BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716450.2.1
(2214 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK099630.1|CK099630 A078P48.5pR Hybrid aspen plasmid lib... 129 5e-028
gb|CX185404.1|CX185404 F12_45-19_12.ab1 leaf inoculated wit... 115 7e-024
gb|AJ770296.1|AJ770296 AJ770296 Populus euphratica leaf 3-6... 113 3e-023
gb|CV258894.1|CV258894 WS0201.B21_M19 PTxN-IB-N-A-11 Populu... 113 3e-023
gb|CX172457.1|CX172457 C02_69-2_06.ab1 leaf inoculated with... 113 3e-023
gb|BI136570.1|BI136570 F070P19Y Populus flower cDNA library... 107 2e-021
gb|CA825786.1|CA825786 R67E06 two-month-old roots from clon... 107 2e-021
gb|BI130598.1|BI130598 G108P01Y Populus cambium cDNA librar... 105 7e-021
gb|CX181109.1|CX181109 B06_45-98_04.ab1 leaf inoculated wit... 103 3e-020
gb|CX181661.1|CX181661 F02_45-100_12.ab1 leaf inoculated wi... 103 3e-020
gb|CX184683.1|CX184683 F11_45-116_11.ab1 leaf inoculated wi... 103 3e-020
gb|CX186042.1|CX186042 A03_45-66_01.ab1 leaf inoculated wit... 101 1e-019
gb|BP929082.1|BP929082 BP929082 full-length enriched poplar... 101 1e-019
gb|DT480685.1|DT480685 WS02529.BR_J22 PT-MB-N-A-15 Populus ... 101 1e-019
gb|BI137321.1|BI137321 F084P21Y Populus flower cDNA library... 100 4e-019
gb|CX178037.1|CX178037 B10_45-16_04.ab1 leaf inoculated wit... 100 4e-019
gb|BP928217.1|BP928217 BP928217 full-length enriched poplar... 100 4e-019
gb|BU817185.1|BU817185 UA14CPA01 Populus tremula cambium cD... 96 7e-018
gb|AI165209.1|AI165209 A078P48U Hybrid aspen plasmid librar... 92 1e-016
gb|CF233934.1|CF233934 PtaJXO0029D1D0107 Poplar cDNA librar... 92 1e-016
gb|AI166015.1|AI166015 B006P10U Hybrid aspen plasmid librar... 90 4e-016
gb|CF119982.1|CF119982 MTU10CS.P8.G09 Aspen stem cDNA Libra... 88 2e-015
gb|CF936799.1|CF936799 PO3010E03 Populus tomentiglandulosa ... 82 1e-013
gb|BI070813.1|BI070813 C045P37U Populus strain T89 leaves P... 78 2e-012
gb|DV465196.1|DV465196 MTUNUL1.P36.D09 NUL Populus fremonti... 76 6e-012
gb|BU821422.1|BU821422 UB22CPH10 Populus tremula cambium cD... 72 1e-010
gb|DT500404.1|DT500404 PX0015.BR_F22 PT-X-FL-A-1 Populus tr... 72 1e-010
gb|BU884745.1|BU884745 R014H12 Populus root cDNA library Po... 62 1e-007
gb|CX178672.1|CX178672 F12_45-9_12.ab1 leaf inoculated with... 62 1e-007
gb|AI164881.1|AI164881 A070P24U Hybrid aspen plasmid librar... 60 4e-007
gb|CA933918.1|CA933918 MTU3TS.P14.D04 Aspen stem cDNA Libra... 58 2e-006
gb|CA934253.1|CA934253 MTU3TS.P5.B08 Aspen stem cDNA Librar... 58 2e-006
gb|CK089237.1|CK089237 B006P10.3pR Hybrid aspen plasmid lib... 58 2e-006
gb|CX660295.1|CX660295 PO01011F02 Poplar SC cDNA library Po... 58 2e-006
gb|BP935724.1|BP935724 BP935724 full-length enriched poplar... 58 2e-006
gb|CA933597.1|CA933597 MTU3TS.P10.H11 Aspen stem cDNA Libra... 56 6e-006
gb|BI072396.1|BI072396 C074P96U Populus strain T89 leaves P... 54 2e-005
gb|CA926423.1|CA926423 MTU6CR.P14.H04 Aspen root cDNA Libra... 52 9e-005
gb|CA927044.1|CA927044 MTU6CR.P4.C03 Aspen root cDNA Librar... 52 9e-005
gb|DT485951.1|DT485951 WS02529.B21_J22 PT-MB-N-A-15 Populus... 52 9e-005
gb|DN488090.1|DN488090 R032A09.3pR Populus root cDNA librar... 50 4e-004
gb|CV228282.1|CV228282 WS0191.B21_J20 PT-DX-N-A-10 Populus ... 46 0.006
gb|CV252598.1|CV252598 PX0015.B21_F22 PT-X-FL-A-1 Populus t... 46 0.006
gb|CA932458.1|CA932458 MTU5CS.P13.C03 Aspen stem cDNA Libra... 44 0.023
gb|CV239696.1|CV239696 WS0233.B21_D08 PT-MB-A-13 Populus tr... 42 0.090
gb|CF216342.1|CF216342 PT1173 Hybrid aspen xylem up-regulat... 40 0.35
>gb|CK099630.1|CK099630 A078P48.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A078P48 5', mRNA sequence
Length = 489
Score = 129 bits (65), Expect = 5e-028
Identities = 281/353 (79%)
Strand = Plus / Minus
Query: 784 atctgcgggccctgttcaacacctttcctgaacggatcaccaacgacgcgcttcaatgca 843
||||| ||||| |||||||| || ||| |||| ||||||||||| || || | | |||
Sbjct: 390 atctgagggccttgttcaacgcccttcttgaagggatcaccaacaacacgtcttagagca 331
Query: 844 cgagccttggccttctccacaaactcatcataaacacgctcatgtacaaacgtgcgagat 903
|| |||||||| || || | |||||||| || ||||| ||||||||| | || |||||
Sbjct: 330 cgtgccttggctttttctatgaactcatcgtacacacgttcatgtacatatgtacgagaa 271
Query: 904 ccagcgcagcagcattgtccctggttaaagaacagggcaaagtgcgcaagctcaacagca 963
||||| ||||| ||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 270 ccagcacagcaacattgtccctgattaaagaacaaagcaaagtgtgcaagctccacagcc 211
Query: 964 tggtcaacatcagcatcgtccattatgatgaaaggggacttgcctcctaactccagtgtc 1023
| ||||||||||||||| || || |||||||| || || ||||| | ||| | |||
Sbjct: 210 ttgtcaacatcagcatcctcacatacaatgaaaggtgatttccctcccagctctaatgta 151
Query: 1024 actgtcttaaggttgctctttgcagccaactcgagaataatttttccagtatcggtagat 1083
|||| || ||||| || |||||||| | || || | ||| || ||||| || || |||
Sbjct: 150 actgcttttaggttactttttgcagcaagttcaagtacaatcttaccagtttcagttgat 91
Query: 1084 ccagtaaatgcgatcttatcaacatccatgtgactagcaagagcagcaccagc 1136
||||| || || ||||| || ||||||||||||| ||||||||| ||||||||
