BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716296.2.7
(851 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX178239.1|CX178239 C11_45-99_05.ab1 leaf inoculated wit... 60 1e-007
gb|CX180789.1|CX180789 D07_45-121_07.ab1 leaf inoculated wi... 60 1e-007
gb|CX182896.1|CX182896 F06_45-22_12.ab1 leaf inoculated wit... 60 1e-007
gb|CX184689.1|CX184689 A08_45-8_02.ab1 leaf inoculated with... 60 1e-007
gb|BU836699.1|BU836699 T089H01 Populus apical shoot cDNA li... 52 4e-005
gb|BP926394.1|BP926394 BP926394 full-length enriched poplar... 52 4e-005
gb|BP926799.1|BP926799 BP926799 full-length enriched poplar... 52 4e-005
gb|BP933965.1|BP933965 BP933965 full-length enriched poplar... 52 4e-005
gb|AI165224.1|AI165224 A079P04U Hybrid aspen plasmid librar... 46 0.002
gb|AI162188.1|AI162188 A013P41U Hybrid aspen plasmid librar... 44 0.009
gb|AI164185.1|AI164185 A056P64U Hybrid aspen plasmid librar... 44 0.009
gb|AI165083.1|AI165083 A074p77u Hybrid aspen plasmid librar... 44 0.009
gb|AI165193.1|AI165193 A078P17U Hybrid aspen plasmid librar... 44 0.009
gb|AI165291.1|AI165291 A080P48U Hybrid aspen plasmid librar... 44 0.009
gb|AI166511.1|AI166511 xylem.est.336 Poplar xylem Lambda ZA... 44 0.009
gb|BI069701.1|BI069701 C006P28U Populus strain T89 leaves P... 44 0.009
gb|BI072663.1|BI072663 C081P59U Populus strain T89 leaves P... 44 0.009
gb|BI072771.1|BI072771 C087P03U Populus strain T89 leaves P... 44 0.009
gb|BU817121.1|BU817121 UA13CPB12 Populus tremula cambium cD... 44 0.009
gb|BU819759.1|BU819759 UA47BPB12 Populus tremula cambium cD... 44 0.009
gb|BU828888.1|BU828888 K030P64P Populus apical shoot cDNA l... 44 0.009
gb|BU829583.1|BU829583 K044P65P Populus apical shoot cDNA l... 44 0.009
gb|BU830908.1|BU830908 T014F05 Populus apical shoot cDNA li... 44 0.009
gb|BU830943.1|BU830943 T015B04 Populus apical shoot cDNA li... 44 0.009
gb|BU831828.1|BU831828 T026C04 Populus apical shoot cDNA li... 44 0.009
gb|BU833647.1|BU833647 T050G07 Populus apical shoot cDNA li... 44 0.009
gb|BU834725.1|BU834725 T065A01 Populus apical shoot cDNA li... 44 0.009
gb|BU836528.1|BU836528 T087E05 Populus apical shoot cDNA li... 44 0.009
gb|BU837204.1|BU837204 T096A02 Populus apical shoot cDNA li... 44 0.009
gb|BU888197.1|BU888197 P004H11 Populus petioles cDNA librar... 44 0.009
gb|CF228353.1|CF228353 PtaXM0012A2A0202 Poplar cDNA library... 44 0.009
gb|CF230814.1|CF230814 PtaC0013E4E0410 Poplar cDNA library ... 44 0.009
gb|CF234877.1|CF234877 PtaJXT0016C11C1105 Poplar cDNA libra... 44 0.009
gb|CK116578.1|CK116578 B014P21 Hybrid aspen plasmid library... 44 0.009
gb|CK117360.1|CK117360 B048P65 Hybrid aspen plasmid library... 44 0.009
gb|CN519309.1|CN519309 GQ0103.B3_C22 GQ010 Populus trichoca... 44 0.009
gb|AJ773783.1|AJ773783 AJ773783 Populus euphratica shoot 3-... 44 0.009
gb|AJ777908.1|AJ777908 AJ777908 Populus euphratica root 3-6... 44 0.009
gb|AJ778519.1|AJ778519 AJ778519 Populus euphratica cambium ... 44 0.009
gb|AJ778928.1|AJ778928 AJ778928 Populus euphratica cambium ... 44 0.009
gb|AJ779101.1|AJ779101 AJ779101 Populus euphratica cambium ... 44 0.009
gb|AJ779163.1|AJ779163 AJ779163 Populus euphratica cambium ... 44 0.009
gb|AJ779891.1|AJ779891 AJ779891 Populus euphratica root 3-6... 44 0.009
gb|AJ780024.1|AJ780024 AJ780024 Populus euphratica root 3-6... 44 0.009
gb|CV227079.1|CV227079 WS0166.B21_C09 PT-DX-A-7 Populus tri... 44 0.009
gb|CV227370.1|CV227370 WS0166.B21_P20 PT-DX-A-7 Populus tri... 44 0.009
gb|CV233542.1|CV233542 WS01211.B21_G12 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV233754.1|CV233754 WS01212.B21_D23 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV233918.1|CV233918 WS01212.B21_O06 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV234021.1|CV234021 WS01213.B21_E14 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV234087.1|CV234087 WS01213.B21_J01 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV234300.1|CV234300 WS01214.B21_G17 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV234508.1|CV234508 WS01215.B21.1_C19 PT-GT-FL-A-3 Popul... 44 0.009
