BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.1
(1225 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU827871.1|BU827871 K010P53P Populus apical shoot cDNA l... 54 1e-005
gb|BU828335.1|BU828335 K021P17P Populus apical shoot cDNA l... 54 1e-005
gb|CA928870.1|CA928870 MTU6TR.P7.H01 Aspen root cDNA Librar... 54 1e-005
gb|CA931925.1|CA931925 MTU4TA.P24.F07 Aspen apex cDNA Libra... 54 1e-005
gb|CK115506.1|CK115506 Y010G11 Populus infected leaf substr... 54 1e-005
gb|DV464561.1|DV464561 MTUNUL1.P29.B02 NUL Populus fremonti... 54 1e-005
gb|BU828713.1|BU828713 K027P33P Populus apical shoot cDNA l... 52 5e-005
gb|CX658343.1|CX658343 PO01034A06 Poplar SC cDNA library Po... 48 8e-004
gb|CX658486.1|CX658486 PO01035F05 Poplar SC cDNA library Po... 48 8e-004
gb|BU819848.1|BU819848 UA48BPC10 Populus tremula cambium cD... 46 0.003
gb|CK114946.1|CK114946 Y001G08 Populus infected leaf substr... 46 0.003
gb|DN493331.1|DN493331 Y001G08.3pR Populus infected leaf su... 46 0.003
gb|DN503311.1|DN503311 Y001G08.5pR Populus infected leaf su... 46 0.003
gb|CK109592.1|CK109592 N019D01 Populus bark cDNA library Po... 42 0.049
gb|DV465864.1|DV465864 MTUNUL1.P44.B06 NUL Populus fremonti... 42 0.049
gb|BI069525.1|BI069525 C002P50U Populus strain T89 leaves P... 40 0.20
gb|CF227965.1|CF227965 PtaXM0007A9A0901 Poplar cDNA library... 40 0.20
gb|CF236196.1|CF236196 PtaJXT1H12H1216 Poplar cDNA library ... 40 0.20
gb|CV263301.1|CV263301 WS02020.B21_O14 PTxN-IB-N-A-11 Popul... 40 0.20
gb|CV267866.1|CV267866 WS02032.B21_O14 PTxN-IB-N-A-11 Popul... 40 0.20
gb|CV272216.1|CV272216 WS0157.B21_A06 PTxN-IB-A-6 Populus t... 40 0.20
gb|CX168148.1|CX168148 A05_69-114_01.ab1 leaf inoculated wi... 40 0.20
gb|CX181728.1|CX181728 C07_45-108_05.ab1 leaf inoculated wi... 40 0.20
gb|CX657760.1|CX657760 PO01005A04 Poplar SC cDNA library Po... 40 0.20
gb|DT501091.1|DT501091 WS0131.BR_H07 PTxD-IL-FL-A-4 Populus... 40 0.20
gb|DT523721.1|DT523721 WS02040.B21_H12 PTxN-IB-N-A-11 Popul... 40 0.20
gb|AC149298.1| Populus trichocarpa clone Pop1-021H24, compl... 40 0.20
>gb|BU827871.1|BU827871 K010P53P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 580
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
||||||||||| ||||||||||| |||||||||||
Sbjct: 55 atgtagcagaagtgtccggtctcatgcgtgacgtg 21
>gb|BU828335.1|BU828335 K021P17P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 553
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
||||||||||| ||||||||||| |||||||||||
Sbjct: 263 atgtagcagaagtgtccggtctcatgcgtgacgtg 229
>gb|CA928870.1|CA928870 MTU6TR.P7.H01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 678
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
||||||||||| ||||||||||| |||||||||||
Sbjct: 548 atgtagcagaagtgtccggtctcatgcgtgacgtg 582
>gb|CA931925.1|CA931925 MTU4TA.P24.F07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 657
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
||||||||||| ||||||||||| |||||||||||
Sbjct: 580 atgtagcagaagtgtccggtctcatgcgtgacgtg 614
>gb|CK115506.1|CK115506 Y010G11 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y010G11 5', mRNA sequence
Length = 624
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
||||||||||| ||||||||||| |||||||||||
Sbjct: 594 atgtagcagaagtgtccggtctcatgcgtgacgtg 560
>gb|DV464561.1|DV464561 MTUNUL1.P29.B02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 784
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
||||||||||| ||||||||||| |||||||||||
Sbjct: 478 atgtagcagaagtgtccggtctcatgcgtgacgtg 444
>gb|BU828713.1|BU828713 K027P33P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 608
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgt 733
||||||||||| ||||||||||| ||||||||||
Sbjct: 238 atgtagcagaagtgtccggtctcatgcgtgacgt 205
>gb|CX658343.1|CX658343 PO01034A06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034A06 5', mRNA sequence
Length = 594
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgac 731
||||||||||| ||||||||||| ||||||||
Sbjct: 472 atgtagcagaagtgtccggtctcatgcgtgac 441
>gb|CX658486.1|CX658486 PO01035F05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01035F05 5', mRNA sequence
Length = 717
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgac 731
||||||||||| ||||||||||| ||||||||
Sbjct: 141 atgtagcagaagtgtccggtctcatgcgtgac 110
>gb|BU819848.1|BU819848 UA48BPC10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 485
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 703 tagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcgctt 761
