BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306434.2.3
(3914 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 315 7e-084
gb|CV244615.1|CV244615 WS0255.B21_C09 PT-MB-N-A-15 Populus ... 230 3e-058
gb|DT489371.1|DT489371 WS02542.B21_A18 PT-MB-N-A-15 Populus... 230 3e-058
gb|AY573575.1| Populus tremula x Populus tremuloides cellul... 200 3e-049
gb|AY162180.1| Populus tremuloides cellulose synthase (CesA... 188 1e-045
gb|AF417485.1| Populus tremuloides cellulose synthase (CesA... 141 2e-031
gb|CN523759.1|CN523759 GQ015M04.T3_A09 GQ015 Populus tricho... 139 9e-031
gb|CV275712.1|CV275712 WS0177.B21_F22 PTxD-NR-A-8 Populus t... 129 9e-028
gb|CF237106.1|CF237106 Ptajxtjxt2B1B0103 Poplar cDNA librar... 127 3e-027
gb|BP927588.1|BP927588 BP927588 full-length enriched poplar... 119 9e-025
gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus t... 117 3e-024
gb|DV465848.1|DV465848 MTUNUL1.P43.H11 NUL Populus fremonti... 117 3e-024
gb|DV466748.1|DV466748 MTUNUL1.P9.G02 NUL Populus fremontii... 117 3e-024
gb|AI163338.1|AI163338 A040P09U Hybrid aspen plasmid librar... 113 5e-023
gb|BI131187.1|BI131187 G116P69Y Populus cambium cDNA librar... 113 5e-023
gb|AY573573.2| Populus tremula x Populus tremuloides cellul... 113 5e-023
gb|BU895617.1|BU895617 X028D07 Populus wood cDNA library Po... 109 8e-022
gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA librar... 109 8e-022
gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA librar... 109 8e-022
gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-... 109 8e-022
gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-... 109 8e-022
gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-... 109 8e-022
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 109 8e-022
gb|CN520281.1|CN520281 GQ0105.B3_A14 GQ010 Populus trichoca... 107 3e-021
gb|AF081534.1|AF081534 Populus x canescens cellulose syntha... 107 3e-021
gb|AF527387.1| Populus tremuloides xylem-specific cellulose... 107 3e-021
gb|AY573571.1| Populus tremula x Populus tremuloides cellul... 107 3e-021
gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus ... 105 1e-020
gb|CF235713.1|CF235713 PtaJXT0026B7B0703 Poplar cDNA librar... 103 5e-020
gb|AF072131.1|AF072131 Populus tremuloides secondary xylem ... 101 2e-019
gb|AY573574.1| Populus tremula x Populus tremuloides cellul... 101 2e-019
gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1)... 101 2e-019
gb|AI162302.1|AI162302 A015P47U Hybrid aspen plasmid librar... 100 8e-019
gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA librar... 98 3e-018
gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA libra... 98 3e-018
gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDN... 98 3e-018
gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium ... 98 3e-018
gb|CF236447.1|CF236447 PtaJXT2H2H0216 Poplar cDNA library f... 92 2e-016
gb|BI127228.1|BI127228 G057P27Y Populus cambium cDNA librar... 90 8e-016
gb|CA926289.1|CA926289 MTU6CR.P13.C05 Aspen root cDNA Libra... 90 8e-016
gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichoca... 90 8e-016
gb|CX169886.1|CX169886 G10_69-94_14.ab1 leaf inoculated wit... 90 8e-016
gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus... 90 8e-016
gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Po... 88 3e-015
gb|AJ778476.1|AJ778476 AJ778476 Populus euphratica cambium ... 88 3e-015
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 88 3e-015
gb|CK319325.1|CK319325 X9P09e02 Populus stem seasonal libra... 86 1e-014
gb|AY573572.1| Populus tremula x Populus tremuloides cellul... 86 1e-014
gb|CV228438.1|CV228438 WS01910.B21_B15 PT-DX-N-A-10 Populus... 82 2e-013
gb|AY055724.2| Populus tremuloides cellulose synthase (CesA... 82 2e-013
gb|CA931952.1|CA931952 MTU4TA.P25.A10 Aspen apex cDNA Libra... 80 7e-013
gb|CA932078.1|CA932078 MTU4TA.P26.F03 Aspen apex cDNA Libra... 80 7e-013
gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal libr... 80 7e-013
gb|AY330166.1| Populus tremuloides CesA7A-like mRNA, partia... 78 3e-012
gb|CF229078.1|CF229078 PtaXM0021A1A0101 Poplar cDNA library... 76 1e-011
gb|CF232701.1|CF232701 PtaJXO0014G1G0113 Poplar cDNA librar... 76 1e-011
gb|CK116718.1|CK116718 B016P26 Hybrid aspen plasmid library... 76 1e-011
gb|CK318831.1|CK318831 X9P03h01 Populus stem seasonal libra... 76 1e-011
gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cD... 74 5e-011
gb|CA934196.1|CA934196 MTU3TS.P4.D08 Aspen stem cDNA Librar... 74 5e-011
gb|CF232837.1|CF232837 PtaJXO0016D5D0507 Poplar cDNA librar... 74 5e-011
gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA libra... 74 5e-011
gb|CK102299.1|CK102299 G072P58.5pR Populus tension wood cDN... 74 5e-011
gb|CK107777.1|CK107777 G057P27 Populus tension wood cDNA li... 74 5e-011
gb|AJ771596.1|AJ771596 AJ771596 Populus euphratica root 3-6... 74 5e-011
gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6... 74 5e-011
gb|BU897991.1|BU897991 X073A11 Populus wood cDNA library Po... 72 2e-010
gb|CA930801.1|CA930801 MTU2TA.P10.D08 Aspen apex cDNA Libra... 72 2e-010
gb|AY330165.1| Populus tremuloides CesA5A-like mRNA, partia... 72 2e-010
gb|CF227669.1|CF227669 PtaXM0003A12A1202 Poplar cDNA librar... 70 7e-010
gb|CF229283.1|CF229283 PtaXM0023E4E0410 Poplar cDNA library... 70 7e-010
gb|DT469902.1|DT469902 WS01919.C21_E06 PT-DX-N-A-10 Populus... 70 7e-010
gb|CK098592.1|CK098592 A020P56.5pR Hybrid aspen plasmid lib... 66 1e-008
gb|CK117417.1|CK117417 B050P68 Hybrid aspen plasmid library... 66 1e-008
gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6... 66 1e-008
gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6... 66 1e-008
gb|DT493580.1|DT493580 WS0111.BR_M17 PT-P-FL-A-2 Populus tr... 66 1e-008
gb|CA926496.1|CA926496 MTU6CR.P15.F11 Aspen root cDNA Libra... 64 4e-008
gb|CA926817.1|CA926817 MTU6CR.P1.E04 Aspen root cDNA Librar... 64 4e-008
gb|CF235639.1|CF235639 PtaJXT0025C12C1206 Poplar cDNA libra... 64 4e-008
gb|CN524693.1|CN524693 GQ015M08.T3_H02 GQ015 Populus tricho... 64 4e-008
gb|CK320732.1|CK320732 X9SP01b11 Populus stem seasonal libr... 64 4e-008
gb|DT476519.1|DT476519 WS01229.B21_N17 PT-GT-FL-A-3 Populus... 64 4e-008
gb|DT509821.1|DT509821 WS02424.BR_N10 PTxD-ICC-N-A-14 Popul... 64 4e-008
gb|AJ777820.1|AJ777820 AJ777820 Populus euphratica root 3-6... 62 2e-007
gb|CV234604.1|CV234604 WS01215.B21.1_I11 PT-GT-FL-A-3 Popul... 62 2e-007
gb|CF233490.1|CF233490 PtaJXO0024C12C1206 Poplar cDNA libra... 60 7e-007
gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium... 60 7e-007
gb|BI132326.1|BI132326 G135P19Y Populus cambium cDNA librar... 58 3e-006
gb|CN549808.1|CN549808 GQ0241.B3_H11 GQ024 Populus trichoca... 58 3e-006
gb|DT500162.1|DT500162 PX0011.BR_G15 PT-X-FL-A-1 Populus tr... 58 3e-006
gb|CK087778.1|CK087778 A020P56.3pR Hybrid aspen plasmid lib... 56 1e-005
gb|AJ778868.1|AJ778868 AJ778868 Populus euphratica cambium ... 56 1e-005
gb|BP924070.1|BP924070 BP924070 full-length enriched poplar... 56 1e-005
gb|BI128968.1|BI128968 G084P20Y Populus cambium cDNA librar... 54 4e-005
gb|CA927446.1|CA927446 MTU6CR.P9.B04 Aspen root cDNA Librar... 54 4e-005
gb|CK100621.1|CK100621 C057P32.5pR Populus strain T89 leave... 54 4e-005
gb|BP923622.1|BP923622 BP923622 full-length enriched poplar... 54 4e-005
gb|BI131891.1|BI131891 G127P18Y Populus cambium cDNA librar... 50 7e-004
gb|BI138973.1|BI138973 F120P33Y Populus flower cDNA library... 50 7e-004
gb|CK091716.1|CK091716 F120P33.3pR Populus flower cDNA libr... 50 7e-004
gb|CK101805.1|CK101805 F120P33.5pR Populus flower cDNA libr... 50 7e-004
gb|CV234217.1|CV234217 WS01214.B21_B13 PT-GT-FL-A-3 Populus... 50 7e-004
gb|CV235270.1|CV235270 WS01218.B21_H07 PT-GT-FL-A-3 Populus... 50 7e-004
gb|CV238245.1|CV238245 WS0125.B21_N16 PT-GT-FL-A-3 Populus ... 50 7e-004
gb|CV238311.1|CV238311 WS0126.B21_C03 PT-GT-FL-A-3 Populus ... 50 7e-004
gb|DT475055.1|DT475055 WS0125.BR_N16 PT-GT-FL-A-3 Populus t... 50 7e-004
gb|DT507297.1|DT507297 WS02417.BR_O04 PTxD-ICC-N-A-14 Popul... 50 7e-004
gb|CF227502.1|CF227502 PtaD6G2G0214 Poplar cDNA library fro... 48 0.003
gb|CK102947.1|CK102947 G097P01.5pR Populus tension wood cDN... 48 0.003
gb|CN519879.1|CN519879 GQ0108.B3_I06 GQ010 Populus trichoca... 48 0.003
gb|BP923939.1|BP923939 BP923939 full-length enriched poplar... 48 0.003
gb|AF417487.1| Populus tremuloides cellulose synthase-like ... 48 0.003
gb|AY162184.1| Populus tremuloides cellulose synthase-like ... 48 0.003
gb|CB239511.1|CB239511 RSH12F10 two-month-old roots from cl... 46 0.010
gb|CK317759.1|CK317759 B9P01d09 Populus stem seasonal libra... 46 0.010
gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus... 46 0.010
gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus tr... 46 0.010
gb|BI129538.1|BI129538 G092P15Y Populus cambium cDNA librar... 44 0.040
gb|BI129778.1|BI129778 G095P49Y Populus cambium cDNA librar... 44 0.040
gb|BU897151.1|BU897151 X052C02 Populus wood cDNA library Po... 44 0.040
gb|CV283069.1|CV283069 WS0186.B21_F15 PTxD-IL-N-A-9 Populus... 44 0.040
gb|DT470299.1|DT470299 WS01920.C21_H07 PT-DX-N-A-10 Populus... 44 0.040
gb|AI164498.1|AI164498 A062p21u Hybrid aspen plasmid librar... 42 0.16
gb|BU819566.1|BU819566 UA45BPA06 Populus tremula cambium cD... 42 0.16
gb|BU821438.1|BU821438 UB23CPB05 Populus tremula cambium cD... 42 0.16
gb|BU832039.1|BU832039 T028G03 Populus apical shoot cDNA li... 42 0.16
gb|BU833815.1|BU833815 T052H02 Populus apical shoot cDNA li... 42 0.16
gb|BU833894.1|BU833894 T054A06 Populus apical shoot cDNA li... 42 0.16
gb|BU837379.1|BU837379 T101B08 Populus apical shoot cDNA li... 42 0.16
gb|BU886068.1|BU886068 R040A02 Populus root cDNA library Po... 42 0.16
gb|BU886619.1|BU886619 R048C06 Populus root cDNA library Po... 42 0.16
gb|CF230124.1|CF230124 PtaC0004B2B0204 Poplar cDNA library ... 42 0.16
gb|CK087732.1|CK087732 A019P25.3pR Hybrid aspen plasmid lib... 42 0.16
gb|CN549469.1|CN549469 GQ0241.B3_B20 GQ024 Populus trichoca... 42 0.16
gb|CN549660.1|CN549660 GQ0243.B3_H08 GQ024 Populus trichoca... 42 0.16
gb|CK319442.1|CK319442 X9P10g11 Populus stem seasonal libra... 42 0.16
gb|CV273266.1|CV273266 WS01710.B21_E12 PTxD-NR-A-8 Populus ... 42 0.16
gb|CV275252.1|CV275252 WS0175.B21_N18 PTxD-NR-A-8 Populus t... 42 0.16
gb|CX167765.1|CX167765 D02_69-4_08.ab1 leaf inoculated with... 42 0.16
gb|CX167803.1|CX167803 G05_69-98_13.ab1 leaf inoculated wit... 42 0.16
gb|CX169463.1|CX169463 E09_69-41_09.ab1 leaf inoculated wit... 42 0.16
gb|CX169792.1|CX169792 A01_69-12_01.ab1 leaf inoculated wit... 42 0.16
gb|CX170539.1|CX170539 C04_69-3_06.ab1 leaf inoculated with... 42 0.16
gb|CX171856.1|CX171856 E02_69-85_10.ab1 leaf inoculated wit... 42 0.16
gb|CX171907.1|CX171907 C03_69-43_05.ab1 leaf inoculated wit... 42 0.16
gb|DN484949.1|DN484949 K041P22.3pR Populus apical shoot cDN... 42 0.16
