BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.2
(764 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT490518.1|DT490518 WS02545.B21_C23 PT-MB-N-A-15 Populus... 70 1e-010
gb|DT520315.1|DT520315 WS02447.B21_D12 PTxD-ICC-N-A-14 Popu... 66 2e-009
gb|CV257679.1|CV257679 WS0247.B21_F15 PTxD-ICC-N-A-14 Popul... 58 5e-007
gb|CX655944.1|CX655944 PO02043D05 Poplar SC cDNA library Po... 58 5e-007
gb|CF233986.1|CF233986 PtaJXO1A2A0202 Poplar cDNA library f... 56 2e-006
gb|CA825131.1|CA825131 R53H10 two-month-old roots from clon... 50 1e-004
gb|CV258748.1|CV258748 WS0201.B21_G13 PTxN-IB-N-A-11 Populu... 46 0.002
gb|CK097680.1|CK097680 UB58DPD05.3pR Populus active cambium... 42 0.031
gb|CN522696.1|CN522696 GQ0124.B3_M20 GQ012 Populus trichoca... 40 0.12
gb|CK320851.1|CK320851 X9SP07d03 Populus stem seasonal libr... 40 0.12
gb|DT487920.1|DT487920 WS02535.B21_A11 PT-MB-N-A-15 Populus... 40 0.12
gb|DT488469.1|DT488469 WS02536.B21_I10 PT-MB-N-A-15 Populus... 40 0.12
gb|CV258935.1|CV258935 WS0201.B21_O13 PTxN-IB-N-A-11 Populu... 38 0.48
gb|CX168563.1|CX168563 D02_69-62_08.ab1 leaf inoculated wit... 38 0.48
gb|DN483915.1|DN483915 PSO204E01 Populus tomentiglandulosa ... 38 0.48
gb|DV463160.1|DV463160 MTUNUL1.P12.E02 NUL Populus fremonti... 38 0.48
gb|DV466217.1|DV466217 MTUNUL1.P48.G10 NUL Populus fremonti... 38 0.48
>gb|DT490518.1|DT490518 WS02545.B21_C23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02545_C23 3', mRNA sequence
Length = 778
Score = 69.9 bits (35), Expect = 1e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 225 gttgatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaact 283
|||||||||||||| |||||||| || ||||||||||||||||| ||||| || |||||
Sbjct: 499 gttgatcggttgaaggagttgattaaatacaagggatatcaggtccctccggcggaact 441
>gb|DT520315.1|DT520315 WS02447.B21_D12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_D12 3', mRNA sequence
Length = 674
Score = 65.9 bits (33), Expect = 2e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 216 ctctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggt 268
||||||||||||||| || |||| || |||||||||||||||| |||||||||
Sbjct: 450 ctctacattgttgataggctgaaggaattgataaagtacaaggcatatcaggt 398
>gb|CV257679.1|CV257679 WS0247.B21_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_F15 3', mRNA sequence
Length = 818
Score = 58.0 bits (29), Expect = 5e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 216 ctctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggt 268
||||||||||||||| || | || || |||||||||||||||| |||||||||
Sbjct: 491 ctctacattgttgataggctaaaggaattgataaagtacaaggcatatcaggt 439
>gb|CX655944.1|CX655944 PO02043D05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043D05 5', mRNA sequence
Length = 379
Score = 58.0 bits (29), Expect = 5e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 216 ctctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggt 268
||||||||||||||| || | || || |||||||||||||||| |||||||||
Sbjct: 86 ctctacattgttgataggctaaaggaattgataaagtacaaggcatatcaggt 138
Score = 44.1 bits (22), Expect = 0.008
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 330 attccttatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaacca 389
||||| ||||| || ||||| || |||||| |||||||||| | | | ||||||||||||
Sbjct: 200 attccgtatcctgatgaagaggcagggcaaatcccaatggcctatgtcgtgaggaaacca 259
Query: 390 gg 391
||
Sbjct: 260 gg 261
>gb|CF233986.1|CF233986 PtaJXO1A2A0202 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 478
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 218 ctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggt 268
||||||||||||| || | || || |||||||||||||||| |||||||||
Sbjct: 298 ctacattgttgatnggctaaaggaattgataaagtacaaggcatatcaggt 348
>gb|CA825131.1|CA825131 R53H10 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 600
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 216 ctctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggt 268
|||||||||| |||| || | || || |||||||||||||||| |||||||||
Sbjct: 399 ctctacattgctgataggctaaaggaattgataaagtacaaggcatatcaggt 451
>gb|CV258748.1|CV258748 WS0201.B21_G13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_G13 3', mRNA sequence
Length = 722
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 225 gttgatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaact 283
