BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.1
(1175 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium... 198 3e-049
gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus tri... 198 3e-049
gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Popul... 198 3e-049
gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Popu... 198 3e-049
gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Popu... 198 3e-049
gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Popul... 186 1e-045
gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Popul... 182 2e-044
gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Popu... 182 2e-044
gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Popu... 182 2e-044
gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cD... 178 3e-043
gb|CX655372.1|CX655372 PO02034A05 Poplar SC cDNA library Po... 149 3e-034
gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii... 133 2e-029
gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library P... 115 4e-024
gb|CK106529.1|CK106529 UB23CPH06.5pR Populus active cambium... 107 1e-021
gb|DV465662.1|DV465662 MTUNUL1.P41.E01 NUL Populus fremonti... 101 6e-020
gb|CV272259.1|CV272259 WS0157.B21_C03 PTxN-IB-A-6 Populus t... 90 2e-016
gb|BU882175.1|BU882175 UM73TF03 Populus flower cDNA library... 88 9e-016
gb|CV225974.1|CV225974 WS0162.B21_O17 PT-DX-A-7 Populus tri... 88 9e-016
gb|CV235452.1|CV235452 WS0122.B21_D08 PT-GT-FL-A-3 Populus ... 88 9e-016
gb|CV259376.1|CV259376 WS02011.B21_D04 PTxN-IB-N-A-11 Popul... 88 9e-016
gb|CV264513.1|CV264513 WS02024.B21_L16 PTxN-IB-N-A-11 Popul... 88 9e-016
gb|CV268555.1|CV268555 WS0205.B21_M24 PTxN-IB-N-A-11 Populu... 88 9e-016
gb|CV269798.1|CV269798 WS0209.B21_E11 PTxN-IB-N-A-11 Populu... 88 9e-016
gb|BP930850.1|BP930850 BP930850 full-length enriched poplar... 88 9e-016
gb|DT511066.1|DT511066 WS02429.BR_H10 PTxD-ICC-N-A-14 Popul... 88 9e-016
gb|DT515569.1|DT515569 WS02427.B21_O20 PTxD-ICC-N-A-14 Popu... 88 9e-016
gb|DT515766.1|DT515766 WS02429.B21.1_H10 PTxD-ICC-N-A-14 Po... 88 9e-016
gb|DN496017.1|DN496017 P029C05.5pR Populus petioles cDNA li... 84 1e-014
gb|CV244248.1|CV244248 WS0254.B21_C07 PT-MB-N-A-15 Populus ... 80 2e-013
gb|DT479315.1|DT479315 WS02525.BR_H06 PT-MB-N-A-15 Populus ... 80 2e-013
gb|DT484450.1|DT484450 WS02525.B21_H06 PT-MB-N-A-15 Populus... 80 2e-013
gb|CV241642.1|CV241642 WS02512.B21_N02 PT-MB-N-A-15 Populus... 76 3e-012
gb|CV226366.1|CV226366 WS0164.B21_A24 PT-DX-A-7 Populus tri... 72 5e-011
gb|CV231159.1|CV231159 WS0193.B21_L09 PT-DX-N-A-10 Populus ... 72 5e-011
gb|CV231777.1|CV231777 WS0195.B21_I15 PT-DX-N-A-10 Populus ... 72 5e-011
gb|CV232955.1|CV232955 WS0199.B21_D04 PT-DX-N-A-10 Populus ... 72 5e-011
gb|CX184699.1|CX184699 D08_45-77_08.ab1 leaf inoculated wit... 72 5e-011
gb|BU886811.1|BU886811 R050H02 Populus root cDNA library Po... 68 8e-010
gb|CK092883.1|CK092883 G098P81.3pR Populus tension wood cDN... 64 1e-008
gb|AJ774281.1|AJ774281 AJ774281 Populus euphratica shoot 3-... 60 2e-007
gb|CN520824.1|CN520824 GQ0108.B3_C02 GQ010 Populus trichoca... 56 3e-006
gb|CV228902.1|CV228902 WS01911.B21_J11 PT-DX-N-A-10 Populus... 56 3e-006
gb|CV245200.1|CV245200 WS0256.B21_M02 PT-MB-N-A-15 Populus ... 56 3e-006
gb|CV251449.1|CV251449 WS0117.B21_A21 PT-P-FL-A-2 Populus t... 56 3e-006
gb|CX178094.1|CX178094 H02_45-74_16.ab1 leaf inoculated wit... 56 3e-006
gb|DN492094.1|DN492094 V046C01.3pR Populus male catkins cDN... 56 3e-006
gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus... 56 3e-006
gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populu... 56 3e-006
gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Popu... 56 3e-006
gb|DT518705.1|DT518705 WS02438.B21_P19 PTxD-ICC-N-A-14 Popu... 56 3e-006
gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated wit... 48 8e-004
gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDN... 48 8e-004
gb|CX187349.1|CX187349 B08_45-65_04.ab1 leaf inoculated wit... 44 0.012
gb|CX183717.1|CX183717 A07_45-28_01.ab1 leaf inoculated wit... 42 0.047
>gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 3', mRNA sequence
Length = 875
Score = 198 bits (100), Expect = 3e-049
Identities = 315/386 (81%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 795 tgccgtgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 736
