BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276562.2.1
(1286 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU867659.1|BU867659 M102G11 Populus flower cDNA library ... 44 0.013
gb|CK090634.1|CK090634 F017P45.3pR Populus flower cDNA libr... 44 0.013
gb|CK101019.1|CK101019 F017P45.5pR Populus flower cDNA libr... 44 0.013
gb|BU813114.1|BU813114 N005D10 Populus bark cDNA library Po... 40 0.21
gb|BU814331.1|BU814331 N028A02 Populus bark cDNA library Po... 40 0.21
gb|BU819558.1|BU819558 UA44BPH10 Populus tremula cambium cD... 40 0.21
gb|BU873784.1|BU873784 Q059H07 Populus flower cDNA library ... 40 0.21
gb|BU874478.1|BU874478 Q068E05 Populus flower cDNA library ... 40 0.21
gb|BU875054.1|BU875054 V001G12 Populus flower cDNA library ... 40 0.21
gb|BU878475.1|BU878475 V047G07 Populus flower cDNA library ... 40 0.21
gb|BU886483.1|BU886483 R046B10 Populus root cDNA library Po... 40 0.21
gb|BU888278.1|BU888278 P005H09 Populus petioles cDNA librar... 40 0.21
gb|BU891166.1|BU891166 P046G08 Populus petioles cDNA librar... 40 0.21
gb|BU893107.1|BU893107 P073D09 Populus petioles cDNA librar... 40 0.21
gb|BU893488.1|BU893488 P078D08 Populus petioles cDNA librar... 40 0.21
gb|CA926693.1|CA926693 MTU6CR.P18.B01 Aspen root cDNA Libra... 40 0.21
gb|CB240287.1|CB240287 PopSC00265 Poplar SC cDNA library Po... 40 0.21
gb|CF233072.1|CF233072 PtaJXO0019A5A0501 Poplar cDNA librar... 40 0.21
gb|CF235386.1|CF235386 PtaJXT0022C11C1105 Poplar cDNA libra... 40 0.21
gb|CK095627.1|CK095627 UA17CPD12.3pR Populus dormant cambiu... 40 0.21
gb|CK096113.1|CK096113 UA44BPH10.3pR Populus dormant cambiu... 40 0.21
gb|CK112082.1|CK112082 R027A05 Populus root cDNA library Po... 40 0.21
gb|CN523718.1|CN523718 GQ015M11.T3_F09 GQ015 Populus tricho... 40 0.21
gb|CK318898.1|CK318898 X9P04f01 Populus stem seasonal libra... 40 0.21
gb|CK319296.1|CK319296 X9P09b08 Populus stem seasonal libra... 40 0.21
gb|CV237896.1|CV237896 WS0124.B21_H24 PT-GT-FL-A-3 Populus ... 40 0.21
gb|CV241090.1|CV241090 WS02511.B21_D02 PT-MB-N-A-15 Populus... 40 0.21
gb|CV246248.1|CV246248 WS0111.B21_M07 PT-P-FL-A-2 Populus t... 40 0.21
gb|CV249062.1|CV249062 WS01122.B21_O06 PT-P-FL-A-2 Populus ... 40 0.21
gb|CV249217.1|CV249217 WS01123.B21_G12 PT-P-FL-A-2 Populus ... 40 0.21
gb|CV253527.1|CV253527 WS0222.B21_D12 PTxD-ICC-A-12 Populus... 40 0.21
gb|CV253840.1|CV253840 WS0223.B21_D01 PTxD-ICC-A-12 Populus... 40 0.21
gb|CV256657.1|CV256657 WS0244.B21_H08 PTxD-ICC-N-A-14 Popul... 40 0.21
gb|CV257255.1|CV257255 WS0246.B21_B23 PTxD-ICC-N-A-14 Popul... 40 0.21
gb|CV272445.1|CV272445 WS0157.B21_K22 PTxN-IB-A-6 Populus t... 40 0.21
gb|CX173928.1|CX173928 G04_69-114_14.ab1 leaf inoculated wi... 40 0.21
gb|DN492163.1|DN492163 V051E09.3pR Populus male catkins cDN... 40 0.21
gb|DN495734.1|DN495734 P004C07.5pR Populus petioles cDNA li... 40 0.21
gb|DN502105.1|DN502105 V051E09.5pR Populus male catkins cDN... 40 0.21
gb|DT471420.1|DT471420 WS01213.BR_M09 PT-GT-FL-A-3 Populus ... 40 0.21
gb|DT473289.1|DT473289 WS01229.BR_D01 PT-GT-FL-A-3 Populus ... 40 0.21
gb|DT476330.1|DT476330 WS01229.B21_D01 PT-GT-FL-A-3 Populus... 40 0.21
gb|DT478769.1|DT478769 WS02523.BR_L24 PT-MB-N-A-15 Populus ... 40 0.21
gb|DT483851.1|DT483851 WS02523.B21_L24 PT-MB-N-A-15 Populus... 40 0.21
gb|DT496255.1|DT496255 WS01122.BR_O06 PT-P-FL-A-2 Populus t... 40 0.21
gb|DT496435.1|DT496435 WS01123.BR_G12 PT-P-FL-A-2 Populus t... 40 0.21
gb|DT508298.1|DT508298 WS02420.BR_J12 PTxD-ICC-N-A-14 Popul... 40 0.21
gb|DT508672.1|DT508672 WS02421.BR_J23 PTxD-ICC-N-A-14 Popul... 40 0.21
gb|DT510504.1|DT510504 WS02426.BR_L21 PTxD-ICC-N-A-14 Popul... 40 0.21
gb|DT512911.1|DT512911 WS02420.B21_J12 PTxD-ICC-N-A-14 Popu... 40 0.21
gb|DT513277.1|DT513277 WS02421.B21_J23 PTxD-ICC-N-A-14 Popu... 40 0.21
