BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus ... 84 8e-015
gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus... 84 8e-015
gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichoca... 76 2e-012
gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA li... 54 8e-006
gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA li... 54 8e-006
gb|CA823228.1|CA823228 R22G04 two-month-old roots from clon... 54 8e-006
gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus ... 54 8e-006
gb|BI130105.1|BI130105 G100P25Y Populus cambium cDNA librar... 52 3e-005
gb|BI138167.1|BI138167 F100P23Y Populus flower cDNA library... 52 3e-005
gb|CK103023.1|CK103023 G100P25.5pR Populus tension wood cDN... 52 3e-005
gb|CA931177.1|CA931177 MTU2TA.P3.D04 Aspen apex cDNA Librar... 44 0.007
gb|BI070217.1|BI070217 C016P17U Populus strain T89 leaves P... 34 7.0
gb|BI130381.1|BI130381 G104P86Y Populus cambium cDNA librar... 34 7.0
gb|BU831837.1|BU831837 T026D01 Populus apical shoot cDNA li... 34 7.0
gb|BU892359.1|BU892359 P062F08 Populus petioles cDNA librar... 34 7.0
gb|BU896860.1|BU896860 X047A05 Populus wood cDNA library Po... 34 7.0
gb|BU897254.1|BU897254 X054A12 Populus wood cDNA library Po... 34 7.0
gb|CA824020.1|CA824020 R35A06 two-month-old roots from clon... 34 7.0
gb|CK090838.1|CK090838 F027P19.3pR Populus flower cDNA libr... 34 7.0
gb|CK096268.1|CK096268 UA54DPB03.3pR Populus dormant cambiu... 34 7.0
gb|CK103128.1|CK103128 G104P86.5pR Populus tension wood cDN... 34 7.0
gb|CN520995.1|CN520995 GQ0108.B3_E12 GQ010 Populus trichoca... 34 7.0
gb|DN502948.1|DN502948 X047A05.5pR Populus wood cDNA librar... 34 7.0
gb|DT486577.1|DT486577 WS02531.B21_F24 PT-MB-N-A-15 Populus... 34 7.0
gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, comple... 34 7.0
>gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_O23 3', mRNA sequence
Length = 872
Score = 83.8 bits (42), Expect = 8e-015
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 402 tcaacattgagctggatcagatcatcgaggcatgtaagtttctggatgagaagtggtcac 461
||||||| ||||||||||| ||||| |||||||| ||||| || ||||| | |||||||
Sbjct: 822 tcaacatcgagctggatcaaatcattgaggcatgcaagttccttgatgaaagctggtcac 763
Query: 462 ccaagttcactgtgattgttgc 483
||||||||||||| ||||||||
Sbjct: 762 ccaagttcactgttattgttgc 741
Score = 75.8 bits (38), Expect = 2e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
|||||||||||||||||||| |||||||| |||||||||||||| || || ||||| |||
Sbjct: 555 ttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcacgtt 496
Query: 647 ct 648
||
Sbjct: 495 ct 494
>gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_G04 3', mRNA sequence
Length = 809
Score = 83.8 bits (42), Expect = 8e-015
Identities = 122/146 (83%), Gaps = 2/146 (1%)
Strand = Plus / Minus
Query: 402 tcaacattgagctggatcagatcatcgaggcatgtaagtttctggatgagaagtggtcac 461
||||||| ||||||||||| ||||| |||||||| ||||| || ||||| | |||||||
Sbjct: 725 tcaacatcgagctggatcaaatcattgaggcatgcaagttccttgatgaaagctggtcac 666
Query: 462 ccaagttcactgtgattgttgctcaaaagaaccaccacaccaagttctttca-gacggca 520
||||||||||||| |||||||| || || || || ||||| || || || || || || |
Sbjct: 665 ccaagttcactgttattgttgcacagaaaaatcatcacactaaatttttccaagatgg-a 607
Query: 521 tcaccagacaatgttcttcctggaac 546
|| ||||||||||||| |||||||||
Sbjct: 606 tctccagacaatgttcctcctggaac 581
Score = 75.8 bits (38), Expect = 2e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
|||||||||||||||||||| |||||||| |||||||||||||| || || ||||| |||
Sbjct: 540 ttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcacgtt 481
Query: 647 ct 648
||
Sbjct: 480 ct 479
>gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_L05 5', mRNA sequence
Length = 554
Score = 75.8 bits (38), Expect = 2e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
|||||||||||||||||||| |||||||| |||||||||||||| || || ||||| |||
Sbjct: 68 ttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcacgtt 127
Query: 647 ct 648
||
Sbjct: 128 ct 129