gb|CV235043.1|CV235043 WS01217.B21_H10 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV235341.1|CV235341 WS01218.B21_M04 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV235405.1|CV235405 WS01218.B21_P22 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV235489.1|CV235489 WS0122.B21_F11 PT-GT-FL-A-3 Populus ... 44 0.009
gb|CV236156.1|CV236156 WS01223.B21_A21 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV236560.1|CV236560 WS01224.B21.1_J01 PT-GT-FL-A-3 Popul... 44 0.009
gb|CV236983.1|CV236983 WS01226.B21.1_D02 PT-GT-FL-A-3 Popul... 44 0.009
gb|CV237129.1|CV237129 WS01226.B21_B12 PT-GT-FL-A-3 Populus... 44 0.009
gb|CV237593.1|CV237593 WS0123.B21_G03 PT-GT-FL-A-3 Populus ... 44 0.009
gb|CV238817.1|CV238817 WS0128.B21.1_C23 PT-GT-FL-A-3 Populu... 44 0.009
gb|CV238894.1|CV238894 WS0128.B21.1_I18 PT-GT-FL-A-3 Populu... 44 0.009
gb|CV246167.1|CV246167 WS0111.B21_I07 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV246379.1|CV246379 WS01110.B21_E02 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV246444.1|CV246444 WS01110.B21_I06 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV247926.1|CV247926 WS01119.B21_M24 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV247989.1|CV247989 WS0112.B21_A07 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV248045.1|CV248045 WS0112.B21_D17 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV248166.1|CV248166 WS0112.B21_K13 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV248395.1|CV248395 WS01120.B21_J06 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV248591.1|CV248591 WS01121.B21_E16 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV248977.1|CV248977 WS01122.B21_J21 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV249202.1|CV249202 WS01123.B21_F15 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV249249.1|CV249249 WS01123.B21_I09 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV249555.1|CV249555 WS01124.B21_J02 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV249668.1|CV249668 WS01124.B21_O23 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV249683.1|CV249683 WS01124.B21_P18 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV249846.1|CV249846 WS01125.B21_H23 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV249911.1|CV249911 WS01125.B21_L05 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV250146.1|CV250146 WS01126.B21_I17 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV250219.1|CV250219 WS01126.B21_N08 PT-P-FL-A-2 Populus ... 44 0.009
gb|CV250263.1|CV250263 WS0113.B21_A02 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV250379.1|CV250379 WS0113.B21_G01 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV250440.1|CV250440 WS0113.B21_J03 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV250495.1|CV250495 WS0113.B21_M01 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV250566.1|CV250566 WS0113.B21_P21 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV250582.1|CV250582 WS0114.B21_A23 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV251108.1|CV251108 WS0115.B21_N19 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV251196.1|CV251196 WS0116.B21_C13 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV251283.1|CV251283 WS0116.B21_H12 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV251659.1|CV251659 WS0117.B21_N18 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV251668.1|CV251668 WS0117.B21_O09 PT-P-FL-A-2 Populus t... 44 0.009
gb|CV251735.1|CV251735 WS0118.B21.1_G21 PT-P-FL-A-2 Populus... 44 0.009
gb|CV252872.1|CV252872 PX0019.B21.1_E18 PT-X-FL-A-1 Populus... 44 0.009
gb|CV254026.1|CV254026 WS0223.B21_M08 PTxD-ICC-A-12 Populus... 44 0.009
gb|CV256913.1|CV256913 WS0245.B21_C09 PTxD-ICC-N-A-14 Popul... 44 0.009
gb|CV259819.1|CV259819 WS02012.B21_F21 PTxN-IB-N-A-11 Popul... 44 0.009
gb|CV280078.1|CV280078 WS0134.B21_L04 PTxD-IL-FL-A-4 Populu... 44 0.009
gb|CV280936.1|CV280936 WS0138.B21_E20 PTxD-IL-FL-A-4 Populu... 44 0.009
gb|CX168977.1|CX168977 B03_69-90_03.ab1 leaf inoculated wit... 44 0.009
gb|CX169022.1|CX169022 H08_69-33_16.ab1 leaf inoculated wit... 44 0.009
gb|CX172289.1|CX172289 E02_69-12_10.ab1 leaf inoculated wit... 44 0.009
gb|CX173911.1|CX173911 B06_69-87_04.ab1 leaf inoculated wit... 44 0.009
