BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161072.2.3
         (885 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI129170.1|BI129170  G086P80Y Populus cambium cDNA librar...    44   0.009
gb|BU809549.1|BU809549  UL59TB10 Populus leaf cDNA library P...    44   0.009
gb|BU895099.1|BU895099  X019C07 Populus wood cDNA library Po...    44   0.009
gb|CF119485.1|CF119485  MTU10CS.P2.D11 Aspen stem cDNA Libra...    44   0.009
gb|CF227310.1|CF227310  PtaD2B11B1103 Poplar cDNA library fr...    44   0.009
gb|CX178341.1|CX178341  E07_45-60_09.ab1 leaf inoculated wit...    42   0.036
gb|CA823654.1|CA823654  R29D09 two-month-old roots from clon...    40   0.14 

>gb|BI129170.1|BI129170 G086P80Y Populus cambium cDNA library Populus tremula x Populus
           tremuloides cDNA, mRNA sequence
          Length = 518

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
           ||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 248 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 297



>gb|BU809549.1|BU809549 UL59TB10 Populus leaf cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 414

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
           ||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 92  ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 141



>gb|BU895099.1|BU895099 X019C07 Populus wood cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 379

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
           ||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 207 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 256



>gb|CF119485.1|CF119485 MTU10CS.P2.D11 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 250

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
           ||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 217 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 168



>gb|CF227310.1|CF227310 PtaD2B11B1103 Poplar cDNA library from wood tissues Populus alba x
           Populus tremula cDNA 5', mRNA sequence
          Length = 476

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
           ||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 166 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 215



>gb|CX178341.1|CX178341 E07_45-60_09.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 618

 Score = 42.1 bits (21), Expect = 0.036
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 590 ggaggaggagaagaggaagag 610
           |||||||||||||||||||||
Sbjct: 328 ggaggaggagaagaggaagag 308



>gb|CA823654.1|CA823654 R29D09 two-month-old roots from clone 'Beaupre' Populus trichocarpa
           x Populus deltoides cDNA 5', mRNA sequence
          Length = 621

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 592 aggaggagaagaggaagaggagga 615
           ||||||||||||||| ||||||||
Sbjct: 128 aggaggagaagaggaggaggagga 151



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,776
Number of Sequences: 369679
Number of extensions: 102776
Number of successful extensions: 31777
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31769
Number of HSP's gapped (non-prelim): 8
length of query: 885
length of database: 203,408,664
effective HSP length: 19
effective length of query: 866
effective length of database: 196,384,763
effective search space: 170069204758
effective search space used: 170069204758
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)