||||||||||| || ||| |||| || |||||||| |||||||| ||||| || |||||
Sbjct: 689 gttgatcggttaaaggagctgattaaatacaagggttatcaggtccctccggcagaact 631
>gb|CK097680.1|CK097680 UB58DPD05.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB58DPD05 3', mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.031
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 417 atggatttcgtggctaaacaggtcgcaccctacaagaaagt 457
|||||||| || || |||||||| ||||| |||||||||||
Sbjct: 293 atggattttgttgcaaaacaggttgcaccatacaagaaagt 253
>gb|CN522696.1|CN522696 GQ0124.B3_M20 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0124_M20 5', mRNA sequence
Length = 474
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 210 gggttactctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggta 269
||||| || |||||||||||| || | || |||||||| || ||||||| || ||||||
Sbjct: 308 gggttcctttacattgttgataggctaaaggagttgattaaatacaaggcatttcaggtg 367
Query: 270 cctcctgc 277
|| |||||
Sbjct: 368 ccccctgc 375
>gb|CK320851.1|CK320851 X9SP07d03 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 879
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 210 gggttactctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggta 269
||||| || |||||||||||| || | || |||||||| || ||||||| || ||||||
Sbjct: 321 gggttcctttacattgttgataggctaaaggagttgattaaatacaaggcatttcaggtg 380
Query: 270 cctcctgc 277
|| |||||
Sbjct: 381 ccccctgc 388
>gb|DT487920.1|DT487920 WS02535.B21_A11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_A11 3', mRNA sequence
Length = 761
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 210 gggttactctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggta 269
||||| || |||||||||||| || | || |||||||| || ||||||| || ||||||
Sbjct: 683 gggttcctttacattgttgataggctaaaggagttgattaaatacaaggcatttcaggtg 624
Query: 270 cctcctgc 277
|| |||||
Sbjct: 623 ccccctgc 616
>gb|DT488469.1|DT488469 WS02536.B21_I10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_I10 3', mRNA sequence
Length = 796
Score = 40.1 bits (20), Expect = 0.12
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 210 gggttactctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggta 269
||||| || |||||||||||| || | || |||||||| || ||||||| || ||||||
Sbjct: 684 gggttcctttacattgttgataggctaaaggagttgattaaatacaaggcatttcaggtg 625
Query: 270 cctcctgc 277
|| |||||
Sbjct: 624 ccccctgc 617
>gb|CV258935.1|CV258935 WS0201.B21_O13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_O13 3', mRNA sequence
Length = 855
Score = 38.2 bits (19), Expect = 0.48
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 219 tacattgttgatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgc 277
|||||||||||| || | || |||||||| || ||||||| || |||||| || |||||
Sbjct: 743 tacattgttgataggctaaaggagttgattaaatacaaggcatttcaggtgccccctgc 685
>gb|CX168563.1|CX168563 D02_69-62_08.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 703
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 559 tttgaagtttgaagtttat 577
|||||||||||||||||||
Sbjct: 67 tttgaagtttgaagtttat 49
>gb|DN483915.1|DN483915 PSO204E01 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1026
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 559 tttgaagtttgaagtttat 577
|||||||||||||||||||
Sbjct: 100 tttgaagtttgaagtttat 82
>gb|DV463160.1|DV463160 MTUNUL1.P12.E02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 864
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 559 tttgaagtttgaagtttat 577
|||||||||||||||||||
Sbjct: 82 tttgaagtttgaagtttat 64
>gb|DV466217.1|DV466217 MTUNUL1.P48.G10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 823
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 559 tttgaagtttgaagtttat 577
|||||||||||||||||||
Sbjct: 72 tttgaagtttgaagtttat 54
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,182
Number of Sequences: 369679
Number of extensions: 72182
Number of successful extensions: 18450
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18409
Number of HSP's gapped (non-prelim): 41
length of query: 764
length of database: 203,408,664
effective HSP length: 19
effective length of query: 745
effective length of database: 196,384,763
effective search space: 146306648435
effective search space used: 146306648435
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)