BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library P... 101 4e-020
gb|CA823251.1|CA823251 R23A11 two-month-old roots from clon... 90 1e-016
gb|CK103910.1|CK103910 I004P65.5pR Populus senescing leaves... 86 2e-015
gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA libr... 82 4e-014
gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichoca... 82 4e-014
gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus... 74 9e-012
gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated wit... 74 9e-012
gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus... 74 9e-012
gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, comple... 70 1e-010
gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library f... 66 2e-009
gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus ... 62 3e-008
gb|BU889830.1|BU889830 P026B06 Populus petioles cDNA librar... 44 0.008
gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus t... 44 0.008
gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated wit... 44 0.008
gb|CK092919.1|CK092919 G100P11.3pR Populus tension wood cDN... 38 0.49
>gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 593
Score = 101 bits (51), Expect = 4e-020
Identities = 135/163 (82%)
Strand = Plus / Minus
Query: 568 tctgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccg 627
|||||| ||||||||| ||||||||||||||| ||||||||||||| || || || |
Sbjct: 258 tctgcacccagtagcttggagttccatagtgcattgaggagttgaagacaattgcatctg 199
Query: 628 ggttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaa 687
| |||||| | ||||||| |||||||| ||||| ||||| |||||||||| ||||
Sbjct: 198 gattccacctcctatcattgtgattcacgaaaagtggcgcgtagcttgccatctccacaa 139
Query: 688 tatcactgttcttctccagaccagtgaggaaagcagcttcagc 730
||||||||||||| ||||| ||| ||||||| ||||||||||
Sbjct: 138 tatcactgttcttttccagcccaatgaggaatccagcttcagc 96
>gb|CA823251.1|CA823251 R23A11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 536
Score = 89.7 bits (45), Expect = 1e-016
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 568 tctgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccg 627
|||||| ||||||||| ||||||||||||||| ||||||||||||| || || || |
Sbjct: 136 tctgcacccagtagcttggagttccatagtgcattgaggagttgaagacaattgcatctg 77
Query: 628 ggttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaa 687
| |||||| | |||||||| || ||||| ||||||||||| |||||||||| ||||
Sbjct: 76 gattccacctcctatcattgtcatttacgaaaagtggtgcgtagcttgccatctccacaa 17
Query: 688 tatcactgttctt 700
|||||||||||||
Sbjct: 16 tatcactgttctt 4
>gb|CK103910.1|CK103910 I004P65.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I004P65 5', mRNA sequence
Length = 486
Score = 85.7 bits (43), Expect = 2e-015
Identities = 134/163 (82%), Gaps = 1/163 (0%)
Strand = Plus / Minus
Query: 568 tctgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccg 627
|||||| ||||||||| ||||||||||||||| ||||||||||||| || || | |
Sbjct: 260 tctgcacccagtagcttggagttccatagtgcattgaggagttgaagacaattgcatt-g 202
Query: 628 ggttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaa 687
| |||||| | ||||||| |||||||| ||||| ||||| |||||||||| ||||
Sbjct: 201 gattccacctcctatcattgtgattcacgaaaagtggcgcgtagcttgccatctccacaa 142
Query: 688 tatcactgttcttctccagaccagtgaggaaagcagcttcagc 730
||||||||||||| ||||| ||| ||||||| ||||||||||
Sbjct: 141 tatcactgttcttttccagcccaatgaggaatccagcttcagc 99
>gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P61 3', mRNA sequence
Length = 835
Score = 81.8 bits (41), Expect = 4e-014
Identities = 131/161 (81%)
Strand = Plus / Plus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
|||| ||||||||| ||||||||||||||| | ||||||||||| || || || ||
Sbjct: 594 tgcacccagtagctcggagttccatagtgcattgacgagttgaagacaatcgcatctgga 653
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| || |||||| | ||||| || |||||||| || |||||||||| ||||||
Sbjct: 654 ttccaccttctatcattggcattcacaaaaagtggtgcatagcttgccatctctacaata 713
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttcagc 730
|| |||||||| ||||| ||| | |||||| ||||||||||
Sbjct: 714 tcgctgttcttttccagcccaataaggaaaccagcttcagc 754
>gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D15 5', mRNA sequence
Length = 754
Score = 81.8 bits (41), Expect = 4e-014
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
|||| ||||||||| ||||||||||||||| | ||||||||||| || || || ||
Sbjct: 447 tgcacccagtagctcggagttccatagtgcattgacgagttgaagacaatcgcatctgga 388
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| || |||||| | ||||| || |||||||| || |||||||||| ||||||
Sbjct: 387 ttccaccttctatcattggcattcacaaaaagtggtgcatagcttgccatctctacaata 328
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttcagc 730
|| |||||||| ||||| ||| | |||||| ||||||||||
Sbjct: 327 tcgctgttcttttccagcccaataaggaaaccagcttcagc 287
>gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_F18 3', mRNA sequence
Length = 765
Score = 73.8 bits (37), Expect = 9e-012
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
|||| ||||||||| ||||||||||||||| | | ||||||||||| || || || ||
