BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716394.2.1
(1074 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library ... 44 0.011
gb|CV246589.1|CV246589 WS01111.B21_D13 PT-P-FL-A-2 Populus ... 42 0.043
gb|CV250953.1|CV250953 WS0115.B21_F22 PT-P-FL-A-2 Populus t... 42 0.043
gb|DT498441.1|DT498441 WS0115.BR_F22 PT-P-FL-A-2 Populus tr... 42 0.043
gb|DT526779.1|DT526779 WS02048.C21_P03 PTxN-IB-N-A-11 Popul... 42 0.043
gb|BU867653.1|BU867653 M102G05 Populus flower cDNA library ... 40 0.17
gb|CK101981.1|CK101981 G058P91.5pR Populus tension wood cDN... 40 0.17
gb|CK107897.1|CK107897 G058P91 Populus tension wood cDNA li... 40 0.17
gb|CK112661.1|CK112661 S075B10 Populus imbibed seed cDNA li... 40 0.17
gb|AJ779430.1|AJ779430 AJ779430 Populus euphratica root 3-6... 40 0.17
gb|CV244846.1|CV244846 WS0255.B21_M15 PT-MB-N-A-15 Populus ... 40 0.17
gb|CX171167.1|CX171167 D10_69-119_08.ab1 leaf inoculated wi... 40 0.17
gb|DN489073.1|DN489073 S075B10.3pR Populus imbibed seed cDN... 40 0.17
gb|DN498815.1|DN498815 S075B10.5pR Populus imbibed seed cDN... 40 0.17
gb|DT472979.1|DT472979 WS01228.BR_D04 PT-GT-FL-A-3 Populus ... 40 0.17
gb|DT473130.1|DT473130 WS01228.BR_K17 PT-GT-FL-A-3 Populus ... 40 0.17
gb|DT481921.1|DT481921 WS02533.BR_F15 PT-MB-N-A-15 Populus ... 40 0.17
gb|DT487310.1|DT487310 WS02533.B21_F15 PT-MB-N-A-15 Populus... 40 0.17
gb|DT490824.1|DT490824 WS02546.C21.1_A24 PT-MB-N-A-15 Popul... 40 0.17
gb|DT517188.1|DT517188 WS02433.B21_J05 PTxD-ICC-N-A-14 Popu... 40 0.17
>gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 734
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 122 aggaggaggaggaggaagacga 101
>gb|CV246589.1|CV246589 WS01111.B21_D13 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_D13 3', mRNA sequence
Length = 602
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 990 gaggaggaggaggaagacgag 1010
|||||||||||||||||||||
Sbjct: 253 gaggaggaggaggaagacgag 233
>gb|CV250953.1|CV250953 WS0115.B21_F22 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_F22
3', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 990 gaggaggaggaggaagacgag 1010
|||||||||||||||||||||
Sbjct: 253 gaggaggaggaggaagacgag 233
>gb|DT498441.1|DT498441 WS0115.BR_F22 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_F22
5', mRNA sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 990 gaggaggaggaggaagacgag 1010
|||||||||||||||||||||
Sbjct: 565 gaggaggaggaggaagacgag 585
>gb|DT526779.1|DT526779 WS02048.C21_P03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_P03 3', mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 982 ggggcaaggaggaggaggagg 1002
|||||||||||||||||||||
Sbjct: 114 ggggcaaggaggaggaggagg 94
>gb|BU867653.1|BU867653 M102G05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagac 1007
||||||||||||||||||||
Sbjct: 192 aggaggaggaggaggaagac 173
>gb|CK101981.1|CK101981 G058P91.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G058P91 5', mRNA sequence
Length = 228
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 988 aggaggaggaggaggaagac 1007
||||||||||||||||||||
Sbjct: 172 aggaggaggaggaggaagac 191
>gb|CK107897.1|CK107897 G058P91 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G058P91 5', mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 988 aggaggaggaggaggaagac 1007
||||||||||||||||||||
Sbjct: 240 aggaggaggaggaggaagac 259
>gb|CK112661.1|CK112661 S075B10 Populus imbibed seed cDNA library Populus tremula cDNA clone
S075B10 5', mRNA sequence
Length = 220
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 47 aaggaggaggaggaggaaga 66
>gb|AJ779430.1|AJ779430 AJ779430 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800002F04F1, mRNA sequence
Length = 513
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 33 aaggaggaggaggaggaaga 14
>gb|CV244846.1|CV244846 WS0255.B21_M15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_M15
3', mRNA sequence
Length = 889
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 988 aggaggaggaggaggaagac 1007
||||||||||||||||||||
Sbjct: 796 aggaggaggaggaggaagac 815
>gb|CX171167.1|CX171167 D10_69-119_08.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 986 caaggaggaggaggaggaag 1005
||||||||||||||||||||
Sbjct: 95 caaggaggaggaggaggaag 76
>gb|DN489073.1|DN489073 S075B10.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S075B10 3', mRNA sequence
Length = 165
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 119 aaggaggaggaggaggaaga 100
>gb|DN498815.1|DN498815 S075B10.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S075B10 5', mRNA sequence
Length = 216
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 45 aaggaggaggaggaggaaga 64
>gb|DT472979.1|DT472979 WS01228.BR_D04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_D04 5', mRNA sequence
Length = 885
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 60 aaggaggaggaggaggaaga 41
>gb|DT473130.1|DT473130 WS01228.BR_K17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_K17 5', mRNA sequence
Length = 900
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 62 aaggaggaggaggaggaaga 43
>gb|DT481921.1|DT481921 WS02533.BR_F15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_F15 5', mRNA sequence
Length = 749
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 986 caaggaggaggaggaggaag 1005
||||||||||||||||||||
Sbjct: 60 caaggaggaggaggaggaag 41
>gb|DT487310.1|DT487310 WS02533.B21_F15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_F15 3', mRNA sequence
Length = 791
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 986 caaggaggaggaggaggaag 1005
||||||||||||||||||||
Sbjct: 766 caaggaggaggaggaggaag 785
>gb|DT490824.1|DT490824 WS02546.C21.1_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_A24 3', mRNA sequence
Length = 729
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 630 aaggaggaggaggaggaaga 649
>gb|DT517188.1|DT517188 WS02433.B21_J05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_J05 3', mRNA sequence
Length = 197
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 152 aaggaggaggaggaggaaga 171
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,454
Number of Sequences: 369679
Number of extensions: 129454
Number of successful extensions: 42520
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42448
Number of HSP's gapped (non-prelim): 47
length of query: 1074
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1055
effective length of database: 196,384,763
effective search space: 207185924965
effective search space used: 207185924965
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)