gb|CX175702.1|CX175702 G10_69-49_14.ab1 leaf inoculated wit... 44 0.009
gb|CX176484.1|CX176484 B07_69-78_03.ab1 leaf inoculated wit... 44 0.009
gb|CX177511.1|CX177511 E07_45-18_09.ab1 leaf inoculated wit... 44 0.009
gb|CX179573.1|CX179573 E11_45-15_09.ab1 leaf inoculated wit... 44 0.009
gb|CX180774.1|CX180774 F07_45-58_11.ab1 leaf inoculated wit... 44 0.009
gb|CX183460.1|CX183460 D05_45-19_07.ab1 leaf inoculated wit... 44 0.009
gb|CX183733.1|CX183733 G04_45-70_14.ab1 leaf inoculated wit... 44 0.009
gb|CX184923.1|CX184923 A09_45-74_01.ab1 leaf inoculated wit... 44 0.009
gb|CX186282.1|CX186282 B01_45-29_03.ab1 leaf inoculated wit... 44 0.009
gb|DT470673.1|DT470673 WS01210.BR_C12 PT-GT-FL-A-3 Populus ... 44 0.009
gb|DT470900.1|DT470900 WS01211.BR_G12 PT-GT-FL-A-3 Populus ... 44 0.009
gb|DT471292.1|DT471292 WS01213.BR_E14 PT-GT-FL-A-3 Populus ... 44 0.009
gb|DT471368.1|DT471368 WS01213.BR_J01 PT-GT-FL-A-3 Populus ... 44 0.009
gb|DT471868.1|DT471868 WS0122.BR_F11 PT-GT-FL-A-3 Populus t... 44 0.009
gb|DT472374.1|DT472374 WS01226.BR.1_D02 PT-GT-FL-A-3 Populu... 44 0.009
gb|DT472499.1|DT472499 WS01226.BR_B12 PT-GT-FL-A-3 Populus ... 44 0.009
gb|DT473268.1|DT473268 WS01229.BR_B22 PT-GT-FL-A-3 Populus ... 44 0.009
gb|DT473393.1|DT473393 WS01229.BR_I09 PT-GT-FL-A-3 Populus ... 44 0.009
gb|DT473673.1|DT473673 WS0123.BR_G03 PT-GT-FL-A-3 Populus t... 44 0.009
gb|DT475541.1|DT475541 WS0127.BR_G24 PT-GT-FL-A-3 Populus t... 44 0.009
gb|DT475778.1|DT475778 WS0128.BR_C23 PT-GT-FL-A-3 Populus t... 44 0.009
gb|DT476311.1|DT476311 WS01229.B21_B22 PT-GT-FL-A-3 Populus... 44 0.009
gb|DT484341.1|DT484341 WS02525.B21_C07 PT-MB-N-A-15 Populus... 44 0.009
gb|DT493488.1|DT493488 WS0111.BR_I07 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT494893.1|DT494893 WS01119.BR_L23 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT494917.1|DT494917 WS01119.BR_M24 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT494986.1|DT494986 WS0112.BR_A07 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT495053.1|DT495053 WS0112.BR_D17 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT495189.1|DT495189 WS0112.BR_K13 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT495412.1|DT495412 WS01120.BR_G07 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT495474.1|DT495474 WS01120.BR_J06 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT495718.1|DT495718 WS01121.BR_E16 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT496285.1|DT496285 WS01122.BR_P14 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT496418.1|DT496418 WS01123.BR_F15 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT496473.1|DT496473 WS01123.BR_I09 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT496807.1|DT496807 WS01124.BR_J02 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT496930.1|DT496930 WS01124.BR_P18 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT497104.1|DT497104 WS01125.BR_H23 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT497460.1|DT497460 WS01126.BR_I17 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT497561.1|DT497561 WS01126.BR_N08 PT-P-FL-A-2 Populus t... 44 0.009
gb|DT497621.1|DT497621 WS0113.BR_A02 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT497750.1|DT497750 WS0113.BR_G01 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT497822.1|DT497822 WS0113.BR_J03 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT497886.1|DT497886 WS0113.BR_M01 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT497967.1|DT497967 WS0113.BR_P21 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT498294.1|DT498294 WS0114.BR_O24 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT498617.1|DT498617 WS0115.BR_N19 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT498713.1|DT498713 WS0116.BR_C13 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT498826.1|DT498826 WS0116.BR_H12 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT499227.1|DT499227 WS0117.BR_K18 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT499285.1|DT499285 WS0117.BR_N18 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT499297.1|DT499297 WS0117.BR_O09 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT499480.1|DT499480 WS0118.BR_G21 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT499604.1|DT499604 WS0118.BR_M11 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT499704.1|DT499704 WS9991.BR_B17 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT499899.1|DT499899 WS9991.BR_K16 PT-P-FL-A-2 Populus tr... 44 0.009
