||| ||||| ||||||||||| || |||| || ||||||||||||||||||| ||
Sbjct: 702 ccaaatgcacgagaaacagcaagcacgccactcacccgccatgttcctgcccacacaacg 643
Query: 591 aaacctccagcatcttc 607
||||||||||| |||||
Sbjct: 642 aaacctccagcctcttc 626
Score = 42.1 bits (21), Expect = 0.043
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttacc 1006
||||||||||||| || |||||||| || ||||||||
Sbjct: 259 ttgtctcatagaaatcctccatggaagctcttttacc 223
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 735 acagcagttgatgcagttgaccca 758
||||||||||| ||||||||||||
Sbjct: 497 acagcagttgacgcagttgaccca 474
>gb|DV466281.1|DV466281 MTUNUL1.P49.E12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 830
Score = 65.9 bits (33), Expect = 3e-009
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 502 caaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccac 561
||||||||||| |||| | || || || ||||| ||||| ||||||||||| || ||||
Sbjct: 760 caaccacatatggcttaagtagcttatccccaaatgcacgagaaacagcaagcacgccac 701
Query: 562 caacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
| || ||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct: 700 ccacccgccaagttcctgcccatatgatgaaacctccagcctcttcaat 652
Score = 42.1 bits (21), Expect = 0.043
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttacc 1006
||||||||||||| || |||||||| || ||||||||
Sbjct: 289 ttgtctcatagaaatcctccatggaagctcttttacc 253
>gb|BU817616.1|BU817616 UA19CPB02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 401
Score = 54.0 bits (27), Expect = 1e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 558 ccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttc 607
||||| || ||||||||||||||||||| || | |||||||||||||||
Sbjct: 396 ccacccactcgccatgttcctgcccacacaacganacctccagcatcttc 347
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 735 acagcagttgatgcagttgaccca 758
||||||||||| ||||||||||||
Sbjct: 219 acagcagttgacgcagttgaccca 196
>gb|CV273062.1|CV273062 WS0171.B21_I15 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_I15 3', mRNA sequence
Length = 585
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| || ||||| | ||||||||||||||||| ||||||||
Sbjct: 465 acagcttcctcgtttgtgacaacgtcccataatccatcacttgcaaggatgagaaactc 523
>gb|BP936722.1|BP936722 BP936722 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-095_L06.r 3', mRNA sequence
Length = 576
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactc 460
|||||||||||||| | ||| || ||||| | ||||||||||||||||| ||||||||
Sbjct: 478 acagcttcctcgtttgtgacaacgtcccataatccatcacttgcaaggatgagaaactc 536
>gb|BP922245.1|BP922245 BP922245 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-005_G11.f 5', mRNA sequence
Length = 548
Score = 52.0 bits (26), Expect = 4e-005
Identities = 83/102 (81%)
Strand = Plus / Minus
Query: 962 atcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcata 1021
||||||| |||||||||| || ||||||||||| | || || || || |||||||||||
Sbjct: 545 atcaattcttgtctcataaaaatcttccatggaagatctcttccctggagagcttgcata 486
Query: 1022 gccatagctaaatctaccattctggctgaggccgccgccgct 1063
||||| || ||| | || ||||| ||||| ||||| |||||
Sbjct: 485 tccataactgaattttccgttctgactgagaccgccaccgct 444
>gb|BU837606.1|BU837606 T103F12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 319
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 531 ccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcct 578
||||| ||||| ||||||||||| |||||||| || ||||| ||||||
Sbjct: 282 ccaaatgcacgagaaacagcaagcacaccacccacccgccaagttcct 235
>gb|AI161911.1|AI161911 A009P42U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 467
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 573 gttcctgcccacatcacaaaacctccagcatcttc 607
||||||||||||| || |||||||||||||||||
Sbjct: 467 gttcctgcccacacaacgaaacctccagcatcttc 433
Score = 44.1 bits (22), Expect = 0.011
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttacc 1006
||||||||||||| || |||||||| || ||||||||
Sbjct: 66 ttgtctcatagaaatcctccatggaagcncttttacc 30
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 735 acagcagttgatgcagttgaccca 758
||||||||||| ||||||||||||
Sbjct: 304 acagcagttgacgcagttgaccca 281
>gb|BU867502.1|BU867502 M101A09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 580
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 420 accacatcccacagcccatcacttgc 445
|||||||||||||| |||||||||||
Sbjct: 359 accacatcccacagtccatcacttgc 334
>gb|CK090877.1|CK090877 F029P39.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F029P39 3', mRNA sequence
Length = 795
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 420 accacatcccacagcccatcacttgc 445
|||||||||||||| |||||||||||
Sbjct: 283 accacatcccacagtccatcacttgc 308
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,103
Number of Sequences: 369679
Number of extensions: 128103
Number of successful extensions: 36966
Number of sequences better than 0.5: 96
Number of HSP's better than 0.5 without gapping: 92
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 36737
Number of HSP's gapped (non-prelim): 220
length of query: 1074
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1055
effective length of database: 196,384,763
effective search space: 207185924965
effective search space used: 207185924965
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)