BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192890.2.1
(531 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI165376.1|AI165376 A082p50u Hybrid aspen plasmid librar... 38 0.33
gb|BU812843.1|BU812843 N002A11 Populus bark cDNA library Po... 38 0.33
gb|BU830235.1|BU830235 T005F07 Populus apical shoot cDNA li... 38 0.33
gb|BU830547.1|BU830547 T009H08 Populus apical shoot cDNA li... 38 0.33
gb|BU832232.1|BU832232 T031B02 Populus apical shoot cDNA li... 38 0.33
gb|BU834762.1|BU834762 T065D04 Populus apical shoot cDNA li... 38 0.33
gb|CA821850.1|CA821850 RSH08D09 two-month-old roots from cl... 38 0.33
gb|CK099738.1|CK099738 A082P50.5pR Hybrid aspen plasmid lib... 38 0.33
gb|CN517690.1|CN517690 GQ0093.B3_I21 GQ009 Populus trichoca... 38 0.33
gb|CN549702.1|CN549702 GQ0244.B3_I23 GQ024 Populus trichoca... 38 0.33
gb|AJ779540.1|AJ779540 AJ779540 Populus euphratica root 3-6... 38 0.33
gb|CV258982.1|CV258982 WS02010.B21_A18 PTxN-IB-N-A-11 Popul... 38 0.33
gb|CV275749.1|CV275749 WS0177.B21_H20 PTxD-NR-A-8 Populus t... 38 0.33
gb|CX653601.1|CX653601 PO02004D05 Poplar SC cDNA library Po... 38 0.33
gb|CX654871.1|CX654871 PO02060H07 Poplar SC cDNA library Po... 38 0.33
gb|CX656065.1|CX656065 PO02046A09 Poplar SC cDNA library Po... 38 0.33
gb|DT481502.1|DT481502 WS02532.BR_A22 PT-MB-N-A-15 Populus ... 38 0.33
gb|DT486833.1|DT486833 WS02532.B21_A22 PT-MB-N-A-15 Populus... 38 0.33
gb|DT496270.1|DT496270 WS01122.BR_O22 PT-P-FL-A-2 Populus t... 38 0.33
gb|DT499261.1|DT499261 WS0117.BR_M13 PT-P-FL-A-2 Populus tr... 38 0.33
gb|DT521641.1|DT521641 WS02034.B21_N10 PTxN-IB-N-A-11 Popul... 38 0.33
>gb|AI165376.1|AI165376 A082p50u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 366
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 45 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 103
>gb|BU812843.1|BU812843 N002A11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 473
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 136 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 194
>gb|BU830235.1|BU830235 T005F07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 314
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 28 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 86
>gb|BU830547.1|BU830547 T009H08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 272
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 118 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 176
>gb|BU832232.1|BU832232 T031B02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 444
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 142 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 200
>gb|BU834762.1|BU834762 T065D04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 504
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 166 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 224
>gb|CA821850.1|CA821850 RSH08D09 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 561
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 182 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 240
>gb|CK099738.1|CK099738 A082P50.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A082P50 5', mRNA sequence
Length = 390
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 93 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 151
>gb|CN517690.1|CN517690 GQ0093.B3_I21 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_I21 5', mRNA sequence
Length = 429
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 108 gctgttgggctgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 166
>gb|CN549702.1|CN549702 GQ0244.B3_I23 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0244_I23 5', mRNA sequence
Length = 380
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 96 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 154
>gb|AJ779540.1|AJ779540 AJ779540 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800003G09F1, mRNA sequence
Length = 472
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 171 gctgttgggctgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 229
>gb|CV258982.1|CV258982 WS02010.B21_A18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_A18 3', mRNA sequence
Length = 444
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 120 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 178
>gb|CV275749.1|CV275749 WS0177.B21_H20 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_H20 3', mRNA sequence
Length = 572
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 422 gctgttgggctgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 364
>gb|CX653601.1|CX653601 PO02004D05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02004D05 5', mRNA sequence
Length = 581
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 140 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 198
>gb|CX654871.1|CX654871 PO02060H07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060H07 5', mRNA sequence
Length = 679
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 140 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 198
>gb|CX656065.1|CX656065 PO02046A09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02046A09 5', mRNA sequence
Length = 616
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 140 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 198
>gb|DT481502.1|DT481502 WS02532.BR_A22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_A22 5', mRNA sequence
Length = 503
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 149 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 207
>gb|DT486833.1|DT486833 WS02532.B21_A22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_A22 3', mRNA sequence
Length = 503
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 355 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 297
>gb|DT496270.1|DT496270 WS01122.BR_O22 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_O22 5', mRNA sequence
Length = 544
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 167 gctgttgggctgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 225
>gb|DT499261.1|DT499261 WS0117.BR_M13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_M13
5', mRNA sequence
Length = 455
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 169 gctgttgggctgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 227
>gb|DT521641.1|DT521641 WS02034.B21_N10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_N10 3', mRNA sequence
Length = 480
Score = 38.2 bits (19), Expect = 0.33
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 169 gctgctggtctgtttgcgggatccatcttcctgatgcggaacttcggtgatctgatggc 227
|||| ||| |||||||| ||||| || || ||||||||||| | |||||||| |||||
Sbjct: 332 gctgttggactgtttgctggatctatttttctgatgcggaattatggtgatcttatggc 274
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,121
Number of Sequences: 369679
Number of extensions: 54121
Number of successful extensions: 14552
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14531
Number of HSP's gapped (non-prelim): 21
length of query: 531
length of database: 203,408,664
effective HSP length: 19
effective length of query: 512
effective length of database: 196,384,763
effective search space: 100548998656
effective search space used: 100548998656
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)