BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.21
(693 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Libr... 44 0.007
gb|BU867645.1|BU867645 M102F09 Populus flower cDNA library ... 38 0.43
gb|BU879871.1|BU879871 UM38TE08 Populus flower cDNA library... 38 0.43
gb|BU880465.1|BU880465 UM49TE04 Populus flower cDNA library... 38 0.43
gb|BU880798.1|BU880798 UM55TA01 Populus flower cDNA library... 38 0.43
gb|BU880938.1|BU880938 UM56TG04 Populus flower cDNA library... 38 0.43
gb|BU881556.1|BU881556 UM64TE07 Populus flower cDNA library... 38 0.43
gb|BU882291.1|BU882291 UM75TB02 Populus flower cDNA library... 38 0.43
gb|BU883589.1|BU883589 UM93TE12 Populus flower cDNA library... 38 0.43
gb|BU883641.1|BU883641 UM95TD03 Populus flower cDNA library... 38 0.43
gb|CF120071.1|CF120071 MTU10CS.P9.H09 Aspen stem cDNA Libra... 38 0.43
gb|AJ771076.1|AJ771076 AJ771076 Populus euphratica leaf 3-6... 38 0.43
gb|AJ772174.1|AJ772174 AJ772174 Populus euphratica shoot in... 38 0.43
gb|AJ770035.1|AJ770035 AJ770035 Populus euphratica leaf 3-6... 38 0.43
gb|DN485052.1|DN485052 M102F09.3pR Populus female catkins c... 38 0.43
gb|DN494520.1|DN494520 M102F09.5pR Populus female catkins c... 38 0.43
>gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 189
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 671 gtacctcggccgcgaccacgct 692
||||||||||||||||||||||
Sbjct: 168 gtacctcggccgcgaccacgct 189
>gb|BU867645.1|BU867645 M102F09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 160 taccctttctccatgagat 142
>gb|BU879871.1|BU879871 UM38TE08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 628
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 159 taccctttctccatgagat 141
>gb|BU880465.1|BU880465 UM49TE04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 158 taccctttctccatgagat 140
>gb|BU880798.1|BU880798 UM55TA01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 431
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 174 taccctttctccatgagat 156
>gb|BU880938.1|BU880938 UM56TG04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 580
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 159 taccctttctccatgagat 141
>gb|BU881556.1|BU881556 UM64TE07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 583
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 159 taccctttctccatgagat 141
>gb|BU882291.1|BU882291 UM75TB02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 426
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 159 taccctttctccatgagat 141
>gb|BU883589.1|BU883589 UM93TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 160 taccctttctccatgagat 142
>gb|BU883641.1|BU883641 UM95TD03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 158 taccctttctccatgagat 140
>gb|CF120071.1|CF120071 MTU10CS.P9.H09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 624
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 667 caaagtacctcggccgcga 685
|||||||||||||||||||
Sbjct: 30 caaagtacctcggccgcga 12
>gb|AJ771076.1|AJ771076 AJ771076 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001500001E06F1, mRNA sequence
Length = 146
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 670 agtacctcggccgcgaccacgct 692
||||||||||||| |||||||||
Sbjct: 24 agtacctcggccgtgaccacgct 2
>gb|AJ772174.1|AJ772174 AJ772174 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700002E01F1, mRNA sequence
Length = 386
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 671 gtacctcggccgcgaccacgcta 693
|||||||||||| ||||||||||
Sbjct: 364 gtacctcggccgggaccacgcta 386
>gb|AJ770035.1|AJ770035 AJ770035 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006A08F1, mRNA sequence
Length = 179
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 671 gtacctcggccgcgaccacgcta 693
|||||||||||| ||||||||||
Sbjct: 157 gtacctcggccgggaccacgcta 179
>gb|DN485052.1|DN485052 M102F09.3pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M102F09 3', mRNA sequence
Length = 664
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 506 taccctttctccatgagat 524
>gb|DN494520.1|DN494520 M102F09.5pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M102F09 5', mRNA sequence
Length = 605
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 525 taccctttctccatgagat 543
|||||||||||||||||||
Sbjct: 159 taccctttctccatgagat 141
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,380
Number of Sequences: 369679
Number of extensions: 62380
Number of successful extensions: 16610
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16594
Number of HSP's gapped (non-prelim): 16
length of query: 693
length of database: 203,408,664
effective HSP length: 19
effective length of query: 674
effective length of database: 196,384,763
effective search space: 132363330262
effective search space used: 132363330262
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)