Sbjct: 90 ccagtgaaagcaatcttgtccacatccatgtgacgagcaagagctgcaccagc 38
>gb|CX185404.1|CX185404 F12_45-19_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 704
Score = 115 bits (58), Expect = 7e-024
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||||||||||||||| || ||||||||||| || ||||| |||
Sbjct: 492 gacctttcataagcactcatcttcggccatggtccctcatcaaaagctttacgagcagca 433
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || || ||||| |||||||||||||||||||| || ||
Sbjct: 432 gctactgcacggttgacatcttcagcatcaccttcagccacatgagcaatcacttctcca 373
Query: 1684 gtacgagggtccagagttgggaaggtcttgccggatgc 1721
|||||||| || | ||||| ||||| ||||| |||||
Sbjct: 372 gtacgaggatcatgtgttggaaaggttttgccagatgc 335
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1411 gcccaaccagcatagtaacg 1430
||||||||||||||||||||
Sbjct: 645 gcccaaccagcatagtaacg 626
>gb|AJ770296.1|AJ770296 AJ770296 Populus euphratica leaf 3-6 months, adult Populus euphratica
cDNA clone P0001100010B07F1, mRNA sequence
Length = 605
Score = 113 bits (57), Expect = 3e-023
Identities = 117/137 (85%)
Strand = Plus / Plus
Query: 1062 aatttttccagtatcggtagatccagtaaatgcgatcttatcaacatccatgtgactagc 1121
||||||||||||||| || ||||| || || || | |||||| |||||||| || |||||
Sbjct: 3 aatttttccagtatcagttgatcctgtgaacgcaagcttatccacatccatatggctagc 62
Query: 1122 aagagcagcaccagcagtagggccaaaaccagaaacgacgttcacaacaccctcaggcag 1181
||||||||||||||| || || |||||||||||||| || |||| |||||| || || ||
Sbjct: 63 aagagcagcaccagcggttggaccaaaaccagaaaccacattcagaacaccatctggaag 122
Query: 1182 tccagcctcatgcaaca 1198
|||||||||||| ||||
Sbjct: 123 tccagcctcatggaaca 139
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatgcaag 1356
||||| |||||||| || ||||||||||| || |||||||| |||||||||
Sbjct: 247 ggaaaattccatggaataatctgacctgctacaccaattggttcatgcaag 297
>gb|CV258894.1|CV258894 WS0201.B21_M19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_M19 3', mRNA sequence
Length = 910
Score = 113 bits (57), Expect = 3e-023
Identities = 153/185 (82%)
Strand = Plus / Plus
Query: 796 tgttcaacacctttcctgaacggatcaccaacgacgcgcttcaatgcacgagccttggcc 855
|||||||| || ||| |||| ||||||||||| || || | | ||||| ||||||||
Sbjct: 630 tgttcaacgcccttcttgaagggatcaccaacaacacgtcttagagcacgtgccttggct 689
Query: 856 ttctccacaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcag 915
|| || || |||||||| || ||||| ||||||||| | || ||||| ||||| |||||
Sbjct: 690 ttttctacgaactcatcgtacacacgttcatgtacatatgtacgagaaccagcacagcaa 749
Query: 916 cattgtccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatca 975
||||||||||| |||||||||| |||||||| |||||||| ||||| | ||||||||||
Sbjct: 750 cattgtccctgattaaagaacaaagcaaagtgtgcaagctccacagccttgtcaacatca 809
Query: 976 gcatc 980
|||||
Sbjct: 810 gcatc 814
>gb|CX172457.1|CX172457 C02_69-2_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 628
Score = 113 bits (57), Expect = 3e-023
Identities = 153/185 (82%)
Strand = Plus / Minus
Query: 796 tgttcaacacctttcctgaacggatcaccaacgacgcgcttcaatgcacgagccttggcc 855
|||||||| || ||| |||| ||||||||||| || || | | ||||| ||||||||
Sbjct: 262 tgttcaacgcccttcttgaagggatcaccaacaacacgtcttagagcacgtgccttggct 203
Query: 856 ttctccacaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcag 915
|| || || |||||||| || ||||| ||||||||| | || ||||| ||||| |||||
Sbjct: 202 ttttctacgaactcatcgtacacacgttcatgtacatatgtacgagaaccagcacagcaa 143
Query: 916 cattgtccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatca 975
||||||||||| |||||||||| |||||||| |||||||| ||||| | ||||||||||
Sbjct: 142 cattgtccctgattaaagaacaaagcaaagtgtgcaagctccacagccttgtcaacatca 83
Query: 976 gcatc 980
|||||
Sbjct: 82 gcatc 78
>gb|BI136570.1|BI136570 F070P19Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 512
Score = 107 bits (54), Expect = 2e-021
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||||||||||||||| || |||||||| || || ||||| |||
Sbjct: 398 gacctttcataagcactcatcttcggccatggtccctcatcaaatgctttacgagcagca 339
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || || ||||| |||||||||||||||||||| || ||
Sbjct: 338 gctactgcacggttgacatcttcagcatcaccttcagccacatgagcaatcacttctcca 279
Query: 1684 gtacgagggtccagagttgggaaggtcttgccggatgc 1721
|||||||| || | ||||| ||||| ||||| |||||
Sbjct: 278 gtacgaggatcatgtgttggaaaggttttgccagatgc 241
>gb|CA825786.1|CA825786 R67E06 two-month-old roots from clone 'Beaupre' Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 612
Score = 107 bits (54), Expect = 2e-021
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||||||||||||||| || |||||||| || || ||||| |||
Sbjct: 379 gacctttcataagcactcatcttcggccatggtccctcatcaaatgctttacgagcagca 320
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || || ||||| |||||||||||||||||||| || ||
Sbjct: 319 gctactgcacggttgacatcttcagcatcaccttcagccacatgagcaatcacttctcca 260
Query: 1684 gtacgagggtccagagttgggaaggtcttgccggatgc 1721
|||||||| || | ||||| ||||| ||||| |||||
Sbjct: 259 gtacgaggatcatgtgttggaaaggttttgccagatgc 222
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1411 gcccaaccagcatagtaacg 1430