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
|||| |||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 735 ccagctggtgcacatccgagtggctatattggtgaggatcctcgtggaattccaaacaat 676
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 675 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 616
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
| ||| ||| |||||| |||||| || ||||| || |||||||| ||||| || || |
Sbjct: 615 actgattattcaacaaaagacggtaccggggtacgtgattacattcatgttgtcgattta 556
Query: 246 gctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaa 305
|| || || || ||||||||||||| ||||| | || | ||| ||||| ||||||
Sbjct: 555 gcagatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaa 499
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
| ||||||| | ||||| || | ||||||||| || |||||||| ||| |||||||||
Sbjct: 498 gtgtacaacttgggaacagggaaaggtacatcagttctggagatggttgcagcatttgaa 439
Query: 366 aaggcttctgggaagaaaatacctct 391
||||| ||||| |||||||| |||||
Sbjct: 438 aaggcatctggaaagaaaattcctct 413
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 297 caatggaactgggccagcaagaacccttatggctatggatctcctgac 250
>gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_G06
3', mRNA sequence
Length = 918
Score = 198 bits (100), Expect = 3e-049
Identities = 315/386 (81%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 818 tgccgcgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 759
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 758 ccagttggtgcacatccaagtggctatattggtgaggatcctcgtggaattccaaacaat 699
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 698 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 639
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
| ||| ||| |||||| |||||| || ||||| || |||||||| ||||| || || |
Sbjct: 638 actgattatccaacaaaagacggtaccggggtacgtgattacattcatgttgtcgattta 579
Query: 246 gctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaa 305
|| || || || ||||||||||||| ||||| | || | ||| ||||| ||||||
Sbjct: 578 gcagatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaa 522
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
| ||||||| | ||||| || | ||||||||| || |||||||| || |||||||||
Sbjct: 521 gtgtacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagcatttgaa 462
Query: 366 aaggcttctgggaagaaaatacctct 391
||||| ||||| |||||||| |||||
Sbjct: 461 aaggcatctggaaagaaaattcctct 436
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 caatggaactgggccagcaagaacccttatggctatggatctcctgac 273
>gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_M06 3', mRNA sequence
Length = 922
Score = 198 bits (100), Expect = 3e-049
Identities = 315/386 (81%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 851 tgccgcgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 792
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 791 ccagttggtgcacatccaagtggctatattggtgaggatcctcgtggaattccaaacaat 732
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 731 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 672
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
| ||| ||| |||||| |||||| || ||||| || |||||||| ||||| || || |
Sbjct: 671 actgattatccaacaaaagacggtaccggggtacgtgattacattcatgttgtcgattta 612
Query: 246 gctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaa 305
|| || || || ||||||||||||| ||||| | || | ||| ||||| ||||||
Sbjct: 611 gcagatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaa 555
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
| ||||||| | ||||| || | ||||||||| || |||||||| || |||||||||
Sbjct: 554 gtgtacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagcatttgaa 495
Query: 366 aaggcttctgggaagaaaatacctct 391
||||| ||||| |||||||| |||||
Sbjct: 494 aaggcatctggaaagaaaattcctct 469
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 353 caatggaactgggccagcaagaacccttatggctatggatctcctgac 306
>gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 3', mRNA sequence
Length = 914
Score = 198 bits (100), Expect = 3e-049
Identities = 315/386 (81%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 809 tgccgcgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 750
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 749 ccagttggtgcacatccaagtggctatattggtgaggatcctcgtggaattccaaacaat 690
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 689 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 630
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