gb|DN493622.1|DN493622 G071P10.5pR Populus tension wood cDN... 42 0.16
gb|DN500125.1|DN500125 UB46DPG01.5pR Populus active cambium... 42 0.16
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 315 bits (159), Expect = 7e-084
Identities = 489/599 (81%)
Strand = Plus / Minus
Query: 1692 gcaccacttgggccagcagttgcaagttcttgatggtggcttctttgttttaggagcatc 1751
||||||||| ||| |||||||||| || || | |||||| ||||||||||| ||||||||
Sbjct: 2065 gcaccacttaggcaagcagttgcatgtcctcgttggtggtttctttgtttttggagcatc 2006
Query: 1752 ataaccatatagtgcctgccgtctgaaaacacatccagtacccacataaatgggcccttg 1811
||||||||| || || | || |||||||||||||||||| || ||||| || || |||||
Sbjct: 2005 ataaccataaagcgcgtaccttctgaaaacacatccagtcccgacatatataggtccttg 1946
Query: 1812 aataccatccaaacctttcatgttgatatcaaaaaagacaacgttcctgttagcatatcg 1871
||| ||||| |||||| |||| ||||||||||| || ||| |||| ||| ||||||||
Sbjct: 1945 aatgccatctaaacctctcatattgatatcaaagaatacagtattccggttggcatatcg 1886
Query: 1872 atcatgacggtcaataccaccaaacctctgagggaactgtacatagcacactttcttccc 1931
|||| | |||||| ||| |||||||||| |||||||| |||||||||||| |||||||
Sbjct: 1885 atcactcctgtcaatgccatcaaacctctgtgggaactggacatagcacactctcttccc 1826
Query: 1932 caccaaaggatccatcatgaaacacatagcctcttttatggccttgctattgttgatgta 1991
| ||| |||||||||||||||||||| || ||| | | ||||| || || ||||||||
Sbjct: 1825 aagcaatggatccatcatgaaacacattgcttctctaagagccttactgttattgatgta 1766
Query: 1992 gtgatcacagtccaagttcaataggtatgcagcatttgataagacagcagagacacggac 2051
||||||||| ||||| ||||| || |||| |||||||| || || |||||||| | |||
Sbjct: 1765 gtgatcacaatccaaattcaaaagatatggagcatttgttagcacggcagagactctgac 1706
Query: 2052 cagtgcattcatggcaccagccttcttgtgatggttataacctggcctcttttctctcga 2111
|| |||||||| || |||||||| ||||| || ||| | || || ||||||||||| ||
Sbjct: 1705 caaagcattcatagctccagcctttttgtggtgattaaatccaggtctcttttctctgga 1646
Query: 2112 gacataaacaaggcgaggcaactcatttccttccacatcacgaccaccactttggccaag 2171
||||| || || || || || || ||||| || ||| | || ||||||||||||||
Sbjct: 1645 aacatataccagacgtggtaattcgtttccatcagtgtcatgccctccactttggccaag 1586
Query: 2172 gaatacctgaatcattccaggatgatcgcgtacgttgtttccaggccaggggcttccatc 2231
||| ||||||||||||||||| ||||| || || || || |||||||| || | |||||
Sbjct: 1585 gaaaacctgaatcattccagggtgatcacggacattattcccaggccatggagtaccatc 1526
Query: 2232 ttgcattgtccatccttcctcaggaaccttttgggcttttgcaaccaaggcattgatcc 2290
|||||||||||||| || || || ||||| || || || |||||||| ||||||||||
Sbjct: 1525 ctgcattgtccatccatcttctgggaccttatgagccttggcaaccaaagcattgatcc 1467
Score = 119 bits (60), Expect = 9e-025
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 2437 acccatttctttgcaaattcagatgtttcagacaatgcttcaaacgtaagcattgcagca 2496
||||||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||||
Sbjct: 1320 acccatttctttgcaaattcagatgtttctgacaatgcctcaaatgtcagcatagcagca 1261
Query: 2497 ccatcatcagaaacatagcaggagaccttctcaaccggataatc 2540
||||||||||||||||| || || ||||| ||||| || |||||
Sbjct: 1260 ccatcatcagaaacataacatgaaaccttgtcaacagggtaatc 1217
Score = 99.6 bits (50), Expect = 8e-019
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 2704 agccactttgggaactgatcaagaatccaggacatcgcaaaccagatttcacagattaca 2763
|||||||||||||| |||||||||||||| || | |||||||| || |||||||| |||
Sbjct: 1053 agccactttgggaattgatcaagaatccatgaaacggcaaaccaaatctcacagatcaca 994
Query: 2764 gatatgagccacaatgcaaatgcatctttcgccggatgcatcactcggtagtggaagaag 2823
||||| ||||| || ||||||||||| ||| | ||||| | ||||| ||||||||||||
Sbjct: 993 gatataagccataaagcaaatgcatcattcacaggatgtgtgactcgatagtggaagaag 934
Query: 2824 aa 2825
||
Sbjct: 933 aa 932
Score = 75.8 bits (38), Expect = 1e-011
Identities = 164/206 (79%)
Strand = Plus / Minus
Query: 733 gtggtccacttgaacgtgtacagctccgagaactcctcgtcgtccccggccttcgacgtc 792
||||||||||| || | ||||||||| |||||||| |||||||| || | || |||||
Sbjct: 3012 gtggtccacttaaatgcgtacagctctgagaactcgtcgtcgtctcctcctttagacgta 2953
Query: 793 acggtgaagctcgtgtcgatgccggcgagcaccttcagcaggccctggaacaccgcgaac 852
|| |||||| |||| || | || || || ||||| | || ||||||||||| || ||
Sbjct: 2952 acagtgaagttcgtatcaacaccagctagaacctttaaaagcccctggaacactgcaaat 2893
Query: 853 agatgcgccgaaacgcctccgatgacccagaactgctcgttcctccaccagtcgtcgatg 912
||||| || || || |||||||| |||||||| || ||||| |||||||| ||||| ||
Sbjct: 2892 agatgtgctgatacccctccgatcacccagaattgttcgtttctccaccactcgtcaata 2833
Query: 913 gccacgccactccacctcatttccag 938
| || |||||||| |||||||||||
Sbjct: 2832 ccaaccccactccatctcatttccag 2807
Score = 69.9 bits (35), Expect = 7e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 2995 tcctgcttctgcttccagccctccattctctccttccaggccacgctgccatatccgtag 3054
||||| || |||||||||| |||||| ||||||||||| || | || |||||||| ||
Sbjct: 765 tcctgtttttgcttccagctctccatcctctccttccatgcaatacttccatatccataa 706
Query: 3055 gcggccagatccttggacgggtccatggatctcggttgcactggaag 3101
|| |||| |||||||| || ||||||||||| |||||||| |||||
Sbjct: 705 gcagccaagtccttggaaggatccatggatcttggttgcacaggaag 659
Score = 63.9 bits (32), Expect = 4e-008
Identities = 176/224 (78%)
Strand = Plus / Minus
Query: 1186 ccaagggcccagcgaaggacctggtgaagacggtcggaaaggttcagaggcgcagaacct 1245
||||| ||||| | |||||||||||| ||||| || ||||| || | ||||| ||||||
Sbjct: 2559 ccaagagcccatctaaggacctggtgtagacgatcagaaagattaatgggcgccgaacct 2500
Query: 1246 ttgaatgcaggccgcttcgggatgcagtaaatagaccgccagccatggcagtgcatctta 1305
|| ||||| |||| || || ||||| || || | ||| ||||| |||||||| |||
Sbjct: 2499 ttaaatgctggcctagaaggaatacagtatattgatctccatccatgacagtgcatttta 2440
Query: 1306 aatccagtcaagatatcctctgtgatcgatccataaatccagccaatctcttttccccag 1365
|| || ||||| ||||||||||| | || ||||||||||| || | |||||| |||||
Sbjct: 2439 aagcctgtcaatatatcctctgtaacagaaccataaatccaccctacctctttgccccat 2380
Query: 1366 tcggtcttgtcttcgtagccgcagctgataacatgtatagcttc 1409
|| || || ||||| ||||| ||||| || ||||| || |||||
Sbjct: 2379 tctgttttatcttcatagccacagctaatgacatggatggcttc 2336
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3504 ggggaaggcgcactcgttgcacgccac 3530
||||||||||||||||||||| |||||
Sbjct: 256 ggggaaggcgcactcgttgcaggccac 230
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 589 aggtggacgatcacccagaaggcgaagaagagcttcccgaacagggggccccacgactcg 648
||||| || ||||||||||| || ||||| ||||| || ||||| || ||||| |||||
Sbjct: 3156 aggtgaactatcacccagaatgcaaagaaaagcttaccaaacagaggcccccatgactca 3097
Query: 649 taccc 653
|||||
Sbjct: 3096 taccc 3092
>gb|CV244615.1|CV244615 WS0255.B21_C09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_C09
3', mRNA sequence
Length = 402
Score = 230 bits (116), Expect = 3e-058
Identities = 269/320 (84%)
Strand = Plus / Minus
Query: 1692 gcaccacttgggccagcagttgcaagttcttgatggtggcttctttgttttaggagcatc 1751
||||||||| ||| |||||||||| || || | |||||| ||||||||||| ||||||||
Sbjct: 320 gcaccacttaggcaagcagttgcatgtcctcgttggtggtttctttgtttttggagcatc 261
Query: 1752 ataaccatatagtgcctgccgtctgaaaacacatccagtacccacataaatgggcccttg 1811
||||||||| || || |||| |||||||||||||||||| || ||||| || || |||||
Sbjct: 260 ataaccataaagcgcgtgccttctgaaaacacatccagtcccgacatatataggtccttg 201
Query: 1812 aataccatccaaacctttcatgttgatatcaaaaaagacaacgttcctgttagcatatcg 1871
||| |||||||||||| |||| ||||||||||| || ||| ||||| ||| ||||||||
Sbjct: 200 aatgccatccaaacctctcatattgatatcaaagaatacagtgttccggttggcatatcg 141
Query: 1872 atcatgacggtcaataccaccaaacctctgagggaactgtacatagcacactttcttccc 1931
|||| | |||||| ||| |||||||||| |||||||| |||||||||||| |||| ||
Sbjct: 140 atcactcctgtcaatgccatcaaacctctgtgggaactggacatagcacactctctttcc 81
Query: 1932 caccaaaggatccatcatgaaacacatagcctcttttatggccttgctattgttgatgta 1991
| || |||||||||||||||||||| || ||| | | ||||| || || ||||||||
Sbjct: 80 aagtaatggatccatcatgaaacacattgcttctctaagagccttactgttattgatgta 21
Query: 1992 gtgatcacagtccaagttca 2011
||||||||| ||||| ||||
Sbjct: 20 gtgatcacaatccaaattca 1
>gb|DT489371.1|DT489371 WS02542.B21_A18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_A18 3', mRNA sequence
Length = 402
Score = 230 bits (116), Expect = 3e-058
Identities = 269/320 (84%)
Strand = Plus / Minus
Query: 1692 gcaccacttgggccagcagttgcaagttcttgatggtggcttctttgttttaggagcatc 1751
||||||||| ||| |||||||||| || || | |||||| ||||||||||| ||||||||
Sbjct: 320 gcaccacttaggcaagcagttgcatgtcctcgttggtggtttctttgtttttggagcatc 261
Query: 1752 ataaccatatagtgcctgccgtctgaaaacacatccagtacccacataaatgggcccttg 1811
||||||||| || || |||| |||||||||||||||||| || ||||| || || |||||
Sbjct: 260 ataaccataaagcgcgtgccttctgaaaacacatccagtcccgacatatataggtccttg 201
Query: 1812 aataccatccaaacctttcatgttgatatcaaaaaagacaacgttcctgttagcatatcg 1871
||| |||||||||||| |||| ||||||||||| || ||| ||||| ||| ||||||||
Sbjct: 200 aatgccatccaaacctctcatattgatatcaaagaatacagtgttccggttggcatatcg 141
Query: 1872 atcatgacggtcaataccaccaaacctctgagggaactgtacatagcacactttcttccc 1931
|||| | |||||| ||| |||||||||| |||||||| |||||||||||| |||| ||
Sbjct: 140 atcactcctgtcaatgccatcaaacctctgtgggaactggacatagcacactctctttcc 81
Query: 1932 caccaaaggatccatcatgaaacacatagcctcttttatggccttgctattgttgatgta 1991
| || |||||||||||||||||||| || ||| | | ||||| || || ||||||||
Sbjct: 80 aagtaatggatccatcatgaaacacattgcttctctaagagccttactgttattgatgta 21
Query: 1992 gtgatcacagtccaagttca 2011
||||||||| ||||| ||||
Sbjct: 20 gtgatcacaatccaaattca 1
>gb|AY573575.1| Populus tremula x Populus tremuloides cellulose synthase (CesA4)
mRNA, complete cds
Length = 3778
Score = 200 bits (101), Expect = 3e-049
Identities = 677/869 (77%)
Strand = Plus / Minus
Query: 1747 gcatcataaccatatagtgcctgccgtctgaaaacacatccagtacccacataaatgggc 1806
|||||||||||||| ||||| |||| | |||||||| ||||| || ||||| || ||
Sbjct: 2183 gcatcataaccataaagtgcttgcctccgaaaaacacacccagttccaacatatattggt 2124
Query: 1807 ccttgaataccatccaaacctttcatgttgatatcaaaaaagacaacgttcctgttagca 1866
||||| | |||||| || |||||||| || |||||||| || |||||||| | || |
Sbjct: 2123 ccttgtaaaccatctaatcctttcatatttatatcaaagaatacaacgtttcgattcgag 2064
Query: 1867 tatcgatcatgacggtcaataccaccaaacctctgagggaactgtacatagcacactttc 1926
|||| ||||||||| ||||| ||| |||| | ||||| ||||| ||||| || |||||
Sbjct: 2063 tatctatcatgacgatcaatgccatcaaatcgttgaggaaactgcacataacaaactttt 2004
Query: 1927 ttccccaccaaaggatccatcatgaaacacatagcctcttttatggccttgctattgttg 1986
||||| |||||||||||||||||||| || ||| | | || |||||||||||
Sbjct: 2003 ttccctgatgttggatccatcatgaaacacatggcttctctaagtgctttgctattgtta 1944
Query: 1987 atgtagtgatcacagtccaagttcaataggtatgcagcatttgataagacagcagagaca 2046
|| || || ||||| || | |||| || || | |||||||| | || ||||||||
Sbjct: 1943 atatattggtcacaatcaacattcagaagataaggggcatttgacagaactgcagagacc 1884
Query: 2047 cggaccagtgcattcatggcaccagccttcttgtgatggttataacctggcctcttttct 2106
|| | ||||| ||||||||| ||||||||||| || || | |||| | ||||| ||
Sbjct: 1883 cgcatcagtgaattcatggccccagccttcttatggtgtgtcgaaccctgtctcttctca 1824
Query: 2107 ctcgagacataaacaaggcgaggcaactcatttccttccacatcacgaccaccactttgg 2166
| || |||||||| || ||||| ||||| ||||||||| |||||| | ||||||||
Sbjct: 1823 cgagaaacataaaccagacgaggtaactcgcatccttccacgtcacgaactccactttga 1764
Query: 2167 ccaaggaatacctgaatcattccaggatgatcgcgtacgttgtttccaggccaggggctt 2226
|||||||| ||||| ||||| |||||||| || ||||| |||||||||||||| || ||
Sbjct: 1763 ccaaggaaaacctggatcatgccaggatggtctcgtacattgtttccaggccatggagtt 1704