||||||||||||||||||||
Sbjct: 533 gcccaaccagcatagtaacg 514
>gb|BI130598.1|BI130598 G108P01Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 277
Score = 105 bits (53), Expect = 7e-021
Identities = 152/185 (82%)
Strand = Plus / Minus
Query: 796 tgttcaacacctttcctgaacggatcaccaacgacgcgcttcaatgcacgagccttggcc 855
||||||||||| ||| |||| ||||| ||||| ||||| | | ||||| ||||| ||
Sbjct: 212 tgttcaacacccttcttgaagggatcgccaacaacgcgtcttagagcacgtgcctttgct 153
Query: 856 ttctccacaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcag 915
||||| || |||||||| || ||||||||||||||| | || ||||| ||||| || ||
Sbjct: 152 ttctctacgaactcatcgtacacacgctcatgtacatatgtacgagaaccagcacaacaa 93
Query: 916 cattgtccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatca 975
||||||||||| ||||||||||| ||| ||| |||||||| ||||| | |||||||||
Sbjct: 92 cattgtccctgattaaagaacagagcatggtgtgcaagctccacagccttatcaacatca 33
Query: 976 gcatc 980
|||||
Sbjct: 32 gcatc 28
>gb|CX181109.1|CX181109 B06_45-98_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 632
Score = 103 bits (52), Expect = 3e-020
Identities = 109/128 (85%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||||||||||||||| || |||||||| || || ||||| |||
Sbjct: 410 gacctttcataagcactcatcttcggccatggtccctcatcaaatgctttacgagcagca 351
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || || ||||| |||||||||||||||||||| || ||
Sbjct: 350 gctactgcacggttgacatcttcagcatcaccttcagccacatgagcaatcacttctcca 291
Query: 1684 gtacgagg 1691
||||||||
Sbjct: 290 gtacgagg 283
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1411 gcccaaccagcatagtaacg 1430
||||||||||||||||||||
Sbjct: 563 gcccaaccagcatagtaacg 544
>gb|CX181661.1|CX181661 F02_45-100_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 720
Score = 103 bits (52), Expect = 3e-020
Identities = 109/128 (85%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||||||||||||||| || |||||||| || || ||||| |||
Sbjct: 446 gacctttcataagcactcatcttcggccatggtccctcatcaaatgctttacgagcagca 387
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || || ||||| |||||||||||||||||||| || ||
Sbjct: 386 gctactgcacggttgacatcttcagcatcaccttcagccacatgagcaatcacttctcca 327
Query: 1684 gtacgagg 1691
||||||||
Sbjct: 326 gtacgagg 319
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 1291 gcaaacatcagaagaggaaagttccatgggatgatctgacctgcaactccaattggctca 1350
|||||||| | ||||||||||||||| ||||| ||||| || ||||| ||||| || |||
Sbjct: 719 gcaaacatgataagaggaaagttccaagggattatctgtccggcaacaccaatgggttca 660
Query: 1351 tgcaa 1355
|||||
Sbjct: 659 tgcaa 655
>gb|CX184683.1|CX184683 F11_45-116_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 653
Score = 103 bits (52), Expect = 3e-020
Identities = 109/128 (85%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||||||||||||||| || |||||||| || || ||||| |||
Sbjct: 484 gacctttcataagcactcatcttcggccatggtccctcatcaaatgctttacgagcagca 425
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || || ||||| |||||||||||||||||||| || ||
Sbjct: 424 gctactgcacggttgacatcttcagcatcaccttcagccacatgagcaatcacttctcca 365
Query: 1684 gtacgagg 1691
||||||||
Sbjct: 364 gtacgagg 357
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1411 gcccaaccagcatagtaacg 1430
||||||||||||||||||||
Sbjct: 637 gcccaaccagcatagtaacg 618
>gb|CX186042.1|CX186042 A03_45-66_01.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 696
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 1261 ccacatgccaaagcagggccaactttccaggcaaacatcagaagaggaaagttccatggg 1320
|||||||| || || || ||||| ||||| | |||||| || | ||||| ||||||||
Sbjct: 672 ccacatgctaatgctggcccaaccttccaagaaaacatgagcattggaaaattccatgga 613
Query: 1321 atgatctgacctgcaactccaattggctcatgcaagatctgtacatggtgtgggccatca 1380
|| ||||||||||| || |||| ||| ||||||||| |||||||||| | ||| ||||||
Sbjct: 612 ataatctgacctgctacaccaaatggttcatgcaaggtctgtacatgatatggcccatca 553
Query: 1381 gccggcacaatgagcccatggatcttatcagcccaaccagcatagta 1427
|| || || |||| |||||||| ||||| |||||||||||||||||
Sbjct: 552 gcaggaactgtgaggccatggattttatctgcccaaccagcatagta 506
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1651 tcaccctcagccacatgagcaatcacctcccctgt 1685
||||| ||||| |||||||||||||| ||||||||
Sbjct: 282 tcaccttcagcaacatgagcaatcacttcccctgt 248
>gb|BP929082.1|BP929082 BP929082 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-093_C23.f 5', mRNA sequence
Length = 574
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 1261 ccacatgccaaagcagggccaactttccaggcaaacatcagaagaggaaagttccatggg 1320
|||||||| || || || ||||| ||||| | |||||| || | ||||| ||||||||
Sbjct: 253 ccacatgctaatgctggcccaaccttccaagaaaacatgagcattggaaaattccatgga 194
Query: 1321 atgatctgacctgcaactccaattggctcatgcaagatctgtacatggtgtgggccatca 1380
|| ||||||||||| || |||||||| ||||||||| | |||||||| | ||| ||||||
Sbjct: 193 ataatctgacctgctacaccaattggttcatgcaaggtttgtacatgatatggcccatca 134
Query: 1381 gccggcacaatgagcccatggatcttatcagcccaaccagcatagta 1427
|| || || |||| |||||||| ||||| |||||||||||||||||
Sbjct: 133 gcaggaactgtgaggccatggattttatctgcccaaccagcatagta 87