| ||| ||| |||||| |||||| || ||||| || |||||||| ||||| || || |
Sbjct: 629 actgattatccaacaaaagacggtaccggggtacgtgattacattcatgttgtcgattta 570
Query: 246 gctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaa 305
|| || || || ||||||||||||| ||||| | || | ||| ||||| ||||||
Sbjct: 569 gcagatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaa 513
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
| ||||||| | ||||| || | ||||||||| || |||||||| || |||||||||
Sbjct: 512 gtgtacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagcatttgaa 453
Query: 366 aaggcttctgggaagaaaatacctct 391
||||| ||||| |||||||| |||||
Sbjct: 452 aaggcatctggaaagaaaattcctct 427
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 311 caatggaactgggccagcaagaacccttatggctatggatctcctgac 264
>gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_G17 3', mRNA sequence
Length = 881
Score = 198 bits (100), Expect = 3e-049
Identities = 315/386 (81%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 806 tgccgcgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 747
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 746 ccagttggtgcacatccaagtggctatattggtgaggatcctcgtggaattccaaacaat 687
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 686 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 627
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
| ||| ||| |||||| |||||| || ||||| || |||||||| ||||| || || |
Sbjct: 626 actgattatccaacaaaagacggtaccggggtacgtgattacattcatgttgtcgattta 567
Query: 246 gctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaa 305
|| || || || ||||||||||||| ||||| | || | ||| ||||| ||||||
Sbjct: 566 gcagatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaa 510
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
| ||||||| | ||||| || | ||||||||| || |||||||| || |||||||||
Sbjct: 509 gtgtacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagcatttgaa 450
Query: 366 aaggcttctgggaagaaaatacctct 391
||||| ||||| |||||||| |||||
Sbjct: 449 aaggcatctggaaagaaaattcctct 424
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 308 caatggaactgggccagcaagaacccttatggctatggatctcctgac 261
>gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 5', mRNA sequence
Length = 833
Score = 186 bits (94), Expect = 1e-045
Identities = 196/230 (85%)
Strand = Plus / Plus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 554 tgccgcgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 613
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 614 ccagttggtgcacatccaagtggctatattggtgaggatcctcgtggaattccaaacaat 673
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 674 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 733
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgt 235
| ||| ||| |||||| |||||| || ||||| || |||||||| |||||
Sbjct: 734 actgattatccaacaaaagacggtaccggggtacgtgattacattcatgt 783
>gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 5', mRNA sequence
Length = 882
Score = 182 bits (92), Expect = 2e-044
Identities = 313/386 (81%), Gaps = 3/386 (0%)
Strand = Plus / Plus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 193 tgccgcgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 252
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| | | |||| ||||| || || |||||||| || |||
Sbjct: 253 ccagttggtgcacatccaagtggctgtattggtgaggatcctcgtggaattccaaataat 312
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 313 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 372
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
| ||| ||| |||||| |||||| || ||||| || |||||||| ||||| || || |
Sbjct: 373 actgattatccaacaaaagacggtaccggggtacgtgattacattcatgttgtcgattta 432
Query: 246 gctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaa 305
|| || || || ||||||||||||| ||||| | || | ||| ||||| ||||||
Sbjct: 433 gcagatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaa 489
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
| ||||||| | ||||| || | ||||||||| || |||||||| || |||||||||
Sbjct: 490 gtgtacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagcatttgaa 549
Query: 366 aaggcttctgggaagaaaatacctct 391
||||| ||||| |||||||| |||||
Sbjct: 550 aaggcatctggaaagaaaattcctct 575
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 691 caatggaactgggccagcaagaacccttatggctatggatctcctgac 738
>gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 3', mRNA sequence