gb|DT500641.1|DT500641 PX0019.BR.1_E18 PT-X-FL-A-1 Populus ... 44 0.009
gb|DT500737.1|DT500737 PX0019.BR_A01 PT-X-FL-A-1 Populus tr... 44 0.009
gb|DT501754.1|DT501754 WS01314.BR_B07 PTxD-IL-FL-A-4 Populu... 44 0.009
gb|DT502431.1|DT502431 WS0132.BR_P05 PTxD-IL-FL-A-4 Populus... 44 0.009
gb|DT502910.1|DT502910 WS0134.BR_L04 PTxD-IL-FL-A-4 Populus... 44 0.009
gb|DT503915.1|DT503915 WS0138.BR_E20 PTxD-IL-FL-A-4 Populus... 44 0.009
gb|DT504323.1|DT504323 WS01312.B21_O13 PTxD-IL-FL-A-4 Popul... 44 0.009
gb|DT504614.1|DT504614 WS01314.B21_B07 PTxD-IL-FL-A-4 Popul... 44 0.009
>gb|CX178239.1|CX178239 C11_45-99_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 439
Score = 60.0 bits (30), Expect = 1e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgttaac 365
||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 207 atgaacggccaggacctcgatggccgtaacatcaccgttaac 248
>gb|CX180789.1|CX180789 D07_45-121_07.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 671
Score = 60.0 bits (30), Expect = 1e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgttaac 365
||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 238 atgaacggccaggacctcgatggccgtaacatcaccgttaac 279
>gb|CX182896.1|CX182896 F06_45-22_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 736
Score = 60.0 bits (30), Expect = 1e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgttaac 365
||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 267 atgaacggccaggacctcgatggccgtaacatcaccgttaac 308
>gb|CX184689.1|CX184689 A08_45-8_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 604
Score = 60.0 bits (30), Expect = 1e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgttaac 365
||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 241 atgaacggccaggacctcgatggccgtaacatcaccgttaac 282
>gb|BU836699.1|BU836699 T089H01 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 352
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
||||||||| |||| ||||| |||||||||||||||||
Sbjct: 269 atgaacggccaggacctcgatggccgtaacatcaccgt 306
>gb|BP926394.1|BP926394 BP926394 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-058_K07.f 5', mRNA sequence
Length = 415
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgttaac 365
|||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 260 atgaacggtcaggacctcgatggccgtaacatcaccgttaac 301
>gb|BP926799.1|BP926799 BP926799 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-063_N03.f 5', mRNA sequence
Length = 429
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgttaac 365
||||||||| |||| |||| |||||||||||||||||||||
Sbjct: 260 atgaacggccaggacctcgttggccgtaacatcaccgttaac 301
>gb|BP933965.1|BP933965 BP933965 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-058_K07.r 3', mRNA sequence
Length = 640
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgttaac 365
|||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 520 atgaacggtcaggacctcgatggccgtaacatcaccgttaac 479
>gb|AI165224.1|AI165224 A079P04U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 239
Score = 46.1 bits (23), Expect = 0.002
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 173 atgaacggncaggacctcgatggccgtaacatcaccgt 210
>gb|AI162188.1|AI162188 A013P41U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 449
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 231 atgaacggtcaggacctcgatggccgtaacatcaccgt 268
>gb|AI164185.1|AI164185 A056P64U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 280
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 180 atgaacggtcaggacctcgatggccgtaacatcaccgt 217
>gb|AI165083.1|AI165083 A074p77u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 297
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 227 atgaacggtcaggacctcgatggccgtaacatcaccgt 264
>gb|AI165193.1|AI165193 A078P17U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 321