Score = 93.7 bits (47), Expect = 3e-017
Identities = 110/131 (83%)
Strand = Plus / Minus
Query: 1063 atttttccagtatcggtagatccagtaaatgcgatcttatcaacatccatgtgactagca 1122
||||| || ||||| || ||||| || ||||| | |||||| |||||||| || ||||||
Sbjct: 451 attttcccggtatcagttgatcctgtgaatgcaagcttatccacatccatatggctagca 392
Query: 1123 agagcagcaccagcagtagggccaaaaccagaaacgacgttcacaacaccctcaggcagt 1182
|||||||||||||| || || || ||||||||||| || |||| |||||| || || |||
Sbjct: 391 agagcagcaccagcggttggaccgaaaccagaaaccacattcagaacaccatctggaagt 332
Query: 1183 ccagcctcatg 1193
|||||||||||
Sbjct: 331 ccagcctcatg 321
>gb|DT480685.1|DT480685 WS02529.BR_J22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02529_J22 5', mRNA sequence
Length = 829
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 1261 ccacatgccaaagcagggccaactttccaggcaaacatcagaagaggaaagttccatggg 1320
|||||||| || || || ||||| ||||| | |||||| || | ||||| ||||||||
Sbjct: 745 ccacatgctaatgctggcccaaccttccaagaaaacatgagcattggaaaattccatgga 686
Query: 1321 atgatctgacctgcaactccaattggctcatgcaagatctgtacatggtgtgggccatca 1380
|| ||||||||||| || |||||||| ||||||||| | |||||||| | ||| ||||||
Sbjct: 685 ataatctgacctgctacaccaattggttcatgcaaggtttgtacatgatatggcccatca 626
Query: 1381 gccggcacaatgagcccatggatcttatcagcccaaccagcatagta 1427
|| || || |||| |||||||| ||||| |||||||||||||||||
Sbjct: 625 gcaggaactgtgaggccatggattttatctgcccaaccagcatagta 579
Score = 52.0 bits (26), Expect = 9e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 1588 ggccatggcccttcatcaaaagccttgcgagccgcagctactgcacggttaatgtcctct 1647
|||||||| |||||||||||||||||||| || |||| || || | ||| | || ||
Sbjct: 418 ggccatggtccttcatcaaaagccttgcgggcagcagagaccgctctgtttacatcttca 359
Query: 1648 gcgtcaccctcagccacatgagcaatcacctcccctgt 1685
| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 358 acatcaccttcagcaacatgagcaatcacttcccctgt 321
>gb|BI137321.1|BI137321 F084P21Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 443
Score = 99.6 bits (50), Expect = 4e-019
Identities = 131/158 (82%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||||||||||||||| || |||||| | || || ||||| |||
Sbjct: 352 gacctttcataagcactcatcttcggccatggtccctcatcagatgctttacgagcagca 293
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || || ||||| |||||||||||||||||||| || ||
Sbjct: 292 gctactgcacggttgacatcttcagcatcaccttcagccacatgagcaatcacttctcca 233
Query: 1684 gtacgagggtccagagttgggaaggtcttgccggatgc 1721
|||||||| || | ||||| ||||| ||||| |||||
Sbjct: 232 gtacgaggatcatgtgttggaaaggttttgccagatgc 195
>gb|CX178037.1|CX178037 B10_45-16_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 653
Score = 99.6 bits (50), Expect = 4e-019
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatgcaagatctgtaca 1365
||||| |||||||| || ||||||||||| || |||| ||| ||||||||| ||||||||
Sbjct: 643 ggaaaattccatggaataatctgacctgctacaccaaatggttcatgcaaggtctgtaca 584
Query: 1366 tggtgtgggccatcagccggcacaatgagcccatggatcttatcagcccaaccagcatag 1425
|| | ||| |||||||| || || |||| |||||||| ||||| |||||||||||||||
Sbjct: 583 tgatatggcccatcagcaggaactgtgaggccatggattttatctgcccaaccagcatag 524
Query: 1426 ta 1427
||
Sbjct: 523 ta 522
Score = 42.1 bits (21), Expect = 0.090
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1588 ggccatggcccttcatcaaaagccttgcg 1616
||||| || ||||||||||||||||||||
Sbjct: 361 ggccacggtccttcatcaaaagccttgcg 333
Score = 40.1 bits (20), Expect = 0.35
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1651 tcaccctcagccacatgagcaatcacctcccc 1682
||||| ||||| |||||||||||||| |||||
Sbjct: 298 tcaccttcagcaacatgagcaatcacttcccc 267
>gb|BP928217.1|BP928217 BP928217 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-080_C06.f 5', mRNA sequence
Length = 264
Score = 99.6 bits (50), Expect = 4e-019
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatgcaagatctgtaca 1365
||||| |||||||| || ||||||||||| || |||||||| ||||||||| | ||||||
Sbjct: 210 ggaaaattccatggaataatctgacctgctacaccaattggttcatgcaaggtttgtaca 151
Query: 1366 tggtgtgggccatcagccggcacaatgagcccatggatcttatcagcccaaccagcatag 1425
|| | ||| |||||||| || || |||| |||||||| ||||| |||||||||||||||
Sbjct: 150 tgatatggcccatcagcaggaactgtgaggccatggattttatctgcccaaccagcatag 91
Query: 1426 ta 1427
||
Sbjct: 90 ta 89
>gb|BU817185.1|BU817185 UA14CPA01 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 486
Score = 95.6 bits (48), Expect = 7e-018
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 1062 aatttttccagtatcggtagatccagtaaatgcgatcttatcaacatccatgtgactagc 1121
||||||||||||||| || ||||| || ||||| | |||||| |||||||| || |||||
Sbjct: 449 aatttttccagtatcagttgatcctgtgaatgcaagcttatccacatccatatggctagc 390
Query: 1122 aagagcagcaccagcagtagggccaaaaccagaaacgacgttcacaacaccctcaggcag 1181
|||| |||||||||| || || || |||||||| || || |||| |||||| || || ||
Sbjct: 389 aagaccagcaccagcggttggaccgaaaccagacaccacattcagaacaccatctggaag 330
Query: 1182 tccagcctcatg 1193
||||||||||||
Sbjct: 329 tccagcctcatg 318
Score = 93.7 bits (47), Expect = 3e-017
Identities = 137/167 (82%)