Query: 2227 ccatcttgcattgtccatccttcctcaggaaccttttgggcttttgcaaccaaggcattg 2286
||||||||||||||||| || || || ||||||||||| ||| | | |||||| ||||
Sbjct: 1703 ccatcttgcattgtccaaccatcttccggaaccttttgcgctgtggaaaccaacccattt 1644
Query: 2287 atccttaccttgaattcctcgtattctctcttcatcgccctcctctccctaacaaatgaa 2346
||||| || ||||| || || |||||||||||||| || | ||| ||||| |||||||
Sbjct: 1643 atcctcactttgaactcttcatattctctcttcatggcacgcctttccctgacaaatgct 1584
Query: 2347 gcagcaaccttgtctttcaggtagtctatcttctgttggaagtaccactcaggagcacga 2406
| | ||| || | ||||| ||||| |||||||| || ||||||||||| |||||
Sbjct: 1583 ggatgaactttatttttcaaatagtcaatcttctgagaaaaataccactcaggggcacgg 1524
Query: 2407 ggctcgatattaaactttttgctgaaaggaacccatttctttgcaaattcagatgtttca 2466
|||||||| ||||| || |||| || |||||||| ||| | ||||||||||| || ||
Sbjct: 1523 ggctcgatgttaaatttcttgcaaaatggaacccacttcctagcaaattcagacgtctcg 1464
Query: 2467 gacaatgcttcaaacgtaagcattgcagcaccatcatcagaaacatagcaggagaccttc 2526
|| | |||||||| |||||||| || |||||||| || || |||||||| | || ||
Sbjct: 1463 gagagagcttcaaatgtaagcatggcggcaccatcgtctgacacatagcatgcaacttta 1404
Query: 2527 tcaaccggataatccacagaaaggatggaaaggacagtgttcgctgtgaccaagggaggt 2586
|| || |||||||| || | || || || || ||||||||||| |||| || ||||||
Sbjct: 1403 tccacaggataatcaaccgcgagaatagagagtacagtgttcgcagtgatcagcggaggt 1344
Query: 2587 tcctttgtgggatcaaccgtactgacaaa 2615
|| || | |||||||||||||| |||||
Sbjct: 1343 tctttcataggatcaaccgtacttacaaa 1315
Score = 163 bits (82), Expect = 6e-038
Identities = 211/254 (83%)
Strand = Plus / Minus
Query: 1144 taccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagcgaagg 1203
||||||| ||| ||||| | ||||||||||| || ||||| || |||||||| |||||
Sbjct: 2765 taccaaattggacagtgtctactgaagaaaatctcaacagaaccgagggcccaccgaaga 2706
Query: 1204 acctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggccgcttc 1263
|||||||| ||||| || || ||||| | || || || || |||||||||||||||||
Sbjct: 2705 acctggtgtagacgatctgacaggttaattggagctgaccccttgaatgcaggccgctta 2646
Query: 1264 gggatgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaagatatcc 1323
|| |||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 2645 ggtatgcagtaaacagaccgccatccatggcagtgcatcttgaatcctgtcaagatatcc 2586
Query: 1324 tctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgtcttcgtag 1383
||||| | || ||||| |||||||||| || |||||||| || || || ||||| ||
Sbjct: 2585 tctgtaacagagccatatatccagccaacttcctttccccattctgttttatcttcataa 2526
Query: 1384 ccgcagctgataac 1397
|| |||||||||||
Sbjct: 2525 ccacagctgataac 2512
>gb|AY162180.1| Populus tremuloides cellulose synthase (CesA7) mRNA, complete cds
Length = 3809
Score = 188 bits (95), Expect = 1e-045
Identities = 383/479 (79%)
Strand = Plus / Minus
Query: 2038 gcagagacacggaccagtgcattcatggcaccagccttcttgtgatggttataacctggc 2097
|||||||| || | ||||| ||||||||| ||||||||||| || || | | |||||
Sbjct: 1858 gcagagacccgcatcagtgaattcatggccccagccttcttatggtgttcgaaccctggt 1799
Query: 2098 ctcttttctctcgagacataaacaaggcgaggcaactcatttccttccacatcacgacca 2157
||||| || | || |||||||| || ||||| ||||| ||||||||| ||||| |
Sbjct: 1798 ctcttctcacgagaaacataaaccagacgaggtaactcgcatccttccacgtcacgtact 1739
Query: 2158 ccactttggccaaggaatacctgaatcattccaggatgatcgcgtacgttgtttccaggc 2217
|||||||| |||||||| ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 1738 ccactttgaccaaggaaaacctgaatcatgccaggatggtctcgtacattgtttccaggc 1679
Query: 2218 caggggcttccatcttgcattgtccatccttcctcaggaaccttttgggcttttgcaacc 2277
|| || ||||||||||||||||||| || || || ||||||||||| ||| | | ||||
Sbjct: 1678 catggagttccatcttgcattgtccaaccatcttccggaaccttttgtgctgtggaaacc 1619
Query: 2278 aaggcattgatccttaccttgaattcctcgtattctctcttcatcgccctcctctcccta 2337
|| |||| ||||| || |||||||| || |||||||||||||| || | ||| |||||
Sbjct: 1618 aacccatttatcctcactttgaattcttcatattctctcttcatggcacgcctttccctg 1559
Query: 2338 acaaatgaagcagcaaccttgtctttcaggtagtctatcttctgttggaagtaccactca 2397
||||||| | | ||| || | ||||| ||||| |||||||| || |||||||||
Sbjct: 1558 acaaatgctggatgaactttatttttcaaatagtcaatcttctgagaaaaataccactca 1499
Query: 2398 ggagcacgaggctcgatattaaactttttgctgaaaggaacccatttctttgcaaattca 2457
|| ||||| |||||||| ||||| || |||| || |||||||| ||| | |||||||||
Sbjct: 1498 ggggcacggggctcgatgttaaatttcttgcaaaatggaacccacttcctagcaaattca 1439
Query: 2458 gatgtttcagacaatgcttcaaacgtaagcattgcagcaccatcatcagaaacatagca 2516
|| || || || | |||||||| |||||||| || |||||||| || || ||||||||
Sbjct: 1438 gacgtctcggagagagcttcaaatgtaagcatggcggcaccatcgtctgacacatagca 1380
Score = 163 bits (82), Expect = 6e-038
Identities = 211/254 (83%)
Strand = Plus / Minus
Query: 1144 taccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagcgaagg 1203
||||||| ||| ||||| | ||||||||||| || ||||| || |||||||| |||||
Sbjct: 2731 taccaaattggacagtgtctactgaagaaaatctcaacagaaccgagggcccaccgaaga 2672
Query: 1204 acctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggccgcttc 1263
|||||||| ||||| || || ||||| | || || || || |||||||||||||||||
Sbjct: 2671 acctggtgtagacgatctgacaggttaattggagctgaccccttgaatgcaggccgctta 2612
Query: 1264 gggatgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaagatatcc 1323
|| |||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 2611 ggtatgcagtaaacagaccgccatccatggcagtgcatcttgaatcctgtcaagatatcc 2552
Query: 1324 tctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgtcttcgtag 1383
||||| | || ||||| |||||||||| || |||||||| || || || ||||| ||
Sbjct: 2551 tctgtaacagagccatatatccagccaacttcctttccccattctgttttatcttcataa 2492
Query: 1384 ccgcagctgataac 1397
|| |||||||||||
Sbjct: 2491 ccacagctgataac 2478
Score = 65.9 bits (33), Expect = 1e-008
Identities = 147/185 (79%)
Strand = Plus / Minus
Query: 1747 gcatcataaccatatagtgcctgccgtctgaaaacacatccagtacccacataaatgggc 1806
|||||||||||||| ||||| |||| | |||||||| ||||| || ||||| || ||
Sbjct: 2149 gcatcataaccataaagtgcttgcctccgaaaaacacacccagttccaacatatattggt 2090
Query: 1807 ccttgaataccatccaaacctttcatgttgatatcaaaaaagacaacgttcctgttagca 1866
||||| | |||||| || |||||||| || |||||||| || |||||||| | || |
Sbjct: 2089 ccttgtaaaccatctaatcctttcatatttatatcaaagaatacaacgtttcgattcgag 2030
Query: 1867 tatcgatcatgacggtcaataccaccaaacctctgagggaactgtacatagcacactttc 1926
|||| ||||||||| ||||| ||| |||| | ||||| ||||| ||||| || |||||
Sbjct: 2029 tatctatcatgacgatcaatgccatcaaatcgttgaggaaactgcacataacaaactttt 1970
Query: 1927 ttccc 1931
|||||
Sbjct: 1969 ttccc 1965
>gb|AF417485.1| Populus tremuloides cellulose synthase (CesA2) gene, partial cds
Length = 1335
Score = 141 bits (71), Expect = 2e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 1692 gcaccacttgggccagcagttgcaagttcttgatggtggcttctttgttttaggagcatc 1751
||||||||| ||| |||||||||| || || | ||||| ||||||||||| ||||||||
Sbjct: 313 gcaccacttaggcaagcagttgcatgtcctcgttggtgatttctttgtttttggagcatc 254
Query: 1752 ataaccatatagtgcctgccgtctgaaaacacatccagtacccacataaatgggcccttg 1811
||||||||| ||||| |||| |||||||||||||||||| || ||||| || || |||||
Sbjct: 253 ataaccataaagtgcgtgccttctgaaaacacatccagtccctacatatataggtccttg 194
Query: 1812 aataccatccaaacctttcatgttgat 1838
||| ||||||||||||||||| |||||
Sbjct: 193 aatgccatccaaacctttcatattgat 167
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1854 gttcctgttagcatatcgatcatgacggtcaataccaccaaacctctgagggaactgtac 1913
||||| ||| ||||||||||||| | |||||| ||| |||||||||| || ||||| ||
Sbjct: 66 gttccggtttgcatatcgatcattcctgtcaatgccatcaaacctctgtggaaactggac 7
Query: 1914 atagca 1919
||||||
Sbjct: 6 atagca 1
>gb|CN523759.1|CN523759 GQ015M04.T3_A09 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M04_A09 5', mRNA sequence
Length = 677
Score = 139 bits (70), Expect = 9e-031
Identities = 190/230 (82%)
Strand = Plus / Minus
Query: 1168 aagaaaatttcgacagacccaagggcccagcgaaggacctggtgaagacggtcggaaagg 1227
|||||||| ||||| || ||||||||||| ||||| |||||||| ||||| || || |||
Sbjct: 409 aagaaaatctcgactgaaccaagggcccatcgaagaacctggtgtagacgatctgagagg 350
Query: 1228 ttcagaggcgcagaacctttgaatgcaggccgcttcgggatgcagtaaatagaccgccag 1287
|| | ||| || || || || |||||||||||||| || |||||||| | |||||||||
Sbjct: 349 ttaataggagctgaccccttaaatgcaggccgcttaggtatgcagtacacagaccgccac 290
Query: 1288 ccatggcagtgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccag 1347
||||||||||||||||| ||||| |||| |||||| ||||| | || ||||| ||||||
Sbjct: 289 ccatggcagtgcatcttgaatcctgtcaggatatcttctgttacagaaccatatatccag 230
Query: 1348 ccaatctcttttccccagtcggtcttgtcttcgtagccgcagctgataac 1397
|||| || || ||||| || ||||| ||||| || || |||||||||||
Sbjct: 229 ccaacttccttgccccattctgtcttatcttcataaccacagctgataac 180
>gb|CV275712.1|CV275712 WS0177.B21_F22 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_F22 3', mRNA sequence
Length = 419
Score = 129 bits (65), Expect = 9e-028
Identities = 155/185 (83%)
Strand = Plus / Plus
Query: 1168 aagaaaatttcgacagacccaagggcccagcgaaggacctggtgaagacggtcggaaagg 1227
|||||||| ||||| || ||||||||||| ||||| |||||||| ||||| || || |||
Sbjct: 229 aagaaaatctcgactgaaccaagggcccatcgaagaacctggtgtagacgatctgagagg 288
Query: 1228 ttcagaggcgcagaacctttgaatgcaggccgcttcgggatgcagtaaatagaccgccag 1287
|| | ||| || || || || |||||||||||||| || |||||||| | |||||||||
Sbjct: 289 ttaataggagctgaccccttaaatgcaggccgcttaggtatgcagtacacagaccgccac 348
Query: 1288 ccatggcagtgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccag 1347
||||||||||||||||| ||||| |||| |||||| ||||| | || ||||| ||||||
Sbjct: 349 ccatggcagtgcatcttgaatcctgtcaggatatcttctgttacagaaccatatatccag 408
Query: 1348 ccaat 1352
|||||
Sbjct: 409 ccaat 413
>gb|CF237106.1|CF237106 Ptajxtjxt2B1B0103 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 663
Score = 127 bits (64), Expect = 3e-027
Identities = 188/230 (81%)
Strand = Plus / Minus
Query: 1168 aagaaaatttcgacagacccaagggcccagcgaaggacctggtgaagacggtcggaaagg 1227
|||||||| |||| || ||||||||||| |||| |||||||| ||||| || || |||
Sbjct: 424 aagaaaatctcgantgaaccaagggcccacngaagaacctggtgtagacgatctgagagg 365
Query: 1228 ttcagaggcgcagaacctttgaatgcaggccgcttcgggatgcagtaaatagaccgccag 1287
|| | ||| || || || || |||||||||||||| || |||||||| | |||||||||
Sbjct: 364 ttaataggagccgaccccttaaatgcaggccgcttaggtatgcagtacacagaccgccac 305
Query: 1288 ccatggcagtgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccag 1347
|| |||||||||||||| ||||| |||| |||||| ||||| | || ||||||||||||
Sbjct: 304 ccgtggcagtgcatcttgaatcctgtcaggatatcttctgttacagaaccataaatccag 245
Query: 1348 ccaatctcttttccccagtcggtcttgtcttcgtagccgcagctgataac 1397
|||| || || ||||| || ||||| ||||| || || |||||||||||
Sbjct: 244 ccaacttccttgccccattctgtcttatcttcataaccacagctgataac 195
>gb|BP927588.1|BP927588 BP927588 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-073_N03.f 5', mRNA sequence
Length = 403
Score = 119 bits (60), Expect = 9e-025
Identities = 129/152 (84%)
Strand = Plus / Minus
Query: 1246 ttgaatgcaggccgcttcgggatgcagtaaatagaccgccagccatggcagtgcatctta 1305
|||||||| |||||||| || |||||||||| ||||||||| |||||||||||||||||
Sbjct: 375 ttgaatgctggccgcttaggtatgcagtaaacagaccgccatccatggcagtgcatcttg 316
Query: 1306 aatccagtcaagatatcctctgtgatcgatccataaatccagccaatctcttttccccag 1365
