BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI127933.1|BI127933 G068P40Y Populus cambium cDNA librar... 127 6e-028
gb|BI127944.1|BI127944 G068P57Y Populus cambium cDNA librar... 127 6e-028
gb|CK087289.1|CK087289 A002P24.3pR Hybrid aspen plasmid lib... 127 6e-028
gb|CK117082.1|CK117082 B027P11 Hybrid aspen plasmid library... 88 6e-016
gb|DT504153.1|DT504153 WS01312.B21_D13 PTxD-IL-FL-A-4 Popul... 88 6e-016
gb|DT504872.1|DT504872 WS01315.B21_B17 PTxD-IL-FL-A-4 Popul... 88 6e-016
gb|CV279316.1|CV279316 WS0131.B21_D03 PTxD-IL-FL-A-4 Populu... 82 3e-014
gb|CV280120.1|CV280120 WS0134.B21_O04 PTxD-IL-FL-A-4 Populu... 82 3e-014
gb|DN490311.1|DN490311 UK114TF04.3pR Populus apical shoot c... 44 0.007
gb|CF236308.1|CF236308 PtaJXT11C12C1206 Poplar cDNA library... 38 0.46
>gb|BI127933.1|BI127933 G068P40Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 301
Score = 127 bits (64), Expect = 6e-028
Identities = 220/272 (80%)
Strand = Plus / Plus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
||||| || |||||| |||||||||| || ||||| ||||| || ||||| |||||||||
Sbjct: 20 aaaatagtgatggttttggctgctactaactttccttgggacatagatgaagcactgagg 79
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcactt 129
| ||| ||||||||||||| ||||||||||||||| ||||||| ||| | |||| |||
Sbjct: 80 aggaggttggagaagcgtatatatattccacttccaaattttgagagtcgtaaggacctt 139
Query: 130 atcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgct 189
|| | |||||| | | ||| || || | || | ||||| || ||||| |||||||||
Sbjct: 140 attaggattaatttgaaaactgtcgaggtgtccactgatgtcaatatcgatgaggttgct 199
Query: 190 cggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaatg 249
|| |||||||| || || |||||||||||||| || || |||||| | ||||| || |
Sbjct: 200 cgcaggacagatggatacagtggagatgatctaactaatgtttgcagagatgcttcttta 259
Query: 250 aatggcatgaggcgcaagatagcaggcaagac 281
||||| |||||||| |||||||| ||||||||
Sbjct: 260 aatgggatgaggcgaaagatagcgggcaagac 291
>gb|BI127944.1|BI127944 G068P57Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 488
Score = 127 bits (64), Expect = 6e-028
Identities = 247/308 (80%)
Strand = Plus / Plus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
||||| || |||||| |||||||||| || ||||| |||| || ||||| |||||||||
Sbjct: 20 aaaatagtgatggttttggctgctactaactttcctggggacatagatgaagcactgagg 79
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcactt 129
| ||| ||||||||||||| ||||||||||||||| ||||||| ||| | |||| |||
Sbjct: 80 aggaggttggagaagcgtatatatattccacttccaaattttgagagtcgtaaggacctt 139
Query: 130 atcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgct 189
|| | |||||| | | ||| || || | || | ||||| || ||||| |||||||||
Sbjct: 140 attaggattaatttgaaaactgtcgaggtgtccactgatgtcaatatcgatgaggttgct 199
Query: 190 cggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaatg 249
|| |||||||| || || |||||||||||||| || || |||||| | ||||| || |
Sbjct: 200 cgcaggacagatggatacagtggagatgatctaactaatgtttgcagagatgcttcttta 259
Query: 250 aatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaag 309
||||| |||||||| |||||||| |||||||| || || || || ||||||||| | |||
Sbjct: 260 aatgggatgaggcgaaagatagcgggcaagacacgagatgaaattaagaacatgcctaag 319
Query: 310 gacgagat 317
|| |||||
Sbjct: 320 gatgagat 327
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 388 tcagacatagagaagcatgagaagtgg 414
||||| || ||||||||||||||||||
Sbjct: 398 tcagatatcgagaagcatgagaagtgg 424
>gb|CK087289.1|CK087289 A002P24.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P24 3', mRNA sequence
Length = 741
Score = 127 bits (64), Expect = 6e-028
Identities = 247/308 (80%)
Strand = Plus / Minus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