gb|DT515135.1|DT515135 WS02426.B21_L21 PTxD-ICC-N-A-14 Popu... 40 0.21
gb|DT518007.1|DT518007 WS02435.B21_O23 PTxD-ICC-N-A-14 Popu... 40 0.21
gb|DT518475.1|DT518475 WS02438.B21_E07 PTxD-ICC-N-A-14 Popu... 40 0.21
gb|DV465070.1|DV465070 MTUNUL1.P34.F03 NUL Populus fremonti... 40 0.21
gb|DV465252.1|DV465252 MTUNUL1.P37.B08 NUL Populus fremonti... 40 0.21
gb|DV466707.1|DV466707 MTUNUL1.P9.C01 NUL Populus fremontii... 40 0.21
>gb|BU867659.1|BU867659 M102G11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 728
Score = 44.1 bits (22), Expect = 0.013
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 560 ttgctccgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatc 619
||||||| ||| || ||||| || |||||||| |||||||| ||||| || | ||||
Sbjct: 665 ttgctccttgtagtcagaatcctgatgatctcttcatcactataagctttatctgagatc 606
Query: 620 ttctcatgaagtat 633
||||||||||||||
Sbjct: 605 ttctcatgaagtat 592
>gb|CK090634.1|CK090634 F017P45.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F017P45 3', mRNA sequence
Length = 452
Score = 44.1 bits (22), Expect = 0.013
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 560 ttgctccgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatc 619
||||||| ||| || ||||| || |||||||| |||||||| ||||| || | ||||
Sbjct: 190 ttgctccttgtagtcagaatcctgatgatctcttcatcactataagctttatctgagatc 131
Query: 620 ttctcatgaagtat 633
||||||||||||||
Sbjct: 130 ttctcatgaagtat 117
>gb|CK101019.1|CK101019 F017P45.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F017P45 5', mRNA sequence
Length = 452
Score = 44.1 bits (22), Expect = 0.013
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 560 ttgctccgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatc 619
||||||| ||| || ||||| || |||||||| |||||||| ||||| || | ||||
Sbjct: 262 ttgctccttgtagtcagaatcctgatgatctcttcatcactataagctttatctgagatc 321
Query: 620 ttctcatgaagtat 633
||||||||||||||
Sbjct: 322 ttctcatgaagtat 335
>gb|BU813114.1|BU813114 N005D10 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 408 tcctcatcactgtaagcctt 389
>gb|BU814331.1|BU814331 N028A02 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 578 tcctcatcactgtaagcctt 559
>gb|BU819558.1|BU819558 UA44BPH10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 201 tcctcatcactgtaagcctt 182
>gb|BU873784.1|BU873784 Q059H07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 671 tcctcatcactgtaagcctt 652
>gb|BU874478.1|BU874478 Q068E05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 652 tcctcatcactgtaagcctt 633
>gb|BU875054.1|BU875054 V001G12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 74 tcctcatcactgtaagcctt 55
>gb|BU878475.1|BU878475 V047G07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 719
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 602 tcctcatcactgtaagcctt 583
>gb|BU886483.1|BU886483 R046B10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 53 tcctcatcactgtaagcctt 34
>gb|BU888278.1|BU888278 P005H09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 664 tcctcatcactgtaagcctt 645
>gb|BU891166.1|BU891166 P046G08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 361 tcctcatcactgtaagcctt 342
>gb|BU893107.1|BU893107 P073D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 666 tcctcatcactgtaagcctt 647
>gb|BU893488.1|BU893488 P078D08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 474
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 360 tcctcatcactgtaagcctt 341
>gb|CA926693.1|CA926693 MTU6CR.P18.B01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 415
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 169 tcctcatcactgtaagcctt 188
>gb|CB240287.1|CB240287 PopSC00265 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00265, mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 291 tcctcatcactgtaagcctt 272