|||||||| |||||||||||||| || || || |||||||| || || ||||| |||||
Sbjct: 92 tagcagaagtgtccggtctcgtgagtaacatgagcgaagaaagctgcaatctcacgctt 34
>gb|CK114946.1|CK114946 Y001G08 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y001G08 5', mRNA sequence
Length = 633
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
|||| |||||| ||||||||||| |||||||||||
Sbjct: 450 atgtggcagaagtgtccggtctcatgcgtgacgtg 416
>gb|DN493331.1|DN493331 Y001G08.3pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y001G08 3', mRNA sequence
Length = 779
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
|||| |||||| ||||||||||| |||||||||||
Sbjct: 483 atgtggcagaagtgtccggtctcatgcgtgacgtg 517
>gb|DN503311.1|DN503311 Y001G08.5pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y001G08 5', mRNA sequence
Length = 772
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgacgtg 734
|||| |||||| ||||||||||| |||||||||||
Sbjct: 435 atgtggcagaagtgtccggtctcatgcgtgacgtg 401
>gb|CK109592.1|CK109592 N019D01 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N019D01 5', mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.049
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 167 ttattattatgattattattactgc 191
|||||||||||||||||||| ||||
Sbjct: 562 ttattattatgattattattgctgc 538
>gb|DV465864.1|DV465864 MTUNUL1.P44.B06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 751
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 482 ttattattatgattattatta 502
>gb|BI069525.1|BI069525 C002P50U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 332
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168 tattattatgattattatta 187
||||||||||||||||||||
Sbjct: 29 tattattatgattattatta 10
>gb|CF227965.1|CF227965 PtaXM0007A9A0901 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 333
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 138 gttttattattattattattatta 161
>gb|CF236196.1|CF236196 PtaJXT1H12H1216 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 363
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 139 gttttattattattattattatta 162
>gb|CV263301.1|CV263301 WS02020.B21_O14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_O14 3', mRNA sequence
Length = 739
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 322 gttttattattattattattatta 299
>gb|CV267866.1|CV267866 WS02032.B21_O14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_O14 3', mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 305 gttttattattattattattatta 282
>gb|CV272216.1|CV272216 WS0157.B21_A06 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_A06 3', mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 43 gttttattattattattattatta 20
>gb|CX168148.1|CX168148 A05_69-114_01.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168 tattattatgattattatta 187
||||||||||||||||||||
Sbjct: 366 tattattatgattattatta 347
>gb|CX181728.1|CX181728 C07_45-108_05.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 169 attattatgattattattac 188
||||||||||||||||||||
Sbjct: 72 attattatgattattattac 91
>gb|CX657760.1|CX657760 PO01005A04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01005A04 5', mRNA sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 167 ttattattatgattattattactg 190
|||||||||| |||||||||||||
Sbjct: 145 ttattattattattattattactg 122
>gb|DT501091.1|DT501091 WS0131.BR_H07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_H07 5', mRNA sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 579 cccgtagttgtagttccacg 598
||||||||||||||||||||
Sbjct: 519 cccgtagttgtagttccacg 500
>gb|DT523721.1|DT523721 WS02040.B21_H12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02040_H12 3', mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 305 gttttattattattattattatta 282
>gb|AC149298.1| Populus trichocarpa clone Pop1-021H24, complete sequence
Length = 146635
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 130803 gttttattattattattattatta 130826
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,860
Number of Sequences: 369679
Number of extensions: 79860
Number of successful extensions: 19638
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19593
Number of HSP's gapped (non-prelim): 45
length of query: 1225
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1206
effective length of database: 196,384,763
effective search space: 236840024178
effective search space used: 236840024178
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)