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 198 atgaacggtcaggacctcgatggccgtaacatcaccgt 235
>gb|AI165291.1|AI165291 A080P48U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 276
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 167 atgaacggtcaggacctcgatggccgtaacatcaccgt 204
>gb|AI166511.1|AI166511 xylem.est.336 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 371
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 246 atgaacggtcaggacctcgatggccgtaacatcaccgt 283
>gb|BI069701.1|BI069701 C006P28U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 268
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 208 atgaacggtcaggacctcgatggccgtaacatcaccgt 245
>gb|BI072663.1|BI072663 C081P59U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 200
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 137 atgaacgggcaggacctcgatggccgtaacatcaccgt 174
>gb|BI072771.1|BI072771 C087P03U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 305
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 247 atgaacggtcaggacctcgatggccgtaacatcaccgt 284
>gb|BU817121.1|BU817121 UA13CPB12 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 505
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 269 atgaacggtcaggacctcgatggccgtaacatcaccgt 306
>gb|BU819759.1|BU819759 UA47BPB12 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 590
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 123 atgaacggtcaggacctcgatggccgtaacatcaccgt 160
>gb|BU828888.1|BU828888 K030P64P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 246 atgaacggtcaggacctcgatggccgtaacatcaccgt 283
>gb|BU829583.1|BU829583 K044P65P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 299
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 237 atgaacggtcaggacctcgatggccgtaacatcaccgt 274
>gb|BU830908.1|BU830908 T014F05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 356
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 235 atgaacggtcaggacctcgatggccgtaacatcaccgt 272
>gb|BU830943.1|BU830943 T015B04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 559
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 240 atgaacggtcaggacctcgatggccgtaacatcaccgt 277
>gb|BU831828.1|BU831828 T026C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 367
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 239 atgaacggtcaggacctcgatggccgtaacatcaccgt 276
>gb|BU833647.1|BU833647 T050G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 390
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 275 atgaacggtcaggacctcgatggccgtaacatcaccgt 312
>gb|BU834725.1|BU834725 T065A01 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 523
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 266 atgaacggtcaggacctcgatggccgtaacatcaccgt 303
>gb|BU836528.1|BU836528 T087E05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 518 atgaacggtcaggacctcgatggccgtaacatcaccgt 555
>gb|BU837204.1|BU837204 T096A02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 384
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 263 atgaacggtcaggacctcgatggccgtaacatcaccgt 300
>gb|BU888197.1|BU888197 P004H11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 421
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 268 atgaacggtcaggacctcgatggccgtaacatcaccgt 305
>gb|CF228353.1|CF228353 PtaXM0012A2A0202 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 486
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 265 atgaacggtcaggacctcgatggccgtaacatcaccgt 302
>gb|CF230814.1|CF230814 PtaC0013E4E0410 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 254 atgaacggtcaggacctcgatggccgtaacatcaccgt 291
>gb|CF234877.1|CF234877 PtaJXT0016C11C1105 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 546
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 273 atgaacggtcaggacctcgatggccgtaacatcaccgt 310
>gb|CK116578.1|CK116578 B014P21 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B014P21 5', mRNA sequence
Length = 388
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 233 atgaacggtcaggacctcgatggccgtaacatcaccgt 270
>gb|CK117360.1|CK117360 B048P65 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B048P65 5', mRNA sequence