Length = 922
Score = 182 bits (92), Expect = 2e-044
Identities = 313/386 (81%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 779 tgccgcgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 720
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| | | |||| ||||| || || |||||||| || |||
Sbjct: 719 ccagttggtgcacatccaagtggctgtattggtgaggatcctcgtggaattccaaataat 660
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 659 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 600
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
| ||| ||| |||||| |||||| || ||||| || |||||||| ||||| || || |
Sbjct: 599 actgattatccaacaaaagacggtaccggggtacgtgattacattcatgttgtcgattta 540
Query: 246 gctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaa 305
|| || || || ||||||||||||| ||||| | || | ||| ||||| ||||||
Sbjct: 539 gcagatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaa 483
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
| ||||||| | ||||| || | ||||||||| || |||||||| || |||||||||
Sbjct: 482 gtgtacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagcatttgaa 423
Query: 366 aaggcttctgggaagaaaatacctct 391
||||| ||||| |||||||| |||||
Sbjct: 422 aaggcatctggaaagaaaattcctct 397
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 281 caatggaactgggccagcaagaacccttatggctatggatctcctgac 234
>gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_J11 3', mRNA sequence
Length = 794
Score = 182 bits (92), Expect = 2e-044
Identities = 313/386 (81%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 791 tgccgcgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 732
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| | | |||| ||||| || || |||||||| || |||
Sbjct: 731 ccagttggtgcacatccaagtggctgtattggtgaggatcctcgtggaattccaaataat 672
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 671 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 612
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
| ||| ||| |||||| |||||| || ||||| || |||||||| ||||| || || |
Sbjct: 611 actgattatccaacaaaagacggtaccggggtacgtgattacattcatgttgtcgattta 552
Query: 246 gctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaa 305
|| || || || ||||||||||||| ||||| | || | ||| ||||| ||||||
Sbjct: 551 gcagatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaa 495
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
| ||||||| | ||||| || | ||||||||| || |||||||| || |||||||||
Sbjct: 494 gtgtacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagcatttgaa 435
Query: 366 aaggcttctgggaagaaaatacctct 391
||||| ||||| |||||||| |||||
Sbjct: 434 aaggcatctggaaagaaaattcctct 409
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 293 caatggaactgggccagcaagaacccttatggctatggatctcctgac 246
>gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 473
Score = 178 bits (90), Expect = 3e-043
Identities = 195/230 (84%)
Strand = Plus / Plus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||
Sbjct: 137 tgccgtgatatctacagttcagattctgaatggaagatcatattactcagatactttaat 196
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
|||| |||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 197 ccagctggtgcacatccgagtggctatattggtgaggatcctcgtggaattccaaacaat 256
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|| ||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||
Sbjct: 257 ctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttgga 316
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgt 235
| ||| ||| |||||| |||||| || ||||| || |||||||| |||||
Sbjct: 317 actgattattcaacaaaagacggtaccggggtacgtgattacattcatgt 366
>gb|CX655372.1|CX655372 PO02034A05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02034A05 5', mRNA sequence
Length = 335
Score = 149 bits (75), Expect = 3e-034
Identities = 120/135 (88%)
Strand = Plus / Plus
Query: 12 gatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaatccagtt 71
||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct: 83 gatatctaccgttcagactctgaatggaagatcattttgcttacatacttcaatccagtt 142
Query: 72 ggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaatcttatg 131
||||| ||||| ||||| || |||||||||| ||||| |||||||| |||||||| |||
Sbjct: 143 ggtgcacatccaagtggtcatattggcgaggatccacgtggaattccaaacaatctcatg 202
Query: 132 ccctatgttcagcaa 146
|||||||| ||||||
Sbjct: 203 ccctatgtgcagcaa 217
>gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 593
Score = 133 bits (67), Expect = 2e-029