||||| || |||||| |||||||||| || ||||| ||||| || ||||| |||||||||
Sbjct: 636 aaaatagtgatggttttggctgctactaactttccttgggacatagatgaagcactgagg 577
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcactt 129
| ||| ||||||||||||| ||||||||||||||| ||||||| ||| | |||| |||
Sbjct: 576 aggaggttggagaagcgtatatatattccacttccaaattttgagagtcgtaaggacctt 517
Query: 130 atcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgct 189
|| | |||||| | | ||| || || | || | ||||| || || || |||||||||
Sbjct: 516 attaggattaatttgaaaactgtcgaggtgtccactgatgtcaatattgatgaggttgct 457
Query: 190 cggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaatg 249
|| |||||||| || || |||||||||||||| || || |||||| | ||||| || |
Sbjct: 456 cgcaggacagatggatacagtggagatgatctaactaatgtttgcagagatgcttcttta 397
Query: 250 aatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaag 309
||||| |||||||| |||||||| |||||||| || || || || ||||||||| | |||
Sbjct: 396 aatgggatgaggcgaaagatagcgggcaagacacgagatgaaattaagaacatgcctaag 337
Query: 310 gacgagat 317
|| |||||
Sbjct: 336 gatgagat 329
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 388 tcagacatagagaagcatgagaagtgg 414
||||| || ||||||||||||||||||
Sbjct: 258 tcagatatcgagaagcatgagaagtgg 232
>gb|CK117082.1|CK117082 B027P11 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B027P11 5', mRNA sequence
Length = 151
Score = 87.7 bits (44), Expect = 6e-016
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 26 tggctgctacaaattttccatgggatattgatgaggcactgaggcgaaggctggagaagc 85
|||||||||| || ||||| ||||| || ||||| ||||||||| | ||| |||||||||
Sbjct: 20 tggctgctactaactttccttgggacatagatgaagcactgaggaggaggttggagaagc 79
Query: 86 gtatttatattccacttccagattttga 113
|||| ||||||||||||||| |||||||
Sbjct: 80 gtatatatattccacttccaaattttga 107
>gb|DT504153.1|DT504153 WS01312.B21_D13 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01312_D13 3', mRNA sequence
Length = 898
Score = 87.7 bits (44), Expect = 6e-016
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
||||| || |||||| |||||||||| || ||||| ||||| || ||||| |||||||||
Sbjct: 675 aaaatagtgatggttttggctgctactaactttccttgggacatagatgaagcactgagg 616
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttga 113
| ||| |||| |||||||| ||||||||||||||| |||||||
Sbjct: 615 aggaggttggaaaagcgtatatatattccacttccaaattttga 572
Score = 81.8 bits (41), Expect = 3e-014
Identities = 113/137 (82%)
Strand = Plus / Minus
Query: 181 gaggttgctcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgat 240
||||||||||| |||||||| || || |||||||||||||| || || |||||| | |||
Sbjct: 504 gaggttgctcgcaggacagatggatacagtggagatgatctaactaatgtttgcagagat 445
Query: 241 gcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaac 300
|| || | ||||| |||||||| |||||||| |||||||| || || || || ||||||
Sbjct: 444 gcttctttaaatgggatgaggcgaaagatagcgggcaagacacgagatgaaattaagaac 385
Query: 301 atgtcaaaggacgagat 317
||| | ||||| |||||
Sbjct: 384 atgcctaaggatgagat 368
>gb|DT504872.1|DT504872 WS01315.B21_B17 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01315_B17 3', mRNA sequence
Length = 936
Score = 87.7 bits (44), Expect = 6e-016
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
||||| || |||||| |||||||||| || ||||| ||||| || ||||| |||||||||
Sbjct: 675 aaaatagtgatggttttggctgctactaactttccttgggacatagatgaagcactgagg 616
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttga 113
| ||| |||| |||||||| ||||||||||||||| |||||||
Sbjct: 615 aggaggttggaaaagcgtatatatattccacttccaaattttga 572
Score = 81.8 bits (41), Expect = 3e-014
Identities = 113/137 (82%)
Strand = Plus / Minus
Query: 181 gaggttgctcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgat 240