||||| ||||||||||| ||||| | || ||||| |||||||||| || ||||||||
Sbjct: 315 aatcctgtcaagatatcttctgtaacagagccatatatccagccaacttcctttccccat 256
Query: 1366 tcggtcttgtcttcgtagccgcagctgataac 1397
|| || || ||||| || || |||||||||||
Sbjct: 255 tctgttttatcttcataaccacagctgataac 224
>gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_G15 3', mRNA sequence
Length = 445
Score = 117 bits (59), Expect = 3e-024
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 541 gtcggcgtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatc 600
||||| |||||||| |||||||||| || ||| |||||||||||||| || ||||| |||
Sbjct: 282 gtcggtgtcctgttttgcctccccatcaaacctttgaggaacgggtaaagatggacaatc 341
Query: 601 acccagaaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||||||||| ||||||||||||||||| || || ||||| |||| |||||| |||||
Sbjct: 342 acccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtacccattgtt 400
>gb|DV465848.1|DV465848 MTUNUL1.P43.H11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 879
Score = 117 bits (59), Expect = 3e-024
Identities = 223/275 (81%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 1139 acccgtaccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagc 1198
|||||||||| || || ||||| |||| ||||||||||| ||||| ||||| ||||| |
Sbjct: 714 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 655
Query: 1199 gaaggacctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggcc 1258
| ||||||||||| | | || || ||||| | || ||||| ||||||||||||||||
Sbjct: 654 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcc 595
Query: 1259 gcttcggg-atgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaag 1317
| |||| ||||||||||| || | ||| || ||||||||||||| || ||| | |||
Sbjct: 594 t-tacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaacccacttaag 536
Query: 1318 atatcctctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgtct 1377
|||||||| |||| || ||||| ||||| ||||||||||||||||| || ||||| |||
Sbjct: 535 atatcctcagtgactgaaccatatatccaaccaatctcttttccccattcagtcttctct 476
Query: 1378 tcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| |||| ||| ||||| || ||||||||
Sbjct: 475 tcatagccacagccgatgacatgaattgcttcctt 441
Score = 52.0 bits (26), Expect = 2e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 1775 tgaaaacacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgt 1834
|||||||||| ||||| || ||||| | || |||||||| |||||||| ||||||||||
Sbjct: 111 tgaaaacacaaccagttcctacatatactggtccttgaatgccatccaaccctttcatgt 52
Query: 1835 tgatatcaaa 1844
| | ||||||
Sbjct: 51 taacatcaaa 42
>gb|DV466748.1|DV466748 MTUNUL1.P9.G02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 831
Score = 117 bits (59), Expect = 3e-024
Identities = 223/275 (81%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 1139 acccgtaccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagc 1198
|||||||||| || || ||||| |||| ||||||||||| ||||| ||||| ||||| |
Sbjct: 484 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 425
Query: 1199 gaaggacctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggcc 1258
| ||||||||||| | | || || ||||| | || ||||| ||||||||||||||||
Sbjct: 424 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcc 365
Query: 1259 gcttcggg-atgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaag 1317
| |||| ||||||||||| || | ||| || ||||||||||||| || ||| | |||
Sbjct: 364 t-tacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaacccacttaag 306
Query: 1318 atatcctctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgtct 1377
|||||||| |||| || ||||| ||||| ||||||||||||||||| || ||||| |||
Sbjct: 305 atatcctcagtgactgaaccatatatccaaccaatctcttttccccattcagtcttctct 246
Query: 1378 tcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| |||| ||| ||||| || ||||||||
Sbjct: 245 tcatagccacagccgatgacatgaattgcttcctt 211
>gb|AI163338.1|AI163338 A040P09U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 285
Score = 113 bits (57), Expect = 5e-023
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 1292 ggcagtgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaa 1351
||||||||||||| |||||| | ||||||||||| |||| ||| ||||||||||| ||||
Sbjct: 142 ggcagtgcatcttgaatccacttaagatatcctcagtgaccgacccataaatccaaccaa 83
Query: 1352 tctcttttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttcct 1411
||||||||||||| || ||||| ||||| |||| |||| ||| ||||| ||||||||||
Sbjct: 82 tctcttttccccattcagtcttctcttcaaagccacagccgatgacatgaatagcttcct 23
Query: 1412 t 1412
|
Sbjct: 22 t 22
>gb|BI131187.1|BI131187 G116P69Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 463
Score = 113 bits (57), Expect = 5e-023
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 1292 ggcagtgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaa 1351
||||||||||||| |||||| | ||||||||||| |||| ||| ||||||||||| ||||
Sbjct: 167 ggcagtgcatcttgaatccacttaagatatcctcagtgaccgacccataaatccaaccaa 108
Query: 1352 tctcttttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttcct 1411
||||||||||||| || ||||| ||||| |||| |||| ||| ||||| ||||||||||
Sbjct: 107 tctcttttccccattcagtcttctcttcaaagccacagccgatgacatgaatagcttcct 48
Query: 1412 t 1412
|
Sbjct: 47 t 47
>gb|AY573573.2| Populus tremula x Populus tremuloides cellulose synthase (CesA3-1)
mRNA, complete cds
Length = 3250
Score = 113 bits (57), Expect = 5e-023
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 1292 ggcagtgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaa 1351
||||||||||||| |||||| | ||||||||||| |||| ||| ||||||||||| ||||
Sbjct: 2102 ggcagtgcatcttgaatccacttaagatatcctcagtgaccgacccataaatccaaccaa 2043
Query: 1352 tctcttttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttcct 1411
||||||||||||| || ||||| ||||| |||| |||| ||| ||||| ||||||||||
Sbjct: 2042 tctcttttccccattcagtcttctcttcaaagccacagccgatgacatgaatagcttcct 1983
Query: 1412 t 1412
|
Sbjct: 1982 t 1982
Score = 97.6 bits (49), Expect = 3e-018
Identities = 120/141 (85%), Gaps = 2/141 (1%)
Strand = Plus / Minus
Query: 2422 tttttgctgaaaggaacccatttctttgcaaattcagatgtttcagacaat-gcttcaaa 2480
||||||| ||| |||||||| ||| ||||||| |||| |||||| |||| | ||||||
Sbjct: 1005 tttttgcagaatggaacccacttccttgcaaactcagctgtttct-acaagagattcaaa 947
Query: 2481 cgtaagcattgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataatc 2540
|||||||| ||||||||||||||||| ||||||||||| || || || || ||||| ||
Sbjct: 946 tgtaagcatagcagcaccatcatcagacacatagcaggaaactttatccacgggatagtc 887
Query: 2541 cacagaaaggatggaaaggac 2561
||||| |||||||||||||||
Sbjct: 886 cacagcaaggatggaaaggac 866
Score = 67.9 bits (34), Expect = 3e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 1775 tgaaaacacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgt 1834
|||||||||| ||||| |||||||| || || |||||||| |||||||| ||||||||||
Sbjct: 1652 tgaaaacacaaccagttcccacatacattggtccttgaatgccatccaatcctttcatgt 1593
Query: 1835 tgatatcaaa 1844
| | ||||||
Sbjct: 1592 taacatcaaa 1583
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 2167 ccaaggaatacctgaatcattccaggatgatcgcgtacgttgtttccaggccaggggctt 2226
|||||||||||||||||||| ||||| ||||| ||| ||| ||||| ||||| || ||
Sbjct: 1260 ccaaggaatacctgaatcatgccagggtgatcacgtgtgttatttcctggccaaggtgtt 1201
Query: 2227 ccatcttgcattgtccatccttcctcagg 2255
|| |||||||| |||||||| || |||||
Sbjct: 1200 ccgtcttgcatagtccatccctcgtcagg 1172
Score = 42.1 bits (21), Expect = 0.16
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 835 ccctggaacaccgcgaacagatgcgccgaaacgcctccgatgacccagaactg 887
|||||||| || || || ||||| || ||||| |||||||| |||||||||||
Sbjct: 2562 ccctggaagacggcaaagagatgggctgaaacacctccgatcacccagaactg 2510
>gb|BU895617.1|BU895617 X028D07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 571
Score = 109 bits (55), Expect = 8e-022
Identities = 222/275 (80%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 1139 acccgtaccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagc 1198
|||||||||| || || ||||| |||| ||||||||||| ||||| ||||| ||||| |
Sbjct: 454 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 395
Query: 1199 gaaggacctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggcc 1258
| ||||||||||| | | || || ||||| | || ||||| |||||||| |||||||
Sbjct: 394 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaacgcaggcc 335
Query: 1259 gcttcggg-atgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaag 1317
| |||| ||||||||||| || | ||| || ||||||||||||| || ||| | |||
Sbjct: 334 t-tacgggcatgcagtaaattgatctccatccgcggcagtgcatcttgaagccacttaag 276
Query: 1318 atatcctctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgtct 1377
|||||||| |||| || ||||| ||||| ||||||||||||||||| || ||||| |||
Sbjct: 275 atatcctcagtgactgacccatagatccaaccaatctcttttccccattcagtcttctct 216
Query: 1378 tcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| |||| ||| ||||| || ||||||||
Sbjct: 215 tcatagccacagccgatgacatgaattgcttcctt 181
>gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 629
Score = 109 bits (55), Expect = 8e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 541 gtcggcgtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatc 600
||||| |||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||
Sbjct: 535 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 476
Query: 601 acccagaaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||||||||| ||||||||||||||||| || || ||||| |||| |||||| |||||
Sbjct: 475 acccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtacccattgtt 417
>gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 486
Score = 109 bits (55), Expect = 8e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 541 gtcggcgtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatc 600
||||| |||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||
Sbjct: 152 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 93
Query: 601 acccagaaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||||||||| ||||||||||||||||| || || ||||| |||| |||||| |||||
Sbjct: 92 acccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtacccattgtt 34
>gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021B12F1, mRNA sequence
Length = 655
Score = 109 bits (55), Expect = 8e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 541 gtcggcgtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatc 600
||||| |||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||
Sbjct: 509 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 450
Query: 601 acccagaaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||||||||| ||||||||||||||||| || || ||||| |||| |||||| |||||
Sbjct: 449 acccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtacccattgtt 391
>gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300030F05F1, mRNA sequence
Length = 385
Score = 109 bits (55), Expect = 8e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 541 gtcggcgtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatc 600
||||| |||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||
Sbjct: 240 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 181