Strand = Plus / Minus
Query: 1261 ccacatgccaaagcagggccaactttccaggcaaacatcagaagaggaaagttccatggg 1320
|||||||| || || || ||||| ||||| | |||||| || | ||||| ||||||||
Sbjct: 250 ccacatgctaatgctggcccaaccttccaagaaaacatgagcattggaaaattccatgga 191
Query: 1321 atgatctgacctgcaactccaattggctcatgcaagatctgtacatggtgtgggccatca 1380
|| ||||||||||| || || ||||| ||||||||| | |||||||| | ||| ||||||
Sbjct: 190 ataatctgacctgctacaccgattggttcatgcaaggtttgtacatgatatggcccatca 131
Query: 1381 gccggcacaatgagcccatggatcttatcagcccaaccagcatagta 1427
|| || || |||| |||||||| ||||| |||||||||||||||||
Sbjct: 130 gcaggaactgtgaggccatggattttatctgcccaaccagcatagta 84
>gb|AI165209.1|AI165209 A078P48U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 316
Score = 91.7 bits (46), Expect = 1e-016
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 865 aactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgtccc 924
||||||| || ||||| ||||||||| | || ||||| ||||| ||||| |||||||||
Sbjct: 257 aactcatngtacacacgttcatgtacatatgtacgagaaccagcacagcaacattgtccc 198
Query: 925 tggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatc 980
|| |||||||||| |||||||| |||||||| ||||| | |||| ||||||||||
Sbjct: 197 tgattaaagaacaaagcaaagtgtgcaagctccacagccttgtcancatcagcatc 142
>gb|CF233934.1|CF233934 PtaJXO0029D1D0107 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 705
Score = 91.7 bits (46), Expect = 1e-016
Identities = 150/185 (81%)
Strand = Plus / Minus
Query: 796 tgttcaacacctttcctgaacggatcaccaacgacgcgcttcaatgcacgagccttggcc 855
||||||||||| ||| |||| ||||| ||||| ||||| | | ||||| ||||| ||
Sbjct: 238 tgttcaacacccttcttgaagggatcgccaacaacgcgtcttagagcacgtgcctttgct 179
Query: 856 ttctccacaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcag 915
||||| || || ||| || ||||| ||||||||| |||| ||||| ||||| || ||
Sbjct: 178 ttctctacgaanaaatcgtacacacgttcatgtacatacgtacgagaaccagcacaacaa 119
Query: 916 cattgtccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatca 975
||||||||||| ||||||||||||||| ||| |||||||| ||||| | |||||| |||
Sbjct: 118 cattgtccctgattaaagaacagggcatggtgtgcaagctccacagccttgtcaacgtca 59
Query: 976 gcatc 980
|||||
Sbjct: 58 gcatc 54
>gb|AI166015.1|AI166015 B006P10U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 228
Score = 89.7 bits (45), Expect = 4e-016
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1062 aatttttccagtatcggtagatccagtaaatgcgatcttatcaacatccatgtgactagc 1121
||||||||||||||| || ||||| || ||||| | |||||| |||||||| || |||||
Sbjct: 183 aatttttccagtatcagttgatcctgtgaatgcaagcttatccacatccatatggctagc 124
Query: 1122 aagagcagcaccagcagtagggccaaaaccagaaacgacgttcacaacaccctcaggcag 1181
||| |||||||||| || || || |||||||| || || |||| |||||| || || ||
Sbjct: 123 aagnccagcaccagcggttggaccgaaaccagacaccacattcagaacaccatctggaag 64
Query: 1182 tccagcctcatg 1193
||||||||||||
Sbjct: 63 tccagcctcatg 52
>gb|CF119982.1|CF119982 MTU10CS.P8.G09 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 607
Score = 87.7 bits (44), Expect = 2e-015
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 1255 gtatttccacatgccaaagcagggccaactttccaggcaaacatcagaagaggaaagttc 1314
||||| ||||| || || ||||| ||||||||||| |||||||| | |||||||||||||
Sbjct: 194 gtattaccacaagctaatgcaggtccaactttccaagcaaacatgataagaggaaagttc 253
Query: 1315 catgggatgatctgacctgcaactccaattggctcatgcaagatctgtacatggtgtggg 1374
|| ||||| ||||| || ||||| ||||| || |||||||| | || ||||||||
Sbjct: 254 caagggattatctgtccggcaacaccaatgggttcatgcaatgtttgaacatggtgatta 313
Query: 1375 ccatcagccggcacaatgagcccatggatcttatcagcccaaccagcatagtaacg 1430
||||| || || || | || |||||||| || || ||||||||||||||||||||
Sbjct: 314 ccatccgctggaactgttagtccatggattttgtctgcccaaccagcatagtaacg 369
Score = 81.8 bits (41), Expect = 1e-013
Identities = 89/105 (84%)
Strand = Plus / Plus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||||||||||||||| || |||||||| || || ||||| |||
Sbjct: 503 gacctttcataagcactcatcttcggccatggtccctcatcaaatgctttacgagcagca 562
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatga 1668
|||||||||||||| | || || || ||||| ||||||||||||
Sbjct: 563 gctactgcacggttgacatcttcagcatcaccttcagccacatga 607
Score = 56.0 bits (28), Expect = 6e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1081 gatccagtaaatgcgatcttatcaacatccatgtgactagcaagagcagcaccagc 1136
|||||||| || || ||||| || ||||||||||||| ||||||||| ||||||||
Sbjct: 20 gatccagtgaaagcaatcttgtccacatccatgtgacgagcaagagctgcaccagc 75
>gb|CF936799.1|CF936799 PO3010E03 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 381
Score = 81.8 bits (41), Expect = 1e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 1255 gtatttccacatgccaaagcagggccaactttccaggcaaacatcagaagaggaaagttc 1314
||||| ||||| || || ||||| ||||||||||| |||||||| | |||||||||||||
Sbjct: 192 gtattaccacaagctaatgcaggtccaactttccaagcaaacatgataagaggaaagttc 133
Query: 1315 catgggatgatctgacctgcaactccaattggctcatgcaa 1355
|| ||||| ||||| || ||||| ||||| || ||||||||
Sbjct: 132 caagggattatctgtccggcaacaccaatgggttcatgcaa 92
