BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161254.2.1
(1192 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ774822.1|AJ774822 AJ774822 Populus euphratica shoot 3-... 84 1e-014
gb|DN501581.1|DN501581 V006H08.5pR Populus male catkins cDN... 84 1e-014
gb|DT474803.1|DT474803 WS0125.BR_A19 PT-GT-FL-A-3 Populus t... 84 1e-014
gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, comple... 68 8e-010
gb|DT500038.1|DT500038 PX0011.BR_A12 PT-X-FL-A-1 Populus tr... 56 3e-006
>gb|AJ774822.1|AJ774822 AJ774822 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300024F09F1, mRNA sequence
Length = 538
Score = 83.8 bits (42), Expect = 1e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
||||||||||| ||||| || || || |||||||| |||||||| ||||||||||| |||
Sbjct: 344 cctgaaacactctttggaattttcttcgaggagataaaccatgctggagctggtgggata 403
Query: 487 tgggcagagcttgt 500
||||||||||||||
Sbjct: 404 tgggcagagcttgt 417
>gb|DN501581.1|DN501581 V006H08.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V006H08 5', mRNA sequence
Length = 508
Score = 83.8 bits (42), Expect = 1e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
||||||||||| ||||| || || || |||||||| |||||||| ||||||||||| |||
Sbjct: 281 cctgaaacactttttggaattttcttcgaggagataaaccatgccggagctggtgggata 340
Query: 487 tgggcagagcttgt 500
||||||||||||||
Sbjct: 341 tgggcagagcttgt 354
>gb|DT474803.1|DT474803 WS0125.BR_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 5', mRNA sequence
Length = 585
Score = 83.8 bits (42), Expect = 1e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
||||||||||| ||||| || || || |||||||| |||||||| ||||||||||| |||
Sbjct: 282 cctgaaacactctttggaattttcttcgaggagataaaccatgctggagctggtgggata 341
Query: 487 tgggcagagcttgt 500
||||||||||||||
Sbjct: 342 tgggcagagcttgt 355
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 664 ccagctggtggtgttggtgtttataacccaggtttttggggcatgaa 710
||||||||||| |||||| | || || ||||| ||||||||||||||
Sbjct: 534 ccagctggtggagttggtatatacaatccagggttttggggcatgaa 580
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
Length = 96930
Score = 67.9 bits (34), Expect = 8e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgt 500
||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 72735 aggagataaaccatgccggagctggtgggatatgggcagagcttgt 72690
Score = 40.1 bits (20), Expect = 0.19
Identities = 71/88 (80%)
Strand = Plus / Minus
Query: 1105 attggtccatgggaagagaggcctggacacttcggggatgtttggcattactggactgat 1164
||||| || ||||| ||||| ||||| || || || ||||||||| || |||||||||
Sbjct: 70649 attggaccctgggaggagagacctgggcattttggtgatgtttggatgtattggactgat 70590
Query: 1165 gatgggcttggatattatgagttccttc 1192
||||| ||||| || | |||||| ||||
Sbjct: 70589 gatggacttggttactttgagtttcttc 70562
>gb|DT500038.1|DT500038 PX0011.BR_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0011_A12
5', mRNA sequence
Length = 513
Score = 56.0 bits (28), Expect = 3e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 664 ccagctggtggtgttggtgtttataacccaggtttttggggcatgaacatagaagatggg 723
||||||||||| |||||| | || || ||||| |||||||||||||| || ||| | |||
Sbjct: 65 ccagctggtggagttggtatatacaatccagggttttggggcatgaatattgaacaaggg 124
Query: 724 aaggccta 731
||||||||
Sbjct: 125 aaggccta 132
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 967 gacacatacaagggacatggtttccg 992
|||||||||||||| |||||||||||
Sbjct: 368 gacacatacaaggggcatggtttccg 393
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,842
Number of Sequences: 369679
Number of extensions: 152842
Number of successful extensions: 45220
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45190
Number of HSP's gapped (non-prelim): 30
length of query: 1192
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1173
effective length of database: 196,384,763
effective search space: 230359326999
effective search space used: 230359326999
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)