Query: 601 acccagaaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||||||||| ||||||||||||||||| || || ||||| |||| |||||| |||||
Sbjct: 180 acccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtacccattgtt 122
>gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300033F04F1, mRNA sequence
Length = 589
Score = 109 bits (55), Expect = 8e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 541 gtcggcgtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatc 600
||||| |||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||
Sbjct: 364 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 305
Query: 601 acccagaaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||||||||| ||||||||||||||||| || || ||||| |||| |||||| |||||
Sbjct: 304 acccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtacccattgtt 246
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 109 bits (55), Expect = 8e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 541 gtcggcgtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatc 600
||||| |||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||
Sbjct: 2998 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 2939
Query: 601 acccagaaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||||||||| ||||||||||||||||| || || ||||| |||| |||||| |||||
Sbjct: 2938 acccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtacccattgtt 2880
Score = 77.8 bits (39), Expect = 3e-012
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 1270 cagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaagatatcctctgtg 1329
||||||||||||| ||||||| | || ||||||||||| || |||| |||||||| |||
Sbjct: 2266 cagtaaatagacctccagccacgacaatgcatcttaaaacctgtcagaatatcctccgtg 2207
Query: 1330 atcgatccataaatccagccaatctcttttccccagtcggtcttgtcttcgtagccgcag 1389
||||| || ||||||||||| | ||| |||||| || || |||||||| || || ||
Sbjct: 2206 atcgaaccgtaaatccagcccagctcgagtccccattcagttttgtcttcatatccacaa 2147
Query: 1390 ctgataacatgtatagcttcctt 1412
||||| ||||| || ||||||||
Sbjct: 2146 ctgatcacatggatggcttcctt 2124
Score = 71.9 bits (36), Expect = 2e-010
Identities = 183/232 (78%)
Strand = Plus / Minus
Query: 2090 aacctggcctcttttctctcgagacataaacaaggcgaggcaactcatttccttccacat 2149
|||| |||||||| |||| || ||||| ||||||||||| | ||| || ||||| || |
Sbjct: 1539 aaccaggcctcttctctcgagatacatatacaaggcgagggagctcgttcccttcaacgt 1480
Query: 2150 cacgaccaccactttggccaaggaatacctgaatcattccaggatgatcgcgtacgttgt 2209
|| | || ||||| || || || ||||| |||||||| ||||| ||||| | ||||
Sbjct: 1479 catgtcctccactgtgaccgagaaatacttgaatcataccagggtgatccctcgtattgt 1420
Query: 2210 ttccaggccaggggcttccatcttgcattgtccatccttcctcaggaaccttttgggctt 2269
|||||||||| || ||||||||||||| |||| || || ||||||||| || ||||
Sbjct: 1419 ttccaggccatggtgttccatcttgcataatccacccctctgtaggaaccttctgtgctt 1360
Query: 2270 ttgcaaccaaggcattgatccttaccttgaattcctcgtattctctcttcat 2321
|||| || | ||||| |||| ||||||||||| || ||||||||||||||
Sbjct: 1359 ttgctacaatcgcatttatccgaaccttgaattcttcatattctctcttcat 1308
Score = 60.0 bits (30), Expect = 7e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 2677 tccaggtaagtctctctctcgattggaagccactttgggaactgatcaagaatccaggac 2736
||||| |||||||| | |||||||| | |||||| ||||| |||||||| ||||| ||
Sbjct: 952 tccagataagtctcgcgatcgattggcaaccacttggggaattgatcaaggatccatgaa 893
Query: 2737 atcgcaaaccagatttcacaga 2758
|| |||||||||||||| ||||
Sbjct: 892 attgcaaaccagatttcgcaga 871
Score = 42.1 bits (21), Expect = 0.16
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1942 tccatcatgaaacacatagcctcttttatggccttgctatt 1982
||||||| |||||||||||||||| | ||||||||||||
Sbjct: 1687 tccatcaagaaacacatagcctctcgaacggccttgctatt 1647
>gb|CN520281.1|CN520281 GQ0105.B3_A14 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_A14 5', mRNA sequence
Length = 783
Score = 107 bits (54), Expect = 3e-021
Identities = 192/238 (80%)
Strand = Plus / Minus
Query: 1775 tgaaaacacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgt 1834
|||| |||||||||||||| ||||| | |||||||||| ||||| | |||||||||||
Sbjct: 607 tgaagacacatccagtaccaacatatactggcccttgaaccccatctagacctttcatgt 548
Query: 1835 tgatatcaaaaaagacaacgttcctgttagcatatcgatcatgacggtcaataccaccaa 1894
| |||||||| || ||||| || | |||||||||| |||||| || ||||||||| |||
Sbjct: 547 ttatatcaaagaacacaacattgcgattagcatatctatcatggcgatcaataccatcaa 488
Query: 1895 acctctgagggaactgtacatagcacactttcttccccaccaaaggatccatcatgaaac 1954
||||||| || ||||| |||||||| | |||||||| | |||||||||| || |
Sbjct: 487 acctctgcggaaactggacatagcagagcttcttcccaagttggggatccatcaaaaagc 428
Query: 1955 acatagcctcttttatggccttgctattgttgatgtagtgatcacagtccaagttcaa 2012
|||| || ||| ||| |||||||| || |||||||| || ||||| ||||| |||||
Sbjct: 427 acatggcttctcttacagccttgctgttattgatgtaatggtcacaatccaaattcaa 370
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2056 gcattcatggcaccagccttcttgtgatggttata 2090
|||||||||||||| || |||||||| ||||||||
Sbjct: 326 gcattcatggcacctgctttcttgtggtggttata 292
>gb|AF081534.1|AF081534 Populus x canescens cellulose synthase (cel1) mRNA, complete cds
Length = 3395
Score = 107 bits (54), Expect = 3e-021
Identities = 192/238 (80%)
Strand = Plus / Minus
Query: 1775 tgaaaacacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgt 1834
|||| |||||||||||||| ||||| | |||||||||| ||||| | |||||||||||
Sbjct: 1776 tgaagacacatccagtaccaacatatactggcccttgaaccccatctagacctttcatgt 1717
Query: 1835 tgatatcaaaaaagacaacgttcctgttagcatatcgatcatgacggtcaataccaccaa 1894
| |||||||| || |||||||| | |||||||||| |||||| || || |||||| |||
Sbjct: 1716 ttatatcaaagaacacaacgttgcgattagcatatctatcatggcgatcgataccatcaa 1657
Query: 1895 acctctgagggaactgtacatagcacactttcttccccaccaaaggatccatcatgaaac 1954
||||||| || ||||| |||||||| | |||||||| | |||||||||| || |
Sbjct: 1656 acctctgcggaaactggacatagcagagcttcttcccaagttggggatccatcaaaaagc 1597
Query: 1955 acatagcctcttttatggccttgctattgttgatgtagtgatcacagtccaagttcaa 2012
|||| || ||| ||| |||||||| || |||||||| || ||||| ||||| |||||
Sbjct: 1596 acatggcttctcttacagccttgctgttattgatgtaatggtcacaatccaaattcaa 1539
Score = 103 bits (52), Expect = 5e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 2174 atacctgaatcattccaggatgatcgcgtacgttgtttccaggccaggggcttccatctt 2233
||||||||||||||||||||||||| ||| | ||||||||||||| ||| | ||||| |
Sbjct: 1377 atacctgaatcattccaggatgatcacgtgtgatgtttccaggccatggggtaccatcct 1318
Query: 2234 gcattgtccatccttcctcaggaaccttttgggcttttgcaaccaaggcattgatcctta 2293
|||| ||||||||| || || ||||||||| |||| |||||||| ||||||||||
Sbjct: 1317 gcatcacccatccttcttctggtttcttttgggcctttgacaccaaggcgttgatcctta 1258
Query: 2294 ccttgaattcctcgtattctctcttcat 2321
| |||||||| || |||||||| |||||
Sbjct: 1257 ctttgaattcttcatattctcttttcat 1230
Score = 63.9 bits (32), Expect = 4e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 1297 tgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaatctct 1356
|||||||| || || |||| |||||| ||||| | || ||||||||||| |||| ||||
Sbjct: 2278 tgcatcttgaagcctgtcaggatatcttctgtaacagaaccataaatccatccaacctct 2219
Query: 1357 tttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| ||||| || ||||| || ||||| || |||||||| || ||||||||
Sbjct: 2218 ttaccccattcggttttttcttcatacccgcaacttataacatgaatggcttcctt 2163
Score = 48.1 bits (24), Expect = 0.003
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 2710 tttgggaactgatcaagaatccaggacatcgcaaaccagatttcacagattacagatatg 2769
||||||||||| ||||| |||||||| | ||||||| | ||||| |||||||| ||
Sbjct: 841 tttgggaactggtcaaggatccaggagaggccaaaccatacctcacatattacagagata 782
Query: 2770 agccacaatgca 2781
||||||||||||
Sbjct: 781 agccacaatgca 770
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2056 gcattcatggcaccagccttcttgtgatggttata 2090
|||||||||||||| || |||||||| ||||||||
Sbjct: 1495 gcattcatggcacctgctttcttgtggtggttata 1461
>gb|AF527387.1| Populus tremuloides xylem-specific cellulose synthase (CesA3) mRNA,
complete cds
Length = 3401
Score = 107 bits (54), Expect = 3e-021
Identities = 192/238 (80%)
Strand = Plus / Minus
Query: 1775 tgaaaacacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgt 1834
|||| |||||||||||||| ||||| | |||||||||| ||||| | |||||||||||
Sbjct: 1788 tgaagacacatccagtaccaacatatactggcccttgaaccccatctagacctttcatgt 1729
Query: 1835 tgatatcaaaaaagacaacgttcctgttagcatatcgatcatgacggtcaataccaccaa 1894
| |||||||| || |||||||| | |||||||||| |||||| || || |||||| |||
Sbjct: 1728 ttatatcaaagaacacaacgttgcgattagcatatctatcatggcgatcgataccatcaa 1669
Query: 1895 acctctgagggaactgtacatagcacactttcttccccaccaaaggatccatcatgaaac 1954
||||||| || ||||| |||||||| | |||||||| | |||||||||| || |
Sbjct: 1668 acctctgcggaaactggacatagcagagcttcttcccaagttggggatccatcaaaaagc 1609
Query: 1955 acatagcctcttttatggccttgctattgttgatgtagtgatcacagtccaagttcaa 2012
|||| || ||| ||| |||||||| || |||||||| || ||||| ||||| |||||
Sbjct: 1608 acatggcttctcttacagccttgctgttattgatgtaatggtcacaatccaaattcaa 1551
Score = 87.7 bits (44), Expect = 3e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 2174 atacctgaatcattccaggatgatcgcgtacgttgtttccaggccaggggcttccatctt 2233
||||||||||||||||||||||||| || | ||||||||||||| ||| | ||||| |
Sbjct: 1389 atacctgaatcattccaggatgatcacgggtgatgtttccaggccatggggtaccatcct 1330
Query: 2234 gcattgtccatccttcctcaggaaccttttgggcttttgcaaccaaggcattgatcctta 2293
|||| ||||||||| || || ||||||||| |||| ||||| || ||||||||||
Sbjct: 1329 gcatcacccatccttcttctggtttcttttgggcctttgacaccaatgcgttgatcctta 1270
Query: 2294 ccttgaattcctcgtattctctcttcat 2321
| |||||||| || |||||||| |||||
Sbjct: 1269 ctttgaattcttcatattctcttttcat 1242
Score = 56.0 bits (28), Expect = 1e-005
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 1297 tgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaatctct 1356
|||||||| || || |||| |||||| ||||| | || ||||||||||| |||| ||||
Sbjct: 2290 tgcatcttgaagcctgtcaggatatcttctgtaacagaaccataaatccatccaacctct 2231
Query: 1357 tttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| || || || ||||| || ||||| || |||||||| || ||||||||
Sbjct: 2230 ttaccccattccgttttttcttcatacccgcaacttataacatgaatggcttcctt 2175
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2056 gcattcatggcaccagccttcttgtgatggttata 2090
|||||||||||||| || |||||||| ||||||||
Sbjct: 1507 gcattcatggcacctgctttcttgtggtggttata 1473
>gb|AY573571.1| Populus tremula x Populus tremuloides cellulose synthase (CesA1)
mRNA, complete cds
Length = 3472
Score = 107 bits (54), Expect = 3e-021
Identities = 192/238 (80%)
Strand = Plus / Minus
Query: 1775 tgaaaacacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgt 1834
|||| |||||||||||||| ||||| | |||||||||| ||||| | |||||||||||
Sbjct: 1860 tgaagacacatccagtaccaacatatactggcccttgaaccccatctagacctttcatgt 1801
Query: 1835 tgatatcaaaaaagacaacgttcctgttagcatatcgatcatgacggtcaataccaccaa 1894
| |||||||| || |||||||| | |||||||||| |||||| || || |||||| |||
Sbjct: 1800 ttatatcaaagaacacaacgttgcgattagcatatctatcatggcgatcgataccatcaa 1741
Query: 1895 acctctgagggaactgtacatagcacactttcttccccaccaaaggatccatcatgaaac 1954
||||||| || ||||| |||||||| | |||||||| | |||||||||| || |
Sbjct: 1740 acctctgcggaaactggacatagcagagcttcttcccaagttggggatccatcaaaaagc 1681
