BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804898.2.1
(739 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN484785.1|DN484785 K019P56.3pR Populus apical shoot cDN... 40 0.12
gb|BU815652.1|BU815652 N044E10 Populus bark cDNA library Po... 38 0.46
gb|BU885595.1|BU885595 R033E01 Populus root cDNA library Po... 38 0.46
gb|CK090633.1|CK090633 F017P42.3pR Populus flower cDNA libr... 38 0.46
gb|CK090847.1|CK090847 F027P85.3pR Populus flower cDNA libr... 38 0.46
gb|CV131082.1|CV131082 L1P05f10 Populus stem seasonal libra... 38 0.46
gb|CV277508.1|CV277508 WS0143.B21_M14 PTxD-IL-A-5 Populus t... 38 0.46
gb|CX659398.1|CX659398 PO01030C04 Poplar SC cDNA library Po... 38 0.46
gb|DV465368.1|DV465368 MTUNUL1.P38.F03 NUL Populus fremonti... 38 0.46
>gb|DN484785.1|DN484785 K019P56.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K019P56 3', mRNA sequence
Length = 315
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 254 gaagcaggggggaaggtgat 273
||||||||||||||||||||
Sbjct: 283 gaagcaggggggaaggtgat 264
>gb|BU815652.1|BU815652 N044E10 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 474
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 14 accgccgccgccgccgtcgtcgccgcc 40
|||||||||||||||| || |||||||
Sbjct: 158 accgccgccgccgccgccgccgccgcc 132
>gb|BU885595.1|BU885595 R033E01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 521
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 14 accgccgccgccgccgtcgtcgccgcc 40
|||||||||||||||| || |||||||
Sbjct: 171 accgccgccgccgccgccgccgccgcc 145
>gb|CK090633.1|CK090633 F017P42.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F017P42 3', mRNA sequence
Length = 789
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 13 caccgccgccgccgccgtcgtcgccgc 39
||||||||||||||||| || ||||||
Sbjct: 404 caccgccgccgccgccgccgccgccgc 430
>gb|CK090847.1|CK090847 F027P85.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F027P85 3', mRNA sequence
Length = 772
Score = 38.2 bits (19), Expect = 0.46
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 13 caccgccgccgccgccgtcgtcgccgc 39
||||||||||||||||| || ||||||
Sbjct: 385 caccgccgccgccgccgccgccgccgc 411
>gb|CV131082.1|CV131082 L1P05f10 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 344
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13 caccgccgccgccgccgtc 31
|||||||||||||||||||
Sbjct: 64 caccgccgccgccgccgtc 82
>gb|CV277508.1|CV277508 WS0143.B21_M14 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0143_M14 3', mRNA sequence
Length = 826
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 254 gaagcaggggggaaggtga 272
|||||||||||||||||||
Sbjct: 489 gaagcaggggggaaggtga 471
>gb|CX659398.1|CX659398 PO01030C04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01030C04 5', mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 254 gaagcaggggggaaggtga 272
|||||||||||||||||||
Sbjct: 345 gaagcaggggggaaggtga 363
>gb|DV465368.1|DV465368 MTUNUL1.P38.F03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 865
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 254 gaagcaggggggaaggtga 272
|||||||||||||||||||
Sbjct: 863 gaagcaggggggaaggtga 845
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,640
Number of Sequences: 369679
Number of extensions: 62640
Number of successful extensions: 18236
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18205
Number of HSP's gapped (non-prelim): 12
length of query: 739
length of database: 203,408,664
effective HSP length: 19
effective length of query: 720
effective length of database: 196,384,763
effective search space: 141397029360
effective search space used: 141397029360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)