||||||||||| |||||||| || || |||||||||||||| || || |||||| | |||
Sbjct: 504 gaggttgctcgcaggacagatggatacagtggagatgatctaactaatgtttgcagagat 445
Query: 241 gcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaac 300
|| || | ||||| |||||||| |||||||| |||||||| || || || || ||||||
Sbjct: 444 gcttctttaaatgggatgaggcgaaagatagcgggcaagacacgagatgaaattaagaac 385
Query: 301 atgtcaaaggacgagat 317
||| | ||||| |||||
Sbjct: 384 atgcctaaggatgagat 368
>gb|CV279316.1|CV279316 WS0131.B21_D03 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_D03 3', mRNA sequence
Length = 576
Score = 81.8 bits (41), Expect = 3e-014
Identities = 113/137 (82%)
Strand = Plus / Minus
Query: 181 gaggttgctcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgat 240
||||||||||| |||||||| || || |||||||||||||| || || |||||| | |||
Sbjct: 504 gaggttgctcgcaggacagatggatacagtggagatgatctaactaatgtttgcagagat 445
Query: 241 gcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaac 300
|| || | ||||| |||||||| |||||||| |||||||| || || || || ||||||
Sbjct: 444 gcttctttaaatgggatgaggcgaaagatagcgggcaagacacgagatgaaattaagaac 385
Query: 301 atgtcaaaggacgagat 317
||| | ||||| |||||
Sbjct: 384 atgcctaaggatgagat 368
>gb|CV280120.1|CV280120 WS0134.B21_O04 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_O04 3', mRNA sequence
Length = 541
Score = 81.8 bits (41), Expect = 3e-014
Identities = 113/137 (82%)
Strand = Plus / Minus
Query: 181 gaggttgctcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgat 240
||||||||||| |||||||| || || |||||||||||||| || || |||||| | |||
Sbjct: 504 gaggttgctcgcaggacagatggatacagtggagatgatctaactaatgtttgcagagat 445
Query: 241 gcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaac 300
|| || | ||||| |||||||| |||||||| |||||||| || || || || ||||||
Sbjct: 444 gcttctttaaatgggatgaggcgaaagatagcgggcaagacacgagatgaaattaagaac 385
Query: 301 atgtcaaaggacgagat 317
||| | ||||| |||||
Sbjct: 384 atgcctaaggatgagat 368
>gb|DN490311.1|DN490311 UK114TF04.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK114TF04 3', mRNA
sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 40 tttccatgggatattgatgaggcactgaggcgaaggctggagaagcgtatttatattcca 99
||||| ||||| || ||||| ||||| ||| | ||| |||| ||||||||||| |||||
Sbjct: 563 tttccttgggacatagatgaagcactaaggaggaggttggaaaagcgtatttacattccg 504
Query: 100 cttcca 105
||||||
Sbjct: 503 cttcca 498
Score = 44.1 bits (22), Expect = 0.007
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 184 gttgctcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcc 243
|||||||| ||||||| || || |||||||||||| | || || |||||| | ||||
Sbjct: 419 gttgctcgccggacagagggatacagtggagatgatttaacgaatgtttgcagagatgat 360
Query: 244 tcaatgaatggcatgaggcgcaagatagcaggcaagac 281
|| | ||||||||||| ||||||||||||| |||||
Sbjct: 359 tctttaaatggcatgagatgcaagatagcaggaaagac 322
>gb|CF236308.1|CF236308 PtaJXT11C12C1206 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 341
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 388 tcagacatagagaagcatgagaagtgg 414
||||| || ||||||||||||||||||
Sbjct: 79 tcagatatcgagaagcatgagaagtgg 105
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,594
Number of Sequences: 369679
Number of extensions: 76594
Number of successful extensions: 20363
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20333
Number of HSP's gapped (non-prelim): 29
length of query: 738
length of database: 203,408,664
effective HSP length: 19
effective length of query: 719
effective length of database: 196,384,763
effective search space: 141200644597
effective search space used: 141200644597
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)