Query: 1955 acatagcctcttttatggccttgctattgttgatgtagtgatcacagtccaagttcaa 2012
|||| || ||| ||| |||||||| || |||||||| || ||||| ||||| |||||
Sbjct: 1680 acatggcttctcttacagccttgctgttattgatgtaatggtcacaatccaaattcaa 1623
Score = 103 bits (52), Expect = 5e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 2174 atacctgaatcattccaggatgatcgcgtacgttgtttccaggccaggggcttccatctt 2233
||||||||||||||||||||||||| ||| | ||||||||||||| ||| | ||||| |
Sbjct: 1461 atacctgaatcattccaggatgatcacgtgtgatgtttccaggccatggggtaccatcct 1402
Query: 2234 gcattgtccatccttcctcaggaaccttttgggcttttgcaaccaaggcattgatcctta 2293
|||| ||||||||| || || ||||||||| |||| |||||||| ||||||||||
Sbjct: 1401 gcatcacccatccttcttctggtttcttttgggcctttgacaccaaggcgttgatcctta 1342
Query: 2294 ccttgaattcctcgtattctctcttcat 2321
| |||||||| || |||||||| |||||
Sbjct: 1341 ctttgaattcttcatattctcttttcat 1314
Score = 63.9 bits (32), Expect = 4e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 1297 tgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaatctct 1356
|||||||| || || |||| |||||| ||||| | || ||||||||||| |||| ||||
Sbjct: 2362 tgcatcttgaagcctgtcaggatatcttctgtaacagaaccataaatccatccaacctct 2303
Query: 1357 tttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| ||||| || ||||| || ||||| || |||||||| || ||||||||
Sbjct: 2302 ttaccccattcggttttttcttcatacccgcaacttataacatgaatggcttcctt 2247
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2056 gcattcatggcaccagccttcttgtgatggttata 2090
|||||||||||||| || |||||||| ||||||||
Sbjct: 1579 gcattcatggcacctgctttcttgtggtggttata 1545
>gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 5', mRNA sequence
Length = 912
Score = 105 bits (53), Expect = 1e-020
Identities = 194/241 (80%)
Strand = Plus / Minus
Query: 2352 aaccttgtctttcaggtagtctatcttctgttggaagtaccactcaggagcacgaggctc 2411
|||||||||||| | |||||| ||||| || ||||||||| || ||||| || |||||
Sbjct: 901 aaccttgtcttttaagtagtcaatcttttgagcgaagtaccattctggagctcgcggctc 842
Query: 2412 gatattaaactttttgctgaaaggaacccatttctttgcaaattcagatgtttcagacaa 2471
|||| | | || |||| ||||||||||||||| | ||||||||||| |||||||| |
Sbjct: 841 aatatcatatttcttgcagaaaggaacccattttctagcaaattcagacgtttcagatat 782
Query: 2472 tgcttcaaacgtaagcattgcagcaccatcatcagaaacatagcaggagaccttctcaac 2531
|||||||| || | ||| ||||| |||||||| ||||||||||| ||||| || || ||
Sbjct: 781 ggcttcaaatgtcaacatagcagctccatcatctgaaacatagcaagagactttgtcgac 722
Query: 2532 cggataatccacagaaaggatggaaaggacagtgttcgctgtgaccaagggaggttcctt 2591
|| ||||| || | ||| || || || ||||| || |||||||||| |||||||||||
Sbjct: 721 tgggtaatctactgcaagaatagatagcacagtattggctgtgaccagtggaggttcctt 662
Query: 2592 t 2592
|
Sbjct: 661 t 661
>gb|CF235713.1|CF235713 PtaJXT0026B7B0703 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 639
Score = 103 bits (52), Expect = 5e-020
Identities = 426/548 (77%), Gaps = 2/548 (0%)
Strand = Plus / Minus
Query: 1775 tgaaaacacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgt 1834
||||||| ||||| || |||||||| | || || ||||| ||||| | ||| |||||||
Sbjct: 563 tgaaaacgcatcctgtgcccacatacactggaccctgaattccatctagacccttcatgt 504
Query: 1835 tgatatcaaaaaagacaacgttcctgttagcatatcgatcatgacggtcaataccaccaa 1894
| |||||||| || ||| ||| ||||| || ||||||||||| ||||| ||| |||
Sbjct: 503 taatatcaaagaaaacagtgtttctgttggcgtatcgatcatgtgtatcaatgccatcaa 444
Query: 1895 acctctgagggaactgtacatagcacactttcttccccaccaaaggatccatcatgaaac 1954
| || ||||| || || || ||||| |||||||| || | | || ||||||| |||||
Sbjct: 443 atctttgaggaaattgcacgtagcagactttctttccaatctgggggtccatcaagaaac 384
Query: 1955 acatagcctcttttatggccttgctattgttgatgtagtgatcacagtccaagttcaata 2014
||||||||||| | |||||||||||| || | || || ||||| |||||||||| |
Sbjct: 383 acatagcctctcggacggccttgctattatttacataatggtcacaatccaagttcagca 324
Query: 2015 ggtatgcagcatttgataag-acagcagagacacggaccagtgcattcatggcaccagcc 2073
| | | |||||| | |||| || |||||||| || | ||| |||||||||||||| ||
Sbjct: 323 tgaaaggagcattgg-taagtactgcagagacccgaatcagggcattcatggcaccggct 265
Query: 2074 ttcttgtgatggttataacctggcctcttttctctcgagacataaacaaggcgaggcaac 2133
|| || ||||| | |||| |||||||| |||| || ||||| ||||||||||| | |
Sbjct: 264 tttttatgatgtgaaaaaccaggcctcttctctcgagatacatatacaaggcgagggagc 205
Query: 2134 tcatttccttccacatcacgaccaccactttggccaaggaatacctgaatcattccagga 2193
|| || ||||| || ||| | || ||||| || || || ||||| |||||||| |||||
Sbjct: 204 tcgttcccttcaacgtcatgtcctccactgtgaccgagaaatacttgaatcataccaggg 145
Query: 2194 tgatcgcgtacgttgtttccaggccaggggcttccatcttgcattgtccatccttcctca 2253
||||| | |||||||||||||| || ||||||||||||| |||| || || |
Sbjct: 144 tgatccctcgtattgtttccaggccatggtgttccatcttgcataatccacccctctgta 85
Query: 2254 ggaaccttttgggcttttgcaaccaaggcattgatccttaccttgaattcctcgtattct 2313
|||||||| || |||||||| || | ||||| |||| ||||||||||| |||||||||
Sbjct: 84 ggaaccttctgtgcttttgctacaatcgcatttatccgaaccttgaattcttcgtattct 25
Query: 2314 ctcttcat 2321
||||||||
Sbjct: 24 ctcttcat 17
>gb|AF072131.1|AF072131 Populus tremuloides secondary xylem cellulose synthase (celA) mRNA,
complete cds
Length = 3232
Score = 101 bits (51), Expect = 2e-019
Identities = 221/275 (80%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 1139 acccgtaccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagc 1198
|||||||||| || || ||||| |||| ||||||||||| ||||| ||||| ||||| |
Sbjct: 2280 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 2221
Query: 1199 gaaggacctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggcc 1258
| ||||||||||| | | || || ||||| | || ||||| ||||||||||||||||
Sbjct: 2220 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcc 2161
Query: 1259 gcttcggg-atgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaag 1317
| |||| ||||||||||| || | ||| || ||||||||||||| || ||| | |||
Sbjct: 2160 t-tacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaagccacttaag 2102
Query: 1318 atatcctctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgtct 1377
|||||||| |||| || ||||| ||||| ||||||| ||||||||| || ||||| |||
Sbjct: 2101 atatcctcagtgactgacccatatatccaaccaatctgttttccccattcagtcttctct 2042
Query: 1378 tcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| |||| ||| || || || ||||||||
Sbjct: 2041 tcatagccacagccgatgacttgaatcgcttcctt 2007
Score = 85.7 bits (43), Expect = 1e-014
Identities = 141/171 (82%), Gaps = 2/171 (1%)
Strand = Plus / Minus
Query: 2422 tttttgctgaaaggaacccatttctttgcaaattcagatgtttcagacaat-gcttcaaa 2480
||||||| ||| |||||||| ||| ||||||| |||| |||||| |||| | ||||||
Sbjct: 1027 tttttgcagaacggaacccacttccttgcaaactcagctgtttct-acaagagattcaaa 969
Query: 2481 cgtaagcattgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataatc 2540
| |||||| || |||||||||||||| || ||||||||||| || || || ||||| ||
Sbjct: 968 tgaaagcatagctgcaccatcatcagacacgtagcaggagactttatcgacgggatagtc 909
Query: 2541 cacagaaaggatggaaaggacagtgttcgctgtgaccaagggaggttcctt 2591
||||| ||||||||||||||| || || || |||| ||| || ||||||||
Sbjct: 908 cacagcaaggatggaaaggactgtattggcagtgatcaatggcggttcctt 858
Score = 60.0 bits (30), Expect = 7e-007
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 2167 ccaaggaatacctgaatcattcc-aggatgatcgcgtacgttgtttccaggccaggggct 2225
|||||||| ||||||||||| || ||| ||||| ||| ||| || |||||||| || |
Sbjct: 1283 ccaaggaagacctgaatcatgcccagggtgatcacgtgtgttattcccaggccaaggtgt 1224
Query: 2226 tccatcttgcattgtccatccttcctcagg 2255
|||||||||||| ||||||||||| |||||
Sbjct: 1223 tccatcttgcatagtccatccttcttcagg 1194
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1892 caaacctctgagggaactgtacatagca 1919
||||||||||||||||||| ||||||||
Sbjct: 1560 caaacctctgagggaactgcacatagca 1533
Score = 44.1 bits (22), Expect = 0.040
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1807 ccttgaataccatccaaacctttcatgttgatatcaaa 1844
|||||||| |||||||| ||||||||||| | ||||||
Sbjct: 1645 ccttgaatgccatccaaccctttcatgttaacatcaaa 1608
>gb|AY573574.1| Populus tremula x Populus tremuloides cellulose synthase (CesA3-2)
mRNA, complete cds
Length = 3358
Score = 101 bits (51), Expect = 2e-019
Identities = 221/275 (80%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 1139 acccgtaccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagc 1198
|||||||||| || || ||||| |||| ||||||||||| ||||| ||||| ||||| |
Sbjct: 2338 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 2279
Query: 1199 gaaggacctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggcc 1258
| ||||||||||| | | || || ||||| | || ||||| || ||||| |||||||
Sbjct: 2278 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatccgttgaacgcaggcc 2219
Query: 1259 gcttcggg-atgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaag 1317
| |||| ||||||||||| || | ||| || ||||||||||||| || ||| | |||
Sbjct: 2218 t-tacgggcatgcagtaaattgatctccatccgcggcagtgcatcttgaagccacttaag 2160
Query: 1318 atatcctctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgtct 1377
|||||||| |||| || ||||| ||||| ||||||||||||||||| || ||||| |||
Sbjct: 2159 atatcctcagtgactgacccatagatccaaccaatctcttttccccattcagtcttctct 2100
Query: 1378 tcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| |||| ||| ||||| || ||||||||
Sbjct: 2099 tcatagccacagccgatgacatgaattgcttcctt 2065
Score = 79.8 bits (40), Expect = 7e-013
Identities = 115/140 (82%)
Strand = Plus / Minus
Query: 2422 tttttgctgaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaac 2481
||||||| ||| |||||||| ||| ||||||| |||| |||||| || | ||||||
Sbjct: 1088 tttttgcagaacggaacccacttccttgcaaactcagctgtttctaccagagattcaaat 1029
Query: 2482 gtaagcattgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataatcc 2541
| |||||| || |||||||||||||| || |||||||| || || || || ||||| |||
Sbjct: 1028 gaaagcatagctgcaccatcatcagacacgtagcaggaaactttatcgacgggatagtcc 969
Query: 2542 acagaaaggatggaaaggac 2561
|||| |||||||||||||||
Sbjct: 968 acagcaaggatggaaaggac 949
Score = 73.8 bits (37), Expect = 5e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 2167 ccaaggaatacctgaatcattccaggatgatcgcgtacgttgtttccaggccaggggctt 2226
|||||||| ||||||||||| ||||| ||||| ||| ||| || |||||||| || ||
Sbjct: 1343 ccaaggaagacctgaatcatgccagggtgatcacgtgtgttattcccaggccaaggtgtt 1284
Query: 2227 ccatcttgcattgtccatccttcctcagg 2255
||||||||||| ||||||||||| |||||
Sbjct: 1283 ccatcttgcatagtccatccttcttcagg 1255
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1892 caaacctctgagggaactgtacatagca 1919
||||||||||||||||||| ||||||||
Sbjct: 1618 caaacctctgagggaactgcacatagca 1591
Score = 44.1 bits (22), Expect = 0.040
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1807 ccttgaataccatccaaacctttcatgttgatatcaaa 1844
|||||||| |||||||| ||||||||||| | ||||||
Sbjct: 1703 ccttgaatgccatccaaccctttcatgttaacatcaaa 1666
>gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1) mRNA, complete cds
Length = 3215
Score = 101 bits (51), Expect = 2e-019
Identities = 221/275 (80%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 1139 acccgtaccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagc 1198
|||||||||| || || ||||| |||| ||||||||||| ||||| ||||| ||||| |
Sbjct: 2263 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 2204
Query: 1199 gaaggacctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggcc 1258