Score = 56.0 bits (28), Expect = 6e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1081 gatccagtaaatgcgatcttatcaacatccatgtgactagcaagagcagcaccagc 1136
|||||||| || || ||||| || ||||||||||||| ||||||||| ||||||||
Sbjct: 366 gatccagtgaaagcaatcttgtccacatccatgtgacaagcaagagctgcaccagc 311
>gb|BI070813.1|BI070813 C045P37U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 360
Score = 77.8 bits (39), Expect = 2e-012
Identities = 118/142 (83%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 1580 tcatcttcggccatggcccttcatcaaaagccttgcgagccgcagctactgcacggttaa 1639
|||||||||||||||||||| ||||||| || || ||| | ||||||||||||||||| |
Sbjct: 359 tcatcttcggccatggccct-catcaaatgctttacga-cagcagctactgcacggttga 302
Query: 1640 tgtcctctgcgtcaccctcagccacatgagcaatcacctcccctgtacgagggtccagag 1699
|| || | ||||| |||||||||||||||||||| || || |||||||| || | |
Sbjct: 301 catcttcagnatcaccttcagccacatgagcaatcacttctccagtacgaggatcatgtg 242
Query: 1700 ttgggaaggtcttgccggatgc 1721
|||| ||||| ||||| |||||
Sbjct: 241 ttggaaaggttttgccagatgc 220
>gb|DV465196.1|DV465196 MTUNUL1.P36.D09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 484
Score = 75.8 bits (38), Expect = 6e-012
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 1255 gtatttccacatgccaaagcagggccaactttccaggcaaacatcagaagaggaaagttc 1314
||||| |||||||| || ||||| ||||||| ||| |||| ||| | |||||||||||||
Sbjct: 434 gtattaccacatgctaatgcaggcccaacttnccaagcaagcatgataagaggaaagttc 375
Query: 1315 catgggatgatctgacctgcaactccaattggctcatgcaa 1355
||||| || ||||| || ||||| ||||| || ||||||||
Sbjct: 374 catggaattatctgtccagcaacaccaatgggttcatgcaa 334
Score = 60.0 bits (30), Expect = 4e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||| || |||||||| || |||||||| || || ||||| |||
Sbjct: 125 gacctttcataagcactcatttttggccatggtccctcatcaaacgctttacgagcagca 66
Query: 1624 gctactgcacggtt 1637
||||||||||||||
Sbjct: 65 gctactgcacggtt 52
>gb|BU821422.1|BU821422 UB22CPH10 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 428
Score = 71.9 bits (36), Expect = 1e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||| || |||||||| || |||||||| || || ||||| |||
Sbjct: 401 gacctttcataagcactcatttttggccatgggccctcatcaaacgctttacgagcagca 342
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || ||||| |||||||| ||||||||||| || |||
Sbjct: 341 gctactgcacggttgacatcttcattatcaccttcagccacgtgagcaatcacttctcct 282
Query: 1684 gtacgagg 1691
||||||||
Sbjct: 281 gtacgagg 274
>gb|DT500404.1|DT500404 PX0015.BR_F22 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_F22
5', mRNA sequence
Length = 691
Score = 71.9 bits (36), Expect = 1e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 1564 gacctctcataggcagtcatcttcggccatggcccttcatcaaaagccttgcgagccgca 1623
||||| ||||| ||| |||| || |||||||| || |||||||| || || ||||| |||
Sbjct: 398 gacctttcataagcactcatttttggccatggtccctcatcaaacgctttacgagcagca 339
Query: 1624 gctactgcacggttaatgtcctctgcgtcaccctcagccacatgagcaatcacctcccct 1683
|||||||||||||| | || || ||||| |||||||| ||||||||||| || |||
Sbjct: 338 gctactgcacggttgacatcttcattatcaccttcagccacgtgagcaatcacttctcct 279
Query: 1684 gtacgagg 1691
||||||||
Sbjct: 278 gtacgagg 271
Score = 61.9 bits (31), Expect = 1e-007
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||| ||| | |||||||||||||||||| || ||||| ||
Sbjct: 688 gcaggcccaactttccaagcaagcatgataagaggaaagttccatggaat-atctgtcca 630
Query: 1333 gcaactccaattggctcatgcaa 1355
||||| ||||| || ||||||||
Sbjct: 629 gcaacaccaatgggttcatgcaa 607
>gb|BU884745.1|BU884745 R014H12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 555
Score = 61.9 bits (31), Expect = 1e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 796 tgttcaacacctttcctgaacggatcaccaacgacgcgcttcaatgcacgagccttggcc 855
||||||||||| ||| |||| ||||| ||||| ||||| | | ||||| ||||| ||
Sbjct: 392 tgttcaacacccttcttgaagggatcgccaacaacgcgtcttagagcacgtgcctttgct 333
Query: 856 ttctccacaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcag 915
||||| || |||||||| || ||||| ||||||||| | || ||||| ||||| || ||
Sbjct: 332 ttctctacgaactcatcgtacacacgttcatgtacatatgtacgagaaccagcacaacaa 273
Query: 916 cattgtccctg 926
|||||||||||
Sbjct: 272 cattgtccctg 262
Score = 44.1 bits (22), Expect = 0.023
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 923 cctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatc 980
|||| ||||||||||| ||| ||| |||||||| ||||| | ||||||||||||||
Sbjct: 185 cctgattaaagaacagagcatggtgtgcaagctccacagccttatcaacatcagcatc 128
>gb|CX178672.1|CX178672 F12_45-9_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 652
Score = 61.9 bits (31), Expect = 1e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1349 catgcaagatctgtacatggtgtgggccatcagccggcacaatgagcccatggatcttat 1408
|||||||| |||||||||| | ||| |||||||| || || |||| |||||||| ||||
Sbjct: 652 catgcaaggtctgtacatgatatggcccatcagcaggaactgtgaggccatggattttat 593
Query: 1409 cagcccaaccagcatagta 1427
| ||||| |||||||||||
Sbjct: 592 ctgcccacccagcatagta 574
Score = 42.1 bits (21), Expect = 0.090
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1588 ggccatggcccttcatcaaaagccttgcg 1616
