BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716424.2.3
(1842 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT480837.1|DT480837 WS02530.BR_B06 PT-MB-N-A-15 Populus ... 40 0.29
gb|DT507469.1|DT507469 WS02418.BR_F14 PTxD-ICC-N-A-14 Popul... 40 0.29
gb|DT509167.1|DT509167 WS02422.BR_P21 PTxD-ICC-N-A-14 Popul... 40 0.29
gb|DT513783.1|DT513783 WS02422.B21_P21 PTxD-ICC-N-A-14 Popu... 40 0.29
gb|DT517685.1|DT517685 WS02435.B21_A06 PTxD-ICC-N-A-14 Popu... 40 0.29
gb|DV464535.1|DV464535 MTUNUL1.P28.G07 NUL Populus fremonti... 40 0.29
>gb|DT480837.1|DT480837 WS02530.BR_B06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_B06 5', mRNA sequence
Length = 858
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 169 caagccgccgctccctccct 188
||||||||||||||||||||
Sbjct: 271 caagccgccgctccctccct 290
>gb|DT507469.1|DT507469 WS02418.BR_F14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_F14 5', mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 169 caagccgccgctccctccct 188
||||||||||||||||||||
Sbjct: 106 caagccgccgctccctccct 125
>gb|DT509167.1|DT509167 WS02422.BR_P21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_P21 5', mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 169 caagccgccgctccctccct 188
||||||||||||||||||||
Sbjct: 24 caagccgccgctccctccct 43
>gb|DT513783.1|DT513783 WS02422.B21_P21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_P21 3', mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 169 caagccgccgctccctccct 188
||||||||||||||||||||
Sbjct: 607 caagccgccgctccctccct 588
>gb|DT517685.1|DT517685 WS02435.B21_A06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_A06 3', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 169 caagccgccgctccctccct 188
||||||||||||||||||||
Sbjct: 607 caagccgccgctccctccct 588
>gb|DV464535.1|DV464535 MTUNUL1.P28.G07 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 835
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 169 caagccgccgctccctccct 188
||||||||||||||||||||
Sbjct: 395 caagccgccgctccctccct 414
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,027
Number of Sequences: 369679
Number of extensions: 156027
Number of successful extensions: 41130
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41124
Number of HSP's gapped (non-prelim): 6
length of query: 1842
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1822
effective length of database: 196,015,084
effective search space: 357139483048
effective search space used: 357139483048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)