| ||||||||||| | | || || ||||| | || ||||| ||||||||||||||||
Sbjct: 2203 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcc 2144
Query: 1259 gcttcggg-atgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaag 1317
| |||| ||||||||||| || | ||| || ||||||||||||| || ||| | |||
Sbjct: 2143 t-tacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaagccacttaag 2085
Query: 1318 atatcctctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgtct 1377
|||||||| |||| || ||||| ||||| ||||||| ||||||||| || ||||| |||
Sbjct: 2084 atatcctcagtgactgacccatatatccaaccaatctgttttccccattcagtcttctct 2025
Query: 1378 tcgtagccgcagctgataacatgtatagcttcctt 1412
|| ||||| |||| ||| || || || ||||||||
Sbjct: 2024 tcatagccacagccgatgacttgaatcgcttcctt 1990
Score = 85.7 bits (43), Expect = 1e-014
Identities = 141/171 (82%), Gaps = 2/171 (1%)
Strand = Plus / Minus
Query: 2422 tttttgctgaaaggaacccatttctttgcaaattcagatgtttcagacaat-gcttcaaa 2480
||||||| ||| |||||||| ||| ||||||| |||| |||||| |||| | ||||||
Sbjct: 1010 tttttgcagaacggaacccacttccttgcaaactcagctgtttct-acaagagattcaaa 952
Query: 2481 cgtaagcattgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataatc 2540
| |||||| || |||||||||||||| || ||||||||||| || || || ||||| ||
Sbjct: 951 tgaaagcatagctgcaccatcatcagacacgtagcaggagactttatcgacgggatagtc 892
Query: 2541 cacagaaaggatggaaaggacagtgttcgctgtgaccaagggaggttcctt 2591
||||| ||||||||||||||| || || || |||| ||| || ||||||||
Sbjct: 891 cacagcaaggatggaaaggactgtattggcagtgatcaatggcggttcctt 841
Score = 60.0 bits (30), Expect = 7e-007
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 2167 ccaaggaatacctgaatcattcc-aggatgatcgcgtacgttgtttccaggccaggggct 2225
|||||||| ||||||||||| || ||| ||||| ||| ||| || |||||||| || |
Sbjct: 1266 ccaaggaagacctgaatcatgcccagggtgatcacgtgtgttattcccaggccaaggtgt 1207
Query: 2226 tccatcttgcattgtccatccttcctcagg 2255
|||||||||||| ||||||||||| |||||
Sbjct: 1206 tccatcttgcatagtccatccttcttcagg 1177
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1892 caaacctctgagggaactgtacatagca 1919
||||||||||||||||||| ||||||||
Sbjct: 1543 caaacctctgagggaactgcacatagca 1516
Score = 44.1 bits (22), Expect = 0.040
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1807 ccttgaataccatccaaacctttcatgttgatatcaaa 1844
|||||||| |||||||| ||||||||||| | ||||||
Sbjct: 1628 ccttgaatgccatccaaccctttcatgttaacatcaaa 1591
>gb|AI162302.1|AI162302 A015P47U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 445
Score = 99.6 bits (50), Expect = 8e-019
Identities = 120/142 (84%), Gaps = 1/142 (0%)
Strand = Plus / Minus
Query: 1256 gccgcttcgggatgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtca 1315
||||||| || |||||||||| ||||||||| ||||||||||||||||| |||| ||||
Sbjct: 386 gccgcttaggtatgcagtaaacagaccgccatccatggcagtgcatctt-gatcctgtca 328
Query: 1316 agatatcctctgtgatcgatccataaatccagccaatctcttttccccagtcggtcttgt 1375
||||||||||||| | || ||||| |||||||||| || |||||||| || || || |
Sbjct: 327 agatatcctctgtaacagagccatatatccagccaacttcctttccccattctgttttat 268
Query: 1376 cttcgtagccgcagctgataac 1397
|||| || || |||||||||||
Sbjct: 267 cttcataaccacagctgataac 246
>gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 490
Score = 97.6 bits (49), Expect = 3e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 547 gtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcacccag 606
|||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct: 222 gtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatcacccag 163
Query: 607 aaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||| |||||||||||||| || || || ||||| |||| |||||||||||
Sbjct: 162 aaggcaaagaagagcttcccaaatagaggtccccatgactgatacccgttgtt 110
>gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 441
Score = 97.6 bits (49), Expect = 3e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 547 gtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcacccag 606
|||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct: 151 gtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatcacccag 92
Query: 607 aaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||| |||||||||||||| || || || ||||| |||| |||||||||||
Sbjct: 91 aaggcaaagaagagcttcccaaatagaggtccccatgactgatacccgttgtt 39
>gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P74 5', mRNA sequence
Length = 389
Score = 97.6 bits (49), Expect = 3e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 547 gtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcacccag 606
|||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct: 222 gtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatcacccag 163
Query: 607 aaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||| |||||||||||||| || || || ||||| |||| |||||||||||
Sbjct: 162 aaggcaaagaagagcttcccaaatagaggtccccatgactgatacccgttgtt 110
>gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500004B05F1, mRNA sequence
Length = 634
Score = 97.6 bits (49), Expect = 3e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 547 gtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcacccag 606
|||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct: 354 gtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatcacccag 295
Query: 607 aaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||| ||||||||||||||||| || || ||||| |||| ||||| |||||
Sbjct: 294 aaggcaaagaagagcttcccgaatagaggtccccatgactgatacccattgtt 242
>gb|CF236447.1|CF236447 PtaJXT2H2H0216 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 637
Score = 91.7 bits (46), Expect = 2e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 2677 tccaggtaagtctctctctcgattggaagccactttgggaactgatcaagaatccaggac 2736
||||| |||||||| | |||||||| | |||||| |||||||||||||||||||| ||
Sbjct: 315 tccagataagtctcgcgatcgattggcaaccacttggggaactgatcaagaatccacgaa 256
Query: 2737 atcgcaaaccagatttcacaga 2758
||||||||||||||||||||||
Sbjct: 255 atcgcaaaccagatttcacaga 234
>gb|BI127228.1|BI127228 G057P27Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 435
Score = 89.7 bits (45), Expect = 8e-016
Identities = 146/177 (82%), Gaps = 2/177 (1%)
Strand = Plus / Minus
Query: 1237 gcagaacctttgaatgcaggccgcttcggg-atgcagtaaatagaccgccagccatggca 1295
||||| |||||||||||||||| | |||| ||||||||||| || | ||| || ||||
Sbjct: 191 gcagatcctttgaatgcaggcct-tgcgggcatgcagtaaattgatctccatcctcggca 133
Query: 1296 gtgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaatctc 1355
||||||||| || ||| | ||||||||||| |||| || || || ||||| ||||||||
Sbjct: 132 gtgcatcttgaagccacttaagatatcctcagtgactgacccgtatatccaaccaatctc 73
Query: 1356 ttttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttcctt 1412
||||||||| || ||||| ||||| ||||| |||| ||| ||||| || ||||||||
Sbjct: 72 ttttccccattcagtcttctcttcatagccacagccgatgacatgaattgcttcctt 16
>gb|CA926289.1|CA926289 MTU6CR.P13.C05 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 429
Score = 89.7 bits (45), Expect = 8e-016
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 1804 ggcccttgaataccatccaaacctttcatgttgatatcaaaaaagacaacgttcctgtta 1863
|||||||||| ||||| | |||||||||||| |||||||| || |||||||| | |||
Sbjct: 419 ggcccttgaaccccatctagacctttcatgtttatatcaaagaacacaacgttgcgatta 360
Query: 1864 gcatatcgatcatgacggtcaataccaccaaacctctgagggaactgtacatagcacact 1923
||||||| |||||| || || |||||| |||||||||| || ||||| |||||||| |
Sbjct: 359 gcatatctatcatggcgatcgataccatcaaacctctgcggaaactggacatagcagagc 300
Query: 1924 ttcttccccaccaaaggatccatcatgaaacacatagcctcttttatggccttgctattg 1983
|||||||| | |||||||||| || ||||| || ||| ||| |||||||| ||
Sbjct: 299 ttcttcccaagttggggatccatcaaaaagcacatggcttctcttacagccttgctgtta 240
Query: 1984 ttgatgtagtgatcacagtccaagttcaa 2012
|||||||| || ||||| ||||| |||||
Sbjct: 239 ttgatgtaatggtcacaatccaaattcaa 211
Score = 60.0 bits (30), Expect = 7e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 2174 atacctgaatcattccaggatgatcgcgtacgttgtttccaggcca 2219
||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 49 atacctgaatcattccaggatgatcacgtgtgatgtttccaggcca 4
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2056 gcattcatggcaccagccttcttgtgatggttata 2090
|||||||||||||| || |||||||| ||||||||
Sbjct: 167 gcattcatggcacctgctttcttgtggtggttata 133
>gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_I15 5', mRNA sequence
Length = 777
Score = 89.7 bits (45), Expect = 8e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 547 gtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcacccag 606
|||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct: 515 gtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatcacccag 456
Query: 607 aaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||| |||||||||||||| || || || ||||| |||| ||||| |||||
Sbjct: 455 aaggcaaagaagagcttcccaaatagaggtccccatgactgatacccattgtt 403
>gb|CX169886.1|CX169886 G10_69-94_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 620
Score = 89.7 bits (45), Expect = 8e-016
Identities = 177/221 (80%)
Strand = Plus / Minus
Query: 1780 acacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgttgata 1839
|||||||||||||||||||| | || |||||||||||||||| ||| ||| ||| |||
Sbjct: 433 acacatccagtacccacatagacaggtccttgaataccatccagacccctcaagtttata 374
Query: 1840 tcaaaaaagacaacgttcctgttagcatatcgatcatgacggtcaataccaccaaacctc 1899
||||| || ||| || | || ||||||||||||| | |||||| ||| |||| ||
Sbjct: 373 tcaaagaatacagtattgcgattggcatatcgatcattcctgtcaatgccatcaaatctt 314
Query: 1900 tgagggaactgtacatagcacactttcttccccaccaaaggatccatcatgaaacacata 1959
|| || ||||| |||||||| || | ||||| | ||||||||||||||||||||||
Sbjct: 313 tgtggaaactgaacatagcagacatgtttcccaaggttaggatccatcatgaaacacata 254
Query: 1960 gcctcttttatggccttgctattgttgatgtagtgatcaca 2000
|| ||| | | |||||||||||||| ||||| ||||||||
Sbjct: 253 gcttctctcaaagccttgctattgtttatgtaatgatcaca 213
Score = 44.1 bits (22), Expect = 0.040
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2158 ccactttggccaaggaatacctgaatcattccaggatg 2195
||||||||||| | ||| |||||||||||||| |||||
Sbjct: 55 ccactttggcccaagaaaacctgaatcattcctggatg 18
>gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_B11 3', mRNA sequence
Length = 720
Score = 89.7 bits (45), Expect = 8e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 547 gtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcacccag 606
|||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct: 674 gtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatcacccag 615
Query: 607 aaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgtt 659
||||| |||||||||||||| || || || ||||| |||| ||||| |||||
Sbjct: 614 aaggcaaagaagagcttcccaaatagaggtccccatgactgatacccattgtt 562
>gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 367
Score = 87.7 bits (44), Expect = 3e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 547 gtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcacccag 606
|||||||| |||||||||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct: 112 gtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatcacccag 53
Query: 607 aaggcgaagaagagcttccc 626