>gb|CF233072.1|CF233072 PtaJXO0019A5A0501 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.21
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 575 agaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtat 633
||||| || ||||| || |||||||||||||| || | ||||||||||||||||||
Sbjct: 643 agaatcctgatgatttcatcatcactgtaagctttatntgagatcttctcatgaagtat 585
>gb|CF235386.1|CF235386 PtaJXT0022C11C1105 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.21
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 575 agaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtat 633
||||| || ||||| || |||||||||||||| || | ||||||||||||||||||
Sbjct: 652 agaatcctgatgatttcatcatcactgtaagctttatntgagatcttctcatgaagtat 594
>gb|CK095627.1|CK095627 UA17CPD12.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA17CPD12 3', mRNA sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 517 tcctcatcactgtaagcctt 536
>gb|CK096113.1|CK096113 UA44BPH10.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA44BPH10 3', mRNA sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 567 tcctcatcactgtaagcctt 586
>gb|CK112082.1|CK112082 R027A05 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R027A05 5', mRNA sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 668 tcctcatcactgtaagcctt 649
>gb|CN523718.1|CN523718 GQ015M11.T3_F09 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M11_F09 5', mRNA sequence
Length = 796
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 434 tcctcatcactgtaagcctt 415
>gb|CK318898.1|CK318898 X9P04f01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 645 tcctcatcactgtaagcctt 626
>gb|CK319296.1|CK319296 X9P09b08 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 95 tcctcatcactgtaagcctt 76
>gb|CV237896.1|CV237896 WS0124.B21_H24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0124_H24 3', mRNA sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 596 tcctcatcactgtaagcctt 615
>gb|CV241090.1|CV241090 WS02511.B21_D02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_D02 3', mRNA sequence
Length = 761
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 600 tcctcatcactgtaagcctt 619
>gb|CV246248.1|CV246248 WS0111.B21_M07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_M07 3', mRNA sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 594 tcctcatcactgtaagcctt 613
>gb|CV249062.1|CV249062 WS01122.B21_O06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_O06 3', mRNA sequence
Length = 719
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 594 tcctcatcactgtaagcctt 613
>gb|CV249217.1|CV249217 WS01123.B21_G12 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01123_G12 3', mRNA sequence
Length = 734
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 594 tcctcatcactgtaagcctt 613
>gb|CV253527.1|CV253527 WS0222.B21_D12 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0222_D12 3', mRNA sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 596 tcctcatcactgtaagcctt 615
>gb|CV253840.1|CV253840 WS0223.B21_D01 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_D01 3', mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 600 tcctcatcactgtaagcctt 619
>gb|CV256657.1|CV256657 WS0244.B21_H08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_H08 3', mRNA sequence
Length = 940
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 598 tcctcatcactgtaagcctt 617
>gb|CV257255.1|CV257255 WS0246.B21_B23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_B23 3', mRNA sequence
Length = 719
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 603 tcctcatcactgtaagcctt 622
>gb|CV272445.1|CV272445 WS0157.B21_K22 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_K22 3', mRNA sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 608 tcctcatcactgtaagcctt 627