Sbjct: 603 tgcacccagtagcttggagttccatagtgcgtcgacgagttgaagacaatcgcatctgga 662
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || ||||| |||||||| || |||||||||| ||||||
Sbjct: 663 ttccacctcctatcattggcatttacgaaaagtggtgcatagcttgccatctccacaata 722
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttcagc 730
|| |||||||| ||||| ||| | ||||| ||||||||||
Sbjct: 723 tcgctgttcttttccagcccaataaggaatccagcttcagc 763
>gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 512
Score = 73.8 bits (37), Expect = 9e-012
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
|||| ||||||||| ||||||||||||||| | | ||||||||||| || || || ||
Sbjct: 209 tgcacccagtagcttggagttccatagtgcgtcgacgagttgaagacaatcgcatctgga 150
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || ||||| |||||||| || |||||||||| ||||||
Sbjct: 149 ttccacctcctatcattggcatttacgaaaagtggtgcatagcttgccatctccacaata 90
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttcagc 730
|| |||||||| ||||| ||| | ||||| ||||||||||
Sbjct: 89 tcgctgttcttttccagcccaataaggaatccagcttcagc 49
>gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_H10 3', mRNA sequence
Length = 790
Score = 73.8 bits (37), Expect = 9e-012
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
|||| ||||||||| ||||||||||||||| | | ||||||||||| || || || ||
Sbjct: 603 tgcacccagtagcttggagttccatagtgcgtcgacgagttgaagacaatcgcatctgga 662
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || ||||| |||||||| || |||||||||| ||||||
Sbjct: 663 ttccacctcctatcattggcatttacgaaaagtggtgcatagcttgccatctccacaata 722
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttcagc 730
|| |||||||| ||||| ||| | ||||| ||||||||||
Sbjct: 723 tcgctgttcttttccagcccaataaggaatccagcttcagc 763
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
Length = 96930
Score = 69.9 bits (35), Expect = 1e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 641 gtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaatatcactg 695
||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||
Sbjct: 67019 gtcattgtcattcacgaaaagtggtgcgtagcttgccatctccacaatatcactg 67073
Score = 44.1 bits (22), Expect = 0.008
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 575 ccagtagctaggagttccatagtgctgccaggagttgaagac 616
||||||||| ||||||||||||||| |||||||||||||
Sbjct: 66848 ccagtagcttggagttccatagtgcattgaggagttgaagac 66889
>gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 630
Score = 65.9 bits (33), Expect = 2e-009
Identities = 129/161 (80%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
|||| ||||||||| ||||||||||||||| | ||||||||||| || || || ||
Sbjct: 178 tgcacccagtagctcggagttccatagtgcattgacgagttgaagacaatcgcatctgga 119
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
||||| | |||||| | ||||| || |||||||| || |||||||||| ||||||
Sbjct: 118 ctccacctcctatcattggcattcacaaaaagtggtgcatagcttgccatctccacaata 59
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttcagc 730
|| |||||||| ||||| ||| | |||||| ||||||||||
Sbjct: 58 tcgctgttcttttccagcccaataaggaaaccagcttcagc 18
>gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 3', mRNA sequence
Length = 716
Score = 61.9 bits (31), Expect = 3e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
|||| ||||||||| ||||||||||||||| | ||||||||||| || || || ||
Sbjct: 583 tgcacccagtagctcggagttccatagtgcattgacgagttgaagacaatcgcatctgga 642
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| || |||||| | ||||| || |||||||| || |||||||||| ||||||
Sbjct: 643 ttccaccttctatcattggcattcacaaaaagtggtgcatagcttgccatctctacaata 702
Query: 690 tcactgttctt 700
|| ||||||||
Sbjct: 703 tcgctgttctt 713
>gb|BU889830.1|BU889830 P026B06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 499
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgc 599
|||| ||||||||| |||||||||||||||
Sbjct: 311 tgcacccagtagctcggagttccatagtgc 282
>gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_A12 3', mRNA sequence
Length = 671
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 570 tgcatccagtagctaggagttccatagtgc 599
|||| ||||||||| |||||||||||||||
Sbjct: 587 tgcacccagtagctcggagttccatagtgc 616
>gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 380
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgc 599
|||| ||||||||| |||||||||||||||
Sbjct: 88 tgcacccagtagctcggagttccatagtgc 59
>gb|CK092919.1|CK092919 G100P11.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G100P11 3', mRNA sequence
Length = 807
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 270 ttgctcagctggcttttca 288
|||||||||||||||||||
Sbjct: 109 ttgctcagctggcttttca 91
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,364
Number of Sequences: 369679
Number of extensions: 65364
Number of successful extensions: 17199
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17143
Number of HSP's gapped (non-prelim): 47
length of query: 780
length of database: 203,408,664
effective HSP length: 19
effective length of query: 761
effective length of database: 196,384,763
effective search space: 149448804643
effective search space used: 149448804643
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)