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| ||||||| || ||||||||||||| ||||| || ||||| |||
Sbjct: 443 tgccgcgatatctacacttcagattctaaatggaagatcatattactcagatactttaat 502
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 503 ccagttggtgcacatccgagtggctatattggtgaggatcctcgtggaattccaaacaat 562
Query: 126 cttatgccctatgttcagcaagttgcggttg 156
|| ||||||||||| ||||||||||| ||||
Sbjct: 563 ctcatgccctatgtgcagcaagttgctgttg 593
>gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 527
Score = 115 bits (58), Expect = 4e-024
Identities = 246/308 (79%), Gaps = 3/308 (0%)
Strand = Plus / Plus
Query: 84 agtggatatcttggcgaggacccacgaggaattcccaacaatcttatgccctatgttcag 143
||||| ||| |||| ||||| || || |||||||| |||||||| ||||||||||| |||
Sbjct: 9 agtggctatattggtgaggatcctcgtggaattccaaacaatctcatgccctatgtgcag 68
Query: 144 caagttgcggttggtaggaggccagctctgacagttttaggaaatgactatgcaacaaga 203
|||||||| ||||| |||||||| ||| |||||||| |||| ||| ||| |||||| |
Sbjct: 69 caagttgctgttggcaggaggcctcatctaacagtttttggaactgattattcaacaaaa 128
Query: 204 gacgggactggggtccgagattacatccatgtggttgaccttgctgacggacatattgct 263
||||| || ||||| || |||||||| ||||| || || | || || || || ||||||
Sbjct: 129 gacggtaccggggtacgtgattacattcatgttgtcgatttagcagatgggcacattgct 188
Query: 264 gcattgcagaagctttttgagaactctagcatagggtgtgaagcgtacaaccttggaacc 323
||||||| ||||| | || | ||| ||||| ||||||| ||||||| | |||||
Sbjct: 189 gcattgcgtaagctctctg---aagctaatataggttgtgaagtgtacaacttgggaaca 245
Query: 324 ggaagaggtacatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaa 383
|| | ||||||||| || |||||||| ||| ||||||||| ||||| ||||| ||| ||
Sbjct: 246 gggaaaggtacatcagttctggagatggttgcagcatttgaaaaggcatctggaaaggaa 305
Query: 384 atacctct 391
|| |||||
Sbjct: 306 attcctct 313
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 429 caatggaactgggccagcaagaacccttatggctatggatctcctgac 476
>gb|CK106529.1|CK106529 UB23CPH06.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 5', mRNA sequence
Length = 464
Score = 107 bits (54), Expect = 1e-021
Identities = 139/162 (85%), Gaps = 4/162 (2%)
Strand = Plus / Plus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| || |||||| ||||||||| ||||| ||||| || ||||| |||
Sbjct: 133 tgccgtgatatctacagt-cagatc-tgaatggaa-atcatattactcagatactttaat 189
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
|||| |||||| ||||| ||||| ||| |||| ||||| || || |||||||| ||||||
Sbjct: 190 ccagctggtgcacatccgagtggctatattggtgaggatcctcgtggaattccaaacaat 249
Query: 126 cttatgccctatgttcagcaagttgcg-gttggtaggaggcc 166
|| ||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 250 ctcatgccctatgtgcagcaagttgcgtgttggcaggaggcc 291
>gb|DV465662.1|DV465662 MTUNUL1.P41.E01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 853
Score = 101 bits (51), Expect = 6e-020
Identities = 123/146 (84%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||||||| ||||||| || ||||||||||||| ||||| || ||||| |||
Sbjct: 707 tgccgcgatatctacacttcagattctaaatggaagatcatattactcagatactttaat 766
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
||||||||||| ||||| ||||| ||| |||| ||||| || || |||||| | || ||
Sbjct: 767 ccagttggtgcacatccgagtggctatattggtgaggatcctcgtggaatt-caaancat 825
Query: 126 cttatgccctatgttcagcaagttgc 151
|| ||||||||||| |||||||||||
Sbjct: 826 ctcatgccctatgtgcagcaagttgc 851
>gb|CV272259.1|CV272259 WS0157.B21_C03 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_C03 3', mRNA sequence
Length = 696
Score = 89.7 bits (45), Expect = 2e-016
Identities = 209/263 (79%), Gaps = 3/263 (1%)
Strand = Plus / Minus
Query: 129 atgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttaggaaat 188
||||||||||| ||||||||||| ||||| |||||||| ||| |||||||| |||| |
Sbjct: 695 atgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtttttggaact 636
Query: 189 gactatgcaacaagagacgggactggggtccgagattacatccatgtggttgaccttgct 248
|| ||| |||||| |||||| || ||||| || |||||||| ||||| || || | ||
Sbjct: 635 gattatccaacaaaagacggtaccggggtacgtgattacattcatgttgtcgatttagca 576
Query: 249 gacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaagcg 308
|| || || ||||||||||||| ||||| | || | ||| ||||| ||||||| |
Sbjct: 575 gatgggcacattgctgcattgcgtaagctctctg---aagctaatataggttgtgaagtg 519
Query: 309 tacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgagaag 368
|||||| | ||||| || | ||||||||| || |||||||| || ||||||||| |||
Sbjct: 518 tacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagcatttgaaaag 459