||||| ||||||||||||||
Sbjct: 52 aaggcaaagaagagcttccc 33
>gb|AJ778476.1|AJ778476 AJ778476 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600001D07F1, mRNA sequence
Length = 677
Score = 87.7 bits (44), Expect = 3e-015
Identities = 104/124 (83%)
Strand = Plus / Minus
Query: 1297 tgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaatctct 1356
|||||||| || |||||||| ||||| ||||| | || ||||| ||||| |||||||||
Sbjct: 136 tgcatcttgaacccagtcaaaatatcttctgtaacagaaccatagatccatccaatctct 77
Query: 1357 tttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttccttcaga 1416
|| ||||| || ||||||||||| || || ||||| |||||||| |||||||| |||| |
Sbjct: 76 ttgccccattcagtcttgtcttcatatccacagctaataacatggatagcttctttcaaa 17
Query: 1417 agag 1420
||||
Sbjct: 16 agag 13
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 871 ccgatgacccagaactgctcgttcctccaccagtc 905
|||||||||||||| || || ||||||||||||||
Sbjct: 562 ccgatgacccagaattgttcattcctccaccagtc 528
>gb|AY162181.1| Populus tremuloides cellulose synthase (CesA4) mRNA, complete cds
Length = 3640
Score = 87.7 bits (44), Expect = 3e-015
Identities = 104/124 (83%)
Strand = Plus / Minus
Query: 1297 tgcatcttaaatccagtcaagatatcctctgtgatcgatccataaatccagccaatctct 1356
||||||||||| |||||||| ||||| ||||| | || ||||| ||||| |||||||||
Sbjct: 2402 tgcatcttaaacccagtcaaaatatcttctgtaacagacccatagatccatccaatctct 2343
Query: 1357 tttccccagtcggtcttgtcttcgtagccgcagctgataacatgtatagcttccttcaga 1416
|| |||| || ||||||||||| || || ||||| |||||||| |||||||| |||| |
Sbjct: 2342 ttggcccattcagtcttgtcttcatatccacagctaataacatggatagcttctttcaaa 2283
Query: 1417 agag 1420
||||
Sbjct: 2282 agag 2279
Score = 73.8 bits (37), Expect = 5e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 2209 tttccaggccaggggcttccatcttgcattgtccatccttcctcaggaaccttttgggct 2268
||||||||||| || ||||||| ||||||||||| ||||| || || | |||||| |||
Sbjct: 1517 tttccaggccatggagttccatcctgcattgtccaaccttcttctggcatcttttgagct 1458
Query: 2269 tttgcaaccaaggcattgatccttaccttgaattcctcgtattctctcttcat 2321
|| ||||| | |||||||||| ||||||||||| || |||||||| |||||
Sbjct: 1457 ttggcaacaagagcattgatccgcaccttgaattcttcatattctcttttcat 1405
Score = 46.1 bits (23), Expect = 0.010
Identities = 107/135 (79%)
Strand = Plus / Minus
Query: 2496 accatcatcagaaacatagcaggagaccttctcaaccggataatccacagaaaggatgga 2555
||||||||| ||||||||||| || || || || || || ||||| |||| ||| |||||
Sbjct: 1230 accatcatctgaaacatagcatgatactttgtcgacagggtaatcaacagcaagaatgga 1171
Query: 2556 aaggacagtgttcgctgtgaccaagggaggttcctttgtgggatcaaccgtactgacaaa 2615
| |||||||| ||||| || | |||||||| || ||||||| || ||||| |||||
Sbjct: 1170 caacacagtgtttgctgttacaataggaggttctttcatgggatccactgtactaacaaa 1111
Query: 2616 gaagtcgattggagc 2630
|| ||| || |||||
Sbjct: 1110 gatgtcaataggagc 1096
>gb|CK319325.1|CK319325 X9P09e02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 251
Score = 85.7 bits (43), Expect = 1e-014
Identities = 189/235 (80%), Gaps = 2/235 (0%)
Strand = Plus / Minus
Query: 1140 cccgtaccaaagtgggcagtgcttgctgaagaaaatttcgacagacccaagggcccagcg 1199
||||||||| || || ||||| |||| ||||||||||| ||||| ||||| ||||| ||
Sbjct: 238 cccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatcg 179
Query: 1200 aaggacctggtgaagacggtcggaaaggttcagaggcgcagaacctttgaatgcaggccg 1259
||||||||||| | | || || ||||| | || ||||| ||||||||||||||||
Sbjct: 178 gaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcct 119
Query: 1260 cttcggg-atgcagtaaatagaccgccagccatggcagtgcatcttaaatccagtcaaga 1318
| |||| ||||||||||| || | ||| || ||||||||||||| || ||| | ||||
Sbjct: 118 -tacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaagccacttaaga 60
Query: 1319 tatcctctgtgatcgatccataaatccagccaatctcttttccccagtcggtctt 1373
|||||| |||| || ||||| ||||| ||||||||||||||||| || |||||
Sbjct: 59 tatcctaagtgactgaaccatatatccaaccaatctcttttccccattcagtctt 5
>gb|AY573572.1| Populus tremula x Populus tremuloides cellulose synthase (CesA2)
mRNA, complete cds
Length = 3991
Score = 85.7 bits (43), Expect = 1e-014
Identities = 109/131 (83%)
Strand = Plus / Minus
Query: 2425 ttgctgaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaacgta 2484
|||| |||||| ||||| || |||||||||||||||| ||||| | |||||||| |||
Sbjct: 1752 ttgcagaaagggacccactttcttgcaaattcagatgtctcagagatagcttcaaaagta 1693
Query: 2485 agcattgcagcaccatcatcagaaacatagcaggagaccttctcaaccggataatccaca 2544
||||| |||||||||||||| || |||||||| | || || || || |||||||| |||
Sbjct: 1692 agcatggcagcaccatcatctgagacatagcatgcaactttttcgactggataatctaca 1633
Query: 2545 gaaaggatgga 2555
| |||||||||
Sbjct: 1632 gcaaggatgga 1622
Score = 83.8 bits (42), Expect = 5e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 2116 taaacaaggcgaggcaactcatttccttccacatcacgaccaccactttggccaaggaat 2175
||||| || |||||||| |||||||| || |||||| || | ||| | || ||||||||
Sbjct: 2061 taaactagacgaggcaattcatttccctcaacatcatgaactccattatgaccaaggaag 2002
Query: 2176 acctgaatcattccaggatgatcgcgtacgttgtttccaggccaggggcttccatcttgc 2235
||||||||||||||||||||||| | || || || || ||||| || | ||||| |||
Sbjct: 2001 acctgaatcattccaggatgatctctgacattattccctggccatggagtgccatcctgc 1942
Query: 2236 attgtccatccttcctcaggaacctt 2261
|||||||| || ||||||||||||||
Sbjct: 1941 attgtccaaccatcctcaggaacctt 1916
Score = 77.8 bits (39), Expect = 3e-012
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 1282 cgccagccatggcagtgcatcttaaatccagtcaagatatcctctgtgatcgatccataa 1341
|||||||||||||| |||||||| || ||||| || |||||||| || | || ||||||
Sbjct: 2877 cgccagccatggcaatgcatcttgaagccagttaatatatcctcagtaacagagccataa 2818
Query: 1342 atccagccaatctcttttcccca 1364
||||| |||||||||||||||||
Sbjct: 2817 atccacccaatctcttttcccca 2795
Score = 77.8 bits (39), Expect = 3e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1747 gcatcataaccatatagtgcctgccgtctgaaaacacatccagtacccacataaatgggc 1806
|||||||| ||||| ||||| |||| || ||||| ||||||||||| ||||| || ||
Sbjct: 2430 gcatcatatccataaagtgcttgcctcctaaaaacgcatccagtaccaacatatatagga 2371
Query: 1807 ccttgaataccatccaaacctttcatgttgatatcaaaaaagacaac 1853
||||| || |||||||| |||||||| ||||||||||| || |||||
Sbjct: 2370 ccttgtatgccatccaatcctttcatattgatatcaaagaatacaac 2324
Score = 56.0 bits (28), Expect = 1e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 571 cccttgaggaacgggtacaggtggacgatcacccagaaggcgaagaagagcttcccgaac 630
||||||||||||||||| |||||||| || ||||| || || ||||| ||||| |||||
Sbjct: 3588 cccttgaggaacgggtaaaggtggacaattacccacaacgcaaagaatagcttaccgaag 3529
Query: 631 agggggccccacgactcgta 650
|| || ||||| | ||||||
Sbjct: 3528 agcggaccccaagtctcgta 3509
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 874 atgacccagaactgctcgttcctccaccagtc 905
||||||||||||||||| || |||||||||||
Sbjct: 3285 atgacccagaactgctcatttctccaccagtc 3254
>gb|CV228438.1|CV228438 WS01910.B21_B15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01910_B15 3', mRNA sequence
Length = 677
Score = 81.8 bits (41), Expect = 2e-013
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 2706 ccactttgggaactgatcaagaatccaggacatcgcaaaccagatttcacaga 2758
|||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 297 ccacttggggaactgatcaagaatccatgaaatcgcaaaccagatttcacaga 349
>gb|AY055724.2| Populus tremuloides cellulose synthase (CesA5) mRNA, complete cds
Length = 3532
Score = 81.8 bits (41), Expect = 2e-013
Identities = 176/221 (79%)
Strand = Plus / Minus
Query: 1780 acacatccagtacccacataaatgggcccttgaataccatccaaacctttcatgttgata 1839
|||||||||||||||||||| | || |||||||||||||||| ||| ||| ||| |||
Sbjct: 2127 acacatccagtacccacatagacaggtccttgaataccatccagacccctcaagtttata 2068
Query: 1840 tcaaaaaagacaacgttcctgttagcatatcgatcatgacggtcaataccaccaaacctc 1899
||||| || ||| || | || ||||||||||||| | |||||| ||| |||| ||
Sbjct: 2067 tcaaagaatacagtattgcgattggcatatcgatcattcctgtcaatgccatcaaatctt 2008
Query: 1900 tgagggaactgtacatagcacactttcttccccaccaaaggatccatcatgaaacacata 1959
|| || ||||| |||||||| || | ||||| | ||||||| ||||||||||||||
Sbjct: 2007 tgtggaaactgaacatagcagacatgtttcccaaggttaggatccttcatgaaacacata 1948
Query: 1960 gcctcttttatggccttgctattgttgatgtagtgatcaca 2000
|| ||| | | ||||||||| |||| ||||||||||||||
Sbjct: 1947 gcttctctcaaagccttgctaatgtttatgtagtgatcaca 1907
Score = 73.8 bits (37), Expect = 5e-011
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 2386 aagtaccactcaggagcacgaggctcgatattaaactttttgctgaaaggaacccatttc 2445
|||||||| || ||||| |||||||| || | |||| |||| ||| || |||||||||
Sbjct: 1521 aagtaccattctggagcccgaggctcaatgctgtacttcttgcagaagggcacccatttc 1462
Query: 2446 tttgcaaattcagatgtttcagacaatgcttcaaacgtaagcattgcagcaccatcatca 2505
| | ||| || || || |||||||| |||||||| || | |||||||||||||||||||
Sbjct: 1461 ctggaaaactctgaagtctcagacaaagcttcaaatgtcaacattgcagcaccatcatca 1402
Query: 2506 gaaacatagcaggagac 2522
|| |||||||| |||||
Sbjct: 1401 gagacatagcatgagac 1385
Score = 69.9 bits (35), Expect = 7e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 2158 ccactttggccaaggaatacctgaatcattccaggatgatcgcgtacgttgtttccaggc 2217
||||||||||| | ||| |||||||||||||| ||||| || | ||| |||||||||
Sbjct: 1749 ccactttggcccaagaaaacctgaatcattcctggatggtctctggtgttatttccaggc 1690
Query: 2218 caggggcttccatcttgcattgtccatccttcctcaggaaccttttg 2264
|| ||| | ||||||||||| |||||||||| ||||| ||||||||
Sbjct: 1689 catggggtcccatcttgcataatccatccttcttcaggcaccttttg 1643
Score = 61.9 bits (31), Expect = 2e-007
Identities = 133/167 (79%)
Strand = Plus / Minus
Query: 781 gccttcgacgtcacggtgaagctcgtgtcgatgccggcgagcaccttcagcaggccctgg 840
||||| ||||| || |||||| | ||||| ||||| || || || || |||| ||| |||
Sbjct: 3108 gccttggacgtaacagtgaagttggtgtcaatgccagcaagtactttgagcaagccttgg 3049
Query: 841 aacaccgcgaacagatgcgccgaaacgcctccgatgacccagaactgctcgttcctccac 900
|| || || || ||||| || ||||| || ||||||||||| ||||| || |||||||||
Sbjct: 3048 aaaacagcaaaaagatgggctgaaacaccaccgatgacccaaaactgttcattcctccac 2989
Query: 901 cagtcgtcgatggccacgccactccacctcatttccaggatgccggt 947
|| || || || | || |||||||||||||| |||| ||| |||||
Sbjct: 2988 cactcatcaatcccaacaccactccacctcatctccaagataccggt 2942
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 592 tggacgatcacccagaaggcgaagaagagctt 623
||||||||||||||||| |||||||| |||||
Sbjct: 3300 tggacgatcacccagaaagcgaagaaaagctt 3269
Score = 44.1 bits (22), Expect = 0.040
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2044 acacggaccagtgcattcatggcaccagccttcttgtg 2081
||||| || |||| ||||||||||||||| ||||||||
Sbjct: 1863 acacgaacaagtgaattcatggcaccagctttcttgtg 1826
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 428,341
Number of Sequences: 369679
Number of extensions: 428341
Number of successful extensions: 114969
Number of sequences better than 0.5: 149
Number of HSP's better than 0.5 without gapping: 148
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 114402
Number of HSP's gapped (non-prelim): 489
length of query: 3914
length of database: 203,408,664
effective HSP length: 20
effective length of query: 3894
effective length of database: 196,015,084
effective search space: 763282737096
effective search space used: 763282737096
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)