||||| || ||||||||||||||||||||
Sbjct: 413 ggccacggtccttcatcaaaagccttgcg 385
>gb|AI164881.1|AI164881 A070P24U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 335
Score = 60.0 bits (30), Expect = 4e-007
Identities = 105/130 (80%)
Strand = Plus / Minus
Query: 1030 ttaaggttgctctttgcagccaactcgagaataatttttccagtatcggtagatccagta 1089
||||||||||| |||||||| | || || |||||||| ||||| || || ||||||||
Sbjct: 211 ttaaggttgctttttgcagcaagttcaagtataattttaccagtttcagttgatccagtg 152
Query: 1090 aatgcgatcttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaa 1149
|| || | ||| || |||| |||||| ||||||||||| ||||| ||| | || ||| |
Sbjct: 151 aaagcaagcttgtccacattcatgtggctagcaagagctgcaccggcacttggaccatag 92
Query: 1150 ccagaaacga 1159
||||||||||
Sbjct: 91 ccagaaacga 82
>gb|CA933918.1|CA933918 MTU3TS.P14.D04 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 537
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcatcgaagac 446
||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 115 ctcatcttgtatccaccaaaaggaatggcagcatcgaagac 155
Score = 52.0 bits (26), Expect = 9e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 580 aggtctttgaacttgaggatcgactgcacaggcccaaatatctcctcctgagcaatcttc 639
||||| ||||| || | ||| ||||| || ||||||||||||||||||| || ||| |
Sbjct: 289 aggtccttgaatttaaagatggactgaacgggcccaaatatctcctcctttgctatcagc 348
Query: 640 atgccgtcctggacatctgagaaaatcgttggctggat 677
||| | ||||| ||||||||||||| || ||||||||
Sbjct: 349 atgtcatcctgaacatctgagaaaacagtgggctggat 386
>gb|CA934253.1|CA934253 MTU3TS.P5.B08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 537
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcatcgaagac 446
||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 423 ctcatcttgtatccaccaaaaggaatggcagcatcgaagac 383
Score = 52.0 bits (26), Expect = 9e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 580 aggtctttgaacttgaggatcgactgcacaggcccaaatatctcctcctgagcaatcttc 639
||||| ||||| || | ||| ||||| || ||||||||||||||||||| || ||| |
Sbjct: 249 aggtccttgaatttaaagatggactgaacgggcccaaatatctcctcctttgctatcagc 190
Query: 640 atgccgtcctggacatctgagaaaatcgttggctggat 677
||| | ||||| ||||||||||||| || ||||||||
Sbjct: 189 atgtcatcctgaacatctgagaaaacagtgggctggat 152
>gb|CK089237.1|CK089237 B006P10.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B006P10 3', mRNA sequence
Length = 655
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcatcgaagac 446
||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 281 ctcatcttgtatccaccaaaaggaatggcagcatcgaagac 321
Score = 52.0 bits (26), Expect = 9e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 580 aggtctttgaacttgaggatcgactgcacaggcccaaatatctcctcctgagcaatcttc 639
||||| ||||| || | ||| ||||| || ||||||||||||||||||| || ||| |
Sbjct: 455 aggtccttgaatttaaagatggactgaactggcccaaatatctcctcctttgctatcagc 514
Query: 640 atgccgtcctggacatctgagaaaatcgttggctggat 677
||| | ||||| ||||||||||||| || ||||||||
Sbjct: 515 atgtcatcctgaacatctgagaaaacagtgggctggat 552
>gb|CX660295.1|CX660295 PO01011F02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01011F02 5', mRNA sequence
Length = 552
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcatcgaagac 446
||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 237 ctcatcttgtatccaccaaaaggaatggcagcatcgaagac 197
Score = 40.1 bits (20), Expect = 0.35
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 601 gactgcacaggcccaaatatctcctcct 628
||||| || |||||||||||||||||||
Sbjct: 42 gactgaactggcccaaatatctcctcct 15
>gb|BP935724.1|BP935724 BP935724 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-080_C06.r 3', mRNA sequence
Length = 652
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcatcgaagac 446
||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 302 ctcatcttgtatccaccaaaaggaatggcagcatcgaagac 342
Score = 52.0 bits (26), Expect = 9e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 580 aggtctttgaacttgaggatcgactgcacaggcccaaatatctcctcctgagcaatcttc 639
||||| ||||| || | ||| ||||| || ||||||||||||||||||| || ||| |
Sbjct: 476 aggtccttgaatttaaagatggactgaactggcccaaatatctcctcctttgctatcagc 535
Query: 640 atgccgtcctggacatctgagaaaatcgttggctggat 677
||| | ||||| ||||||||||||| || ||||||||
Sbjct: 536 atgtcatcctgaacatctgagaaaacagtgggctggat 573
>gb|CA933597.1|CA933597 MTU3TS.P10.H11 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 164
Score = 56.0 bits (28), Expect = 6e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1081 gatccagtaaatgcgatcttatcaacatccatgtgactagcaagagcagcaccagc 1136
|||||||| || || ||||| || ||||||||||||| ||||||||| ||||||||
Sbjct: 9 gatccagtgaaagcaatcttgtccacatccatgtgacgagcaagagctgcaccagc 64
>gb|BI072396.1|BI072396 C074P96U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 369
Score = 54.0 bits (27), Expect = 2e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 1651 tcaccctcagccacatgagcaatcacctcccctgtacgagggtccagagttgggaaggtc 1710
||||| |||||||||||||||||||| || || |||||||| || | ||||| |||||