Query: 369 gcttctgggaagaaaatacctct 391
|| ||||| |||||||| |||||
Sbjct: 458 gcatctggaaagaaaattcctct 436
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 caatggaactgggccagcaagaacccttatggctatggatctcctgac 273
>gb|BU882175.1|BU882175 UM73TF03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 571
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 212 caatggaactgggccagcaagaacccttatggctatggatctcctgac 259
>gb|CV225974.1|CV225974 WS0162.B21_O17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_O17
3', mRNA sequence
Length = 504
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 253 caatggaactgggccagcaagaacccttatggctatggatctcctgac 300
>gb|CV235452.1|CV235452 WS0122.B21_D08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_D08 3', mRNA sequence
Length = 652
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 365 caatggaactgggccagcaagaacccttatggctatggatctcctgac 318
>gb|CV259376.1|CV259376 WS02011.B21_D04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_D04 3', mRNA sequence
Length = 762
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 660 caatggaactgggccagcaagaacccttatggctatggatctcctgac 613
>gb|CV264513.1|CV264513 WS02024.B21_L16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02024_L16 3', mRNA sequence
Length = 668
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 544 caatggaactgggccagcaagaacccttatggctatggatctcctgac 497
>gb|CV268555.1|CV268555 WS0205.B21_M24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_M24 3', mRNA sequence
Length = 458
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| |||||||| || ||||| |||||||| | || ||||||||||||||| |||||
Sbjct: 291 tggaaggcaaaatatggcattgatgagatgtgtagggatcaatggaactgggccggcaag 232
Query: 528 aacccttatggctatggatc 547
||||||||||||||||||||
Sbjct: 231 aacccttatggctatggatc 212
>gb|CV269798.1|CV269798 WS0209.B21_E11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0209_E11 3', mRNA sequence
Length = 601
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 292 caatggaactgggccagcaagaacccttatggctatggatctcctgac 245
>gb|BP930850.1|BP930850 BP930850 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-015_L21.r 3', mRNA sequence
Length = 574
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| |||||||| || ||||| |||||||| | || ||||||||||||||| |||||
Sbjct: 298 tggaaggcaaaatatggcattgatgagatgtgtagggatcaatggaactgggccggcaag 239
Query: 528 aacccttatggctatggatc 547
||||||||||||||||||||
Sbjct: 238 aacccttatggctatggatc 219
>gb|DT511066.1|DT511066 WS02429.BR_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_H10 5', mRNA sequence
Length = 465
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 154 caatggaactgggccagcaagaacccttatggctatggatctcctgac 201
>gb|DT515569.1|DT515569 WS02427.B21_O20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_O20 3', mRNA sequence
Length = 495
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 311 caatggaactgggccagcaagaacccttatggctatggatctcctgac 264
>gb|DT515766.1|DT515766 WS02429.B21.1_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_H10 3', mRNA sequence
Length = 465
Score = 87.7 bits (44), Expect = 9e-016
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 312 caatggaactgggccagcaagaacccttatggctatggatctcctgac 265
>gb|DN496017.1|DN496017 P029C05.5pR Populus petioles cDNA library Populus tremula cDNA
clone P029C05 5', mRNA sequence
Length = 877
Score = 83.8 bits (42), Expect = 1e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 15 atctaccgttcagatcctgaatggaagatcattttacttaggtacttcaatccagttggt 74
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 792 atctaccgttcagactctgaatggaagatcattttgctttaatacttcaatccagttggt 851
Query: 75 gctcatcctagtgg 88
|| ||||| |||||
Sbjct: 852 gcacatccaagtgg 865
>gb|CV244248.1|CV244248 WS0254.B21_C07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_C07 3', mRNA sequence
Length = 582
Score = 79.8 bits (40), Expect = 2e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| |||||||| || ||||| || ||||| | || ||||||||||||||| |||||
Sbjct: 286 tggaaggcaaaatatggcattgatgaaatgtgtagggatcaatggaactgggccggcaag 227
Query: 528 aacccttatggctatggatc 547
||||||||||||||||||||
Sbjct: 226 aacccttatggctatggatc 207
>gb|DT479315.1|DT479315 WS02525.BR_H06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_H06 5', mRNA sequence
Length = 431
Score = 79.8 bits (40), Expect = 2e-013
