BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.2
(1078 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI165085.1|AI165085 A074p79u Hybrid aspen plasmid librar... 64 1e-008
gb|BI127335.1|BI127335 G058P78Y Populus cambium cDNA librar... 64 1e-008
gb|BI127343.1|BI127343 G058P86Y Populus cambium cDNA librar... 64 1e-008
gb|BI127931.1|BI127931 G068P36Y Populus cambium cDNA librar... 64 1e-008
gb|BI128462.1|BI128462 G076P64Y Populus cambium cDNA librar... 64 1e-008
gb|BI128862.1|BI128862 G082P55Y Populus cambium cDNA librar... 64 1e-008
gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA librar... 64 1e-008
gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cD... 64 1e-008
gb|BU836626.1|BU836626 T088H07 Populus apical shoot cDNA li... 64 1e-008
gb|BU896715.1|BU896715 X044F08 Populus wood cDNA library Po... 64 1e-008
gb|CK107886.1|CK107886 G058P78 Populus tension wood cDNA li... 64 1e-008
gb|CK107894.1|CK107894 G058P86 Populus tension wood cDNA li... 64 1e-008
gb|CK115022.1|CK115022 Y002F04 Populus infected leaf substr... 64 1e-008
gb|CV262163.1|CV262163 WS02018.B21_M22 PTxN-IB-N-A-11 Popul... 64 1e-008
gb|CV266155.1|CV266155 WS02029.B21_E02 PTxN-IB-N-A-11 Popul... 64 1e-008
gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated wit... 64 1e-008
gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA li... 64 1e-008
gb|DT507184.1|DT507184 WS02417.BR_J07 PTxD-ICC-N-A-14 Popul... 64 1e-008
gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase ... 64 1e-008
gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A ... 64 1e-008
gb|BI131594.1|BI131594 G123P05Y Populus cambium cDNA librar... 60 2e-007
gb|CF236393.1|CF236393 PtaJXT2C3C0305 Poplar cDNA library f... 56 3e-006
gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal libr... 56 3e-006
gb|BU862701.1|BU862701 S019A04 Populus imbibed seed cDNA li... 50 2e-004
gb|CA927064.1|CA927064 MTU6CR.P4.E04 Aspen root cDNA Librar... 50 2e-004
gb|CA933005.1|CA933005 MTU5CS.P2.C06 Aspen stem cDNA Librar... 50 2e-004
gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA librar... 46 0.003
gb|BI132001.1|BI132001 G129P26Y Populus cambium cDNA librar... 46 0.003
gb|BU895348.1|BU895348 X022H01 Populus wood cDNA library Po... 46 0.003
gb|BU897803.1|BU897803 X069H06 Populus wood cDNA library Po... 46 0.003
gb|BI131914.1|BI131914 G127P54Y Populus cambium cDNA librar... 44 0.011
gb|BU888804.1|BU888804 P012G04 Populus petioles cDNA librar... 44 0.011
gb|BU896200.1|BU896200 X037B03 Populus wood cDNA library Po... 44 0.011
gb|CF232330.1|CF232330 PtaJXO0009B6B0604 Poplar cDNA librar... 44 0.011
gb|CF235915.1|CF235915 PtaJXT0028E1E0109 Poplar cDNA librar... 44 0.011
gb|AJ775074.1|AJ775074 AJ775074 Populus euphratica shoot 3-... 44 0.011
gb|CV259062.1|CV259062 WS02010.B21_E06 PTxN-IB-N-A-11 Popul... 42 0.043
>gb|AI165085.1|AI165085 A074p79u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 405
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 27 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 86
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 87 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 146
>gb|BI127335.1|BI127335 G058P78Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 537
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 208 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 267
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 268 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 327
>gb|BI127343.1|BI127343 G058P86Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 455
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 292 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 351
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 352 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 411
>gb|BI127931.1|BI127931 G068P36Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 478
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 33 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 92
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 93 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 152
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 330 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 389
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 390 gacaggcatgatgg 403
>gb|BI128462.1|BI128462 G076P64Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 513
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 3 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 62
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 63 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 122
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 300 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 359
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 360 gacaggcatgatgg 373
>gb|BI128862.1|BI128862 G082P55Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 428
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 173 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 232
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 233 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 292
>gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 492
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 62 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 121
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 122 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 181
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 359 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 418
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 419 gacaggcatgatgg 432
>gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 449
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 91 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 150
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 151 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 210
>gb|BU836626.1|BU836626 T088H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 757
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 368 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 427
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 428 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 487
>gb|BU896715.1|BU896715 X044F08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 652