Sbjct: 355 tcaccttcagccacatgagcaatcacttctccagtacgaggatcatgtgttggaaaggtt 296
Query: 1711 ttgccggatgc 1721
||||| |||||
Sbjct: 295 ttgccagatgc 285
>gb|CA926423.1|CA926423 MTU6CR.P14.H04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 429
Score = 52.0 bits (26), Expect = 9e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcatcgaa 443
||||||||||| |||||||| ||||| |||||||||||
Sbjct: 115 ctcatcttgtatccaccaaaaggaatggcagcatcgaa 152
>gb|CA927044.1|CA927044 MTU6CR.P4.C03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 537
Score = 52.0 bits (26), Expect = 9e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 580 aggtctttgaacttgaggatcgactgcacaggcccaaatatctcctcctgagcaatcttc 639
||||| ||||| || | ||| ||||| || ||||||||||||||||||| || ||| |
Sbjct: 249 aggtccttgaatttaaagatggactgaactggcccaaatatctcctcctttgctatcagc 190
Query: 640 atgccgtcctggacatctgagaaaatcgttggctggat 677
||| | ||||| ||||||||||||| || ||||||||
Sbjct: 189 atgtcatcctgaacatctgagaaaacagtgggctggat 152
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcatcgaagac 446
||||||||||| |||||||| ||||| | ||||||||||||
Sbjct: 423 ctcatcttgtatccaccaaaaggaatggtagcatcgaagac 383
>gb|DT485951.1|DT485951 WS02529.B21_J22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02529_J22 3', mRNA sequence
Length = 797
Score = 52.0 bits (26), Expect = 9e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcatcgaa 443
||||||||||| |||||||| ||||| |||||||||||
Sbjct: 405 ctcatcttgtatccaccaaaaggaatggcagcatcgaa 442
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 610 ggcccaaatatctcctcctgagcaatcttcatgccgtcctggacatctgagaaaatcgtt 669
||||||||||||||||||| || ||| |||| | ||||| ||||||||||||| ||
Sbjct: 609 ggcccaaatatctcctcctttgctatcagcatgtcatcctgaacatctgagaaaacagtg 668
Query: 670 ggctggat 677
||||||||
Sbjct: 669 ggctggat 676
>gb|DN488090.1|DN488090 R032A09.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone V017A09 3', mRNA sequence
Length = 713
Score = 50.1 bits (25), Expect = 4e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 796 tgttcaacacctttcctgaacggatcaccaacgacgcgcttcaatgcacgagccttggcc 855
||||||||||| ||| |||| ||||| ||||| ||||| | | ||||| ||||| ||
Sbjct: 593 tgttcaacacccttcttgaagggatcgccaacaacgcgtcttagagcacgtgcctttgct 652
Query: 856 ttctccacaaactcatcataaacacgctcatgtacaaacgtgcgagatccagc 908
||||| || |||||||| || ||||| ||||||||| | || ||||| |||||
Sbjct: 653 ttctctacgaactcatcgtacacacgttcatgtacatatgtacgagagccagc 705
>gb|CV228282.1|CV228282 WS0191.B21_J20 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_J20 3', mRNA sequence
Length = 651
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 586 ttgaacttgaggatcgactgcacaggcccaaatatctcctcctgagc 632
|||||||| | ||| ||||||||||| ||||| ||||| ||||||||
Sbjct: 235 ttgaacttcaagatggactgcacaggaccaaagatctcatcctgagc 189
>gb|CV252598.1|CV252598 PX0015.B21_F22 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_F22 3', mRNA sequence
Length = 565
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 586 ttgaacttgaggatcgactgcacaggcccaaatatctcctcctgagc 632
|||||||| | ||| ||||||||||| ||||| ||||| ||||||||
Sbjct: 422 ttgaacttcaagatggactgcacagggccaaagatctcatcctgagc 468
>gb|CA932458.1|CA932458 MTU5CS.P13.C03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 536
Score = 44.1 bits (22), Expect = 0.023
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 406 ctcatcttgtacccaccaaacggaatcgcagcat 439
||||||||||| |||||||| ||||| |||||||
Sbjct: 422 ctcatcttgtatccaccaaaaggaatggcagcat 389
Score = 42.1 bits (21), Expect = 0.090
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 580 aggtctttgaacttgaggatcgactgcacaggcccaaatatctcctcctgagcaatcttc 639
||||| ||||| || | ||| ||||| || ||||||||||||||||||| || ||| |
Sbjct: 248 aggtccttgaatttaaagatggactgaacgggcccaaatatctcctcctatgctatcagc 189
Query: 640 atgccgtcctggacatctgagaaaa 664
||| | |||| |||||||||||||
Sbjct: 188 atgtcatcctaaacatctgagaaaa 164
>gb|CV239696.1|CV239696 WS0233.B21_D08 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_D08
3', mRNA sequence
Length = 724
Score = 42.1 bits (21), Expect = 0.090
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 90 atcaaaaagaaacaaaataaa 110
|||||||||||||||||||||
Sbjct: 580 atcaaaaagaaacaaaataaa 560
>gb|CF216342.1|CF216342 PT1173 Hybrid aspen xylem up-regulated Populus alba x Populus
tremula cDNA clone PT1173, mRNA sequence
Length = 188
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 766 ttgaattgctcgtcgtcaatctgc 789
||||||||| ||||||||||||||
Sbjct: 159 ttgaattgcacgtcgtcaatctgc 182
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 244,107
Number of Sequences: 369679
Number of extensions: 244107
Number of successful extensions: 68958
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 68808
Number of HSP's gapped (non-prelim): 141
length of query: 2214
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2194
effective length of database: 196,015,084
effective search space: 430057094296
effective search space used: 430057094296
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)