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| |||||||| || ||||| || ||||| | || ||||||||||||||| |||||
Sbjct: 146 tggaaggcaaaatatggcattgatgaaatgtgtagggatcaatggaactgggccggcaag 205
Query: 528 aacccttatggctatggatc 547
||||||||||||||||||||
Sbjct: 206 aacccttatggctatggatc 225
>gb|DT484450.1|DT484450 WS02525.B21_H06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_H06 3', mRNA sequence
Length = 431
Score = 79.8 bits (40), Expect = 2e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
||||| |||||||| || ||||| || ||||| | || ||||||||||||||| |||||
Sbjct: 286 tggaaggcaaaatatggcattgatgaaatgtgtagggatcaatggaactgggccggcaag 227
Query: 528 aacccttatggctatggatc 547
||||||||||||||||||||
Sbjct: 226 aacccttatggctatggatc 207
>gb|CV241642.1|CV241642 WS02512.B21_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_N02 3', mRNA sequence
Length = 735
Score = 75.8 bits (38), Expect = 3e-012
Identities = 214/272 (78%), Gaps = 3/272 (1%)
Strand = Plus / Minus
Query: 120 aacaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtt 179
|||||||| ||||||||||| ||||||||||| ||||| |||||||| ||| ||||||
Sbjct: 735 aacaatctcatgccctatgtgcagcaagttgctgttggcaggaggcctcatctaacagtt 676
Query: 180 ttaggaaatgactatgcaacaagagacgggactggggtccgagattacatccatgtggtt 239
|| || ||| ||| |||||| || ||| || ||||| || |||||||| ||||| ||
Sbjct: 675 ttgtgatctgattatccaacaaaagtcggtaccggggtacgtgattacattcatgttgtc 616
Query: 240 gaccttgctgacggacatattgctgcattgcagaagctttttgagaactctagcataggg 299
|| | || || || || ||||||||||||| ||||| | || | ||| |||||
Sbjct: 615 gatttagcagatggccacattgctgcattgcgtaagctctctg---aagctaatataggt 559
Query: 300 tgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagca 359
||||||| ||||||| | ||||| || | ||||||||| || |||||||| || ||||
Sbjct: 558 tgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtcgcagca 499
Query: 360 tttgagaaggcttctgggaagaaaatacctct 391
||||| ||||| ||||| |||||||| |||||
Sbjct: 498 tttgaaaaggcatctggaaagaaaattcctct 467
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 350 caatggaactgggccagcaagaacctttatggatatggatctcctgac 303
>gb|CV226366.1|CV226366 WS0164.B21_A24 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_A24
3', mRNA sequence
Length = 795
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
|||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 681 caatggaaatgggccagcaagaacccttacggctatggatctcctgac 634
>gb|CV231159.1|CV231159 WS0193.B21_L09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_L09 3', mRNA sequence
Length = 579
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
|||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 371 caatggaaatgggccagcaagaacccttacggctatggatctcctgac 324
>gb|CV231777.1|CV231777 WS0195.B21_I15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_I15 3', mRNA sequence
Length = 579
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
|||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 371 caatggaaatgggccagcaagaacccttacggctatggatctcctgac 324
>gb|CV232955.1|CV232955 WS0199.B21_D04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_D04 3', mRNA sequence
Length = 542
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
|||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 302 caatggaaatgggccagcaagaacccttacggctatggatctcctgac 349
>gb|CX184699.1|CX184699 D08_45-77_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 477
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgac 554
|||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 105 caatggaaatgggccagcaagaacccttacggctatggatctcctgac 152
>gb|BU886811.1|BU886811 R050H02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 303
Score = 67.9 bits (34), Expect = 8e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 517 gggccagcaagaacccttatggctatggatcacctgac 554
||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 gggccagcaagaacccttatggctatggatctcctgac 38
>gb|CK092883.1|CK092883 G098P81.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G098P81 3', mRNA sequence
Length = 745
Score = 63.9 bits (32), Expect = 1e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||||||||| || ||| |||||| |||||||||||| | || ||||||||| | |||
Sbjct: 430 aaagcagagagagaacttggctggaaggcaaaatacggtgtcgaggagatgtgcagggac 371
Query: 507 caatggaactgggccagcaa 526
|||||||| ||||| |||||
Sbjct: 370 caatggaaatgggcaagcaa 351
>gb|AJ774281.1|AJ774281 AJ774281 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300015C02F1, mRNA sequence