Length = 277
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 216 atgaacggtcaggacctcgatggccgtaacatcaccgt 253
>gb|CN519309.1|CN519309 GQ0103.B3_C22 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0103_C22 5', mRNA sequence
Length = 399
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 238 atgaacggtcaggacctcgatggccgtaacatcaccgt 275
>gb|AJ773783.1|AJ773783 AJ773783 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300005A07F1, mRNA sequence
Length = 530
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 377 atgaacggtcaggacctcgatggccgtaacatcaccgt 414
>gb|AJ777908.1|AJ777908 AJ777908 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400036G12F1, mRNA sequence
Length = 461
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 239 atgaacggtcaggacctcgatggccgtaacatcaccgt 276
>gb|AJ778519.1|AJ778519 AJ778519 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600002B01F1, mRNA sequence
Length = 458
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 64 atgaacggtcaggacctcgatggccgtaacatcaccgt 101
>gb|AJ778928.1|AJ778928 AJ778928 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600008D10F1, mRNA sequence
Length = 702
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 253 atgaacggtcaggacctcgatggccgtaacatcaccgt 290
>gb|AJ779101.1|AJ779101 AJ779101 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600011D11F1, mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 17 atgaacggtcaggacctcgatggccgtaacatcaccgt 54
>gb|AJ779163.1|AJ779163 AJ779163 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600012F03F1, mRNA sequence
Length = 577
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 248 atgaacggtcaggacctcgatggccgtaacatcaccgt 285
>gb|AJ779891.1|AJ779891 AJ779891 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800009B07F1, mRNA sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 409 atgaacggtcaggacctcgatggccgtaacatcaccgt 446
>gb|AJ780024.1|AJ780024 AJ780024 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800010G12F1, mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 409 atgaacggtcaggacctcgatggccgtaacatcaccgt 446
>gb|CV227079.1|CV227079 WS0166.B21_C09 PT-DX-A-7 Populus trichocarpa cDNA clone WS0166_C09
3', mRNA sequence
Length = 895
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 513 atgaacggtcaggacctcgatggccgtaacatcaccgt 476
>gb|CV227370.1|CV227370 WS0166.B21_P20 PT-DX-A-7 Populus trichocarpa cDNA clone WS0166_P20
3', mRNA sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 254 atgaacggtcaggacctcgatggccgtaacatcaccgt 291
>gb|CV233542.1|CV233542 WS01211.B21_G12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_G12 3', mRNA sequence
Length = 755
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 515 atgaacggtcaggacctcgatggccgtaacatcaccgt 478
>gb|CV233754.1|CV233754 WS01212.B21_D23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01212_D23 3', mRNA sequence
Length = 815
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 515 atgaacggtcaggacctcgatggccgtaacatcaccgt 478
>gb|CV233918.1|CV233918 WS01212.B21_O06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01212_O06 3', mRNA sequence
Length = 844
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 545 atgaacggtcaggacctcgatggccgtaacatcaccgt 508
>gb|CV234021.1|CV234021 WS01213.B21_E14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_E14 3', mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 324 atgaacggcaaggagctcgacggccgtaacatcaccgt 361
|||||||| |||| ||||| |||||||||||||||||
Sbjct: 553 atgaacggtcaggacctcgatggccgtaacatcaccgt 516
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,500
Number of Sequences: 369679
Number of extensions: 54500
Number of successful extensions: 13762
Number of sequences better than 0.5: 170
Number of HSP's better than 0.5 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13450
Number of HSP's gapped (non-prelim): 312
length of query: 851
length of database: 203,408,664
effective HSP length: 19
effective length of query: 832
effective length of database: 196,384,763
effective search space: 163392122816
effective search space used: 163392122816
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)