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 422 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 481
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 482 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 541
>gb|CK107886.1|CK107886 G058P78 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G058P78 5', mRNA sequence
Length = 515
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 214 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 273
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 274 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 333
>gb|CK107894.1|CK107894 G058P86 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G058P86 5', mRNA sequence
Length = 523
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 292 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 351
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 352 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 411
>gb|CK115022.1|CK115022 Y002F04 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y002F04 5', mRNA sequence
Length = 568
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 309 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 368
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 369 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 428
>gb|CV262163.1|CV262163 WS02018.B21_M22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_M22 3', mRNA sequence
Length = 925
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | |||||||| || ||||| || | |||
Sbjct: 925 aaccatggaaggcctcagccccttcagtatgtcgtcaacgctgccttcctagcaacccta 866
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| ||||| || ||||| || ||||||
Sbjct: 865 tttagtgattatcttgaagctgctgatacacctggatggtattgtggaccaaatttctac 806
>gb|CV266155.1|CV266155 WS02029.B21_E02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02029_E02 3', mRNA sequence
Length = 807
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | |||||||| || ||||| || | |||
Sbjct: 137 aaccatggaaggcctcagccccttcagtatgtcgtcaacgctgccttcctagcaacccta 196
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| ||||| || ||||| || ||||||
Sbjct: 197 tttagtgattatcttgaagctgctgatacacctggatggtattgtggaccaaatttctac 256
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 56 gaagaaatactgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcc 114
|||||||||||||| ||||| |||||||| ||| | | | |||||||||||||||||
Sbjct: 32 gaagaaatactgagtacatttcacaaccagaccagtattatcatgtgctcatatctgcc 90
>gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 679
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | |||||||| || ||||| || | |||
Sbjct: 260 aaccatggaaggcctcagccccttcagtatgtcgtcaacgctgccttcctagcaacccta 319
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| ||||| || ||||| || ||||||
Sbjct: 320 tttagtgattatcttgaagctgctgatacacctggatggtattgtggaccaaatttctac 379
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 gaagaaatactgaggacattccacaacca 84
|||||||||||||| ||||| ||||||||
Sbjct: 155 gaagaaatactgagtacatttcacaacca 183
>gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA library Populus tremula cDNA
clone P078B11 5', mRNA sequence
Length = 830
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 102 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 161
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 162 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 221
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 399 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 458
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 459 gacaggcatgatgg 472
>gb|DT507184.1|DT507184 WS02417.BR_J07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J07 5', mRNA sequence
Length = 822
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | |||||||| || ||||| || | |||
Sbjct: 6 aaccatggaaggcctcagccccttcagtatgtcgtcaacgctgccttcctagcaacccta 65
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| ||||| || ||||| || ||||||
Sbjct: 66 tttagtgattatcttgaagctgctgatacacctggatggtattgtggaccaaatttctac 125
>gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase (Kor1) mRNA, complete cds
Length = 2562
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 1565 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 1624
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 1625 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 1684
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 1862 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 1921
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 1922 gacaggcatgatgg 1935
Score = 42.1 bits (21), Expect = 0.043
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 650 aagaacaccatcttctctgcgattcctccgatgttcccaac 690
||||||||||| ||||||||| |||| || ||||| |||||
Sbjct: 2048 aagaacaccatattctctgcggttcccccaatgtttccaac 2088
>gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A mRNA, complete cds
Length = 1860
Score = 63.9 bits (32), Expect = 1e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 1303 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 1362
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 1363 tttagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 1422
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 1600 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 1659
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 1660 gacaggcatgatgg 1673
>gb|BI131594.1|BI131594 G123P05Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 436
Score = 60.0 bits (30), Expect = 2e-007
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 163 ccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctctata 222
|||||||||||||||||| |||||||| | ||||| || || ||||| || | ||||
Sbjct: 313 ccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaaccctatt 372
Query: 223 cagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
|| || |||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 373 tagtgattatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 430
>gb|CF236393.1|CF236393 PtaJXT2C3C0305 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 657
Score = 56.0 bits (28), Expect = 3e-006
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | ||||| || || ||||| || | |||
Sbjct: 81 aaccatggaaggcctcagccccttcagtatgtcgtcaatgctgccttcctagcaacccta 140