Length = 537
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 10 gggatatctaccgttcagatcctgaatggaagatcattttacttag 55
||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 489 gggatatctaccgttcagactctggaaggaagatcattttacttag 534
>gb|CN520824.1|CN520824 GQ0108.B3_C02 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_C02 5', mRNA sequence
Length = 603
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 286 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 345
Score = 40.1 bits (20), Expect = 0.19
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 306 gcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgag 365
||||||||||| || || ||| | || ||||||||||| || || || | ||||||||
Sbjct: 125 gcgtacaacctggggactggatgtggaacatctgtgcttgaaatggtcactgcatttgaa 184
Query: 366 aaggcttctgggaagaaaat 385
|| |||||||| ||||||||
Sbjct: 185 aaagcttctggcaagaaaat 204
>gb|CV228902.1|CV228902 WS01911.B21_J11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_J11 3', mRNA sequence
Length = 521
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 416 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 357
>gb|CV245200.1|CV245200 WS0256.B21_M02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_M02 3', mRNA sequence
Length = 613
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 355 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 296
>gb|CV251449.1|CV251449 WS0117.B21_A21 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_A21 3', mRNA sequence
Length = 616
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 335 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 276
>gb|CX178094.1|CX178094 H02_45-74_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 495
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 370 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 311
>gb|DN492094.1|DN492094 V046C01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V046C01 3', mRNA sequence
Length = 753
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 318 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 259
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 41 gatcattttacttaggtacttcaa 64
|||||||||| |||||||||||||
Sbjct: 744 gatcattttatttaggtacttcaa 721
>gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_N20 3', mRNA sequence
Length = 807
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 337 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 278
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 33 gaatggaagatcattttacttaggtacttcaa 64
||||||| |||||||||||||||||||||||
Sbjct: 771 gaatggagtatcattttacttaggtacttcaa 740
>gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_H02 3', mRNA sequence
Length = 935
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 367 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 308
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 33 gaatggaagatcattttacttaggtacttcaa 64
||||||| |||||||||||||||||||||||
Sbjct: 801 gaatggagtatcattttacttaggtacttcaa 770
>gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_L17 3', mRNA sequence
Length = 925
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 355 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 296
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 33 gaatggaagatcattttacttaggtacttcaa 64
||||||| |||||||||||||||||||||||
Sbjct: 790 gaatggagtatcattttacttaggtacttcaa 759
>gb|DT518705.1|DT518705 WS02438.B21_P19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_P19 3', mRNA sequence
Length = 875
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 467 ctggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaa 526
|||||| |||||||||||| | || ||||||||| | ||||||||||| ||||| |||||
Sbjct: 355 ctggaaggcaaaatacggtgtcgaggagatgtgcagggaccaatggaaatgggcaagcaa 296
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,195
Number of Sequences: 369679
Number of extensions: 125195
Number of successful extensions: 34527
Number of sequences better than 0.5: 54
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34408
Number of HSP's gapped (non-prelim): 118
length of query: 1175
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1156
effective length of database: 196,384,763
effective search space: 227020786028
effective search space used: 227020786028
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)