>gb|CX173928.1|CX173928 G04_69-114_14.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgctaatgcaggctacgtgt 96
||||||||||||||||||||
Sbjct: 352 tgctaatgcaggctacgtgt 371
>gb|DN492163.1|DN492163 V051E09.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V051E09 3', mRNA sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 587 tcctcatcactgtaagcctt 606
>gb|DN495734.1|DN495734 P004C07.5pR Populus petioles cDNA library Populus tremula cDNA
clone P004C07 5', mRNA sequence
Length = 785
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 647 tcctcatcactgtaagcctt 628
>gb|DN502105.1|DN502105 V051E09.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V051E09 5', mRNA sequence
Length = 860
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 642 tcctcatcactgtaagcctt 623
>gb|DT471420.1|DT471420 WS01213.BR_M09 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_M09 5', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 472 tcctcatcactgtaagcctt 453
>gb|DT473289.1|DT473289 WS01229.BR_D01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_D01 5', mRNA sequence
Length = 934
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 661 tcctcatcactgtaagcctt 642
>gb|DT476330.1|DT476330 WS01229.B21_D01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_D01 3', mRNA sequence
Length = 792
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 594 tcctcatcactgtaagcctt 613
>gb|DT478769.1|DT478769 WS02523.BR_L24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_L24 5', mRNA sequence
Length = 804
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgctaatgcaggctacgtgt 96
||||||||||||||||||||
Sbjct: 360 tgctaatgcaggctacgtgt 379
>gb|DT483851.1|DT483851 WS02523.B21_L24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_L24 3', mRNA sequence
Length = 857
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 77 tgctaatgcaggctacgtgt 96
||||||||||||||||||||
Sbjct: 807 tgctaatgcaggctacgtgt 788
>gb|DT496255.1|DT496255 WS01122.BR_O06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_O06 5', mRNA sequence
Length = 889
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 645 tcctcatcactgtaagcctt 626
>gb|DT496435.1|DT496435 WS01123.BR_G12 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01123_G12 5', mRNA sequence
Length = 939
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 647 tcctcatcactgtaagcctt 628
>gb|DT508298.1|DT508298 WS02420.BR_J12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J12 5', mRNA sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgctaatgcaggctacgtgt 96
||||||||||||||||||||
Sbjct: 356 tgctaatgcaggctacgtgt 375
>gb|DT508672.1|DT508672 WS02421.BR_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_J23 5', mRNA sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 95 tcctcatcactgtaagcctt 76
>gb|DT510504.1|DT510504 WS02426.BR_L21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_L21 5', mRNA sequence
Length = 856
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 590 tcctcatcactgtaagcctt 609
||||||||||||||||||||
Sbjct: 609 tcctcatcactgtaagcctt 590
>gb|DT512911.1|DT512911 WS02420.B21_J12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J12 3', mRNA sequence
Length = 848
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 77 tgctaatgcaggctacgtgt 96
||||||||||||||||||||
Sbjct: 790 tgctaatgcaggctacgtgt 771
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 123,106
Number of Sequences: 369679
Number of extensions: 123106
Number of successful extensions: 32228
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32132
Number of HSP's gapped (non-prelim): 100
length of query: 1286
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1267
effective length of database: 196,384,763
effective search space: 248819494721
effective search space used: 248819494721
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)