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || ||||| ||||| || ||||| || ||||||
Sbjct: 141 tttagtgattatcttgaagctgctgatacacctggatggtattgtggaccaaatttctac 200
>gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 860
Score = 56.0 bits (28), Expect = 3e-006
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||||||||||||||| |||||||| | |||||||| || | ||| || | |||
Sbjct: 159 aaccatggaaggcctcagccccttcagtatgtcgtcaacgctgcctacctagcaacccta 218
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
| || || |||||||||||||| || || || || ||||| || ||||| |||||||||
Sbjct: 219 tttagtgattatcttgaagctgctgatacacccggatggtattgtggaccaaacttctac 278
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 gaagaaatactgaggacattccacaacca 84
|||||||||||||| ||||| ||||||||
Sbjct: 54 gaagaaatactgagtacatttcacaacca 82
>gb|BU862701.1|BU862701 S019A04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 680
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| | |||| |||| || || | ||||| ||||| ||||| ||||| ||
Sbjct: 112 tggagggacaccacgaagccaaatccaaatacacttgttggagccatggttgctggtcct 171
Query: 518 gacaggcgtgatggctacaaagatgtccgcacgaactacaa 558
||||||| |||||| | | | ||||||||||| ||||||||
Sbjct: 172 gacaggcatgatggtttccatgatgtccgcaccaactacaa 212
>gb|CA927064.1|CA927064 MTU6CR.P4.E04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 254
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagta 189
|||||||||||||||||||| ||||||||
Sbjct: 158 aaccatggaaggcctcagccccttcagta 186
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 gaagaaatactgaggacattccacaacca 84
||||||||||| |||||||| ||||||||
Sbjct: 53 gaagaaatactaaggacatttcacaacca 81
>gb|CA933005.1|CA933005 MTU5CS.P2.C06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 185
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagta 189
|||||||||||||||||||| ||||||||
Sbjct: 89 aaccatggaaggcctcagccccttcagta 117
>gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 539
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 230 tatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
|||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 175 tatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 225
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcag 187
|||||||||||||||||||| ||||||
Sbjct: 104 aaccatggaaggcctcagccccttcag 130
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 403 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 462
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 463 gacaggcatgatgg 476
>gb|BI132001.1|BI132001 G129P26Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 223
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 230 tatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
|||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 12 tatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 62
>gb|BU895348.1|BU895348 X022H01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 281
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 230 tatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
|||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 8 tatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 58
>gb|BU897803.1|BU897803 X069H06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 747
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 230 tatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
|||||||||||||| || || ||||| |||||||| ||||| || ||||||
Sbjct: 71 tatcttgaagctgctgatacacctggatggtactgtggaccaaatttctac 121
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 299 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 358
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 359 gacaggcatgatgg 372
>gb|BI131914.1|BI131914 G127P54Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 382
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 220 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 279
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 280 gacaggcatgatgg 293
>gb|BU888804.1|BU888804 P012G04 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 691
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 87 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 146
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 147 gacaggcatgatgg 160
>gb|BU896200.1|BU896200 X037B03 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 159 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 218
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 219 gacaggcatgatgg 232
>gb|CF232330.1|CF232330 PtaJXO0009B6B0604 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 734
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 133 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 192
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 193 gacaggcatgatgg 206
>gb|CF235915.1|CF235915 PtaJXT0028E1E0109 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 732
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 153 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 212
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 213 gacaggcatgatgg 226
>gb|AJ775074.1|AJ775074 AJ775074 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300027E06F1, mRNA sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 458 tggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggcccc 517
||||||||||| |||| ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct: 59 tggagggacacctcgaagccaaacccaaatacacttgttggagccatggttgctggccct 118
Query: 518 gacaggcgtgatgg 531
||||||| ||||||
Sbjct: 119 gacaggcatgatgg 132
>gb|CV259062.1|CV259062 WS02010.B21_E06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_E06 3', mRNA sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.043
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgcc 699
|||||||||||||| |||||||| |||| || ||||| ||||| || |||||
Sbjct: 427 gataagaacaccatattctctgcagttcccccaatgtttccaactccgccgcc 375
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,992
Number of Sequences: 369679
Number of extensions: 121992
Number of successful extensions: 32154
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31984
Number of HSP's gapped (non-prelim): 165
length of query: 1078
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1059
effective length of database: 196,384,763
effective search space: 207971464017
effective search space used: 207971464017
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)