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 524 ccagacaatgttcttcctggaac 546
||||||||||||| |||||||||
Sbjct: 5 ccagacaatgttcctcctggaac 27
>gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 596 tgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
||||| ||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 103 tgtgctcatgctgggatgattgggactacaaggcctactcactaccatgtt 153
>gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 574
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 596 tgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
||||| ||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 175 tgtgctcatgctgggatgattgggactacaaggcctactcactaccatgtt 225
>gb|CA823228.1|CA823228 R22G04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 659
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 596 tgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
||||| ||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 461 tgtgctcatgctgggatgattgggactacaaggcctactcactaccatgtt 511
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 414 tggatcagatcatcgaggcatgtaagtttctggatgagaagtggtc 459
|||||||||| || ||||| || |||||||| ||||||||||||||
Sbjct: 279 tggatcagataattgaggcgtgcaagtttcttgatgagaagtggtc 324
>gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_P22 3', mRNA sequence
Length = 744
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 596 tgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
||||| ||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 656 tgtgctcatgctgggatgattgggactacaaggcctactcactaccatgtt 606
Score = 34.2 bits (17), Expect = 7.0
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 439 gtttctggatgagaagtggtc 459
|||||| ||||||||||||||
Sbjct: 743 gtttcttgatgagaagtggtc 723
>gb|BI130105.1|BI130105 G100P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 126
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
||||||||||||||||||||||||| |||||||
Sbjct: 88 tgaagatcaatgcaaagcttggtgggttgaactc 121
>gb|BI138167.1|BI138167 F100P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 514
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 414 tggatcagatcatcgaggcatgtaagtttctggatgagaagtggtc 459
|||||||||| || ||||| || |||||||| ||||||||||||||
Sbjct: 466 tggatcagataattgaggcgtgcaagtttcttgatgagaagtggtc 511
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
||||||||||||||||||||||||| |||||||
Sbjct: 67 tgaagatcaatgcaaagcttggtgggttgaactc 100
>gb|CK103023.1|CK103023 G100P25.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G100P25 5', mRNA sequence
Length = 463
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
||||||||||||||||||||||||| |||||||
Sbjct: 78 tgaagatcaatgcaaagcttggtgggttgaactc 111
>gb|CA931177.1|CA931177 MTU2TA.P3.D04 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 254
Score = 44.1 bits (22), Expect = 0.007
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 414 tggatcagatcatcgaggcatgtaagtttctggatgagaagtggtc 459
|||||||||| || ||||| || |||||||| | ||||||||||||
Sbjct: 127 tggatcagataattgaggcgtgcaagtttcttggtgagaagtggtc 82
>gb|BI070217.1|BI070217 C016P17U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 416
Score = 34.2 bits (17), Expect = 7.0
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 346 agaacacataattattttcag 366
||||||||||||||| |||||
Sbjct: 185 agaacacataattatcttcag 165
>gb|BI130381.1|BI130381 G104P86Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 350
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 447 atgagaagtggtcaccc 463
|||||||||||||||||
Sbjct: 202 atgagaagtggtcaccc 186
>gb|BU831837.1|BU831837 T026D01 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 499
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 447 atgagaagtggtcaccc 463
|||||||||||||||||
Sbjct: 350 atgagaagtggtcaccc 334
>gb|BU892359.1|BU892359 P062F08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 706
Score = 34.2 bits (17), Expect = 7.0
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 346 agaacacataattattttcag 366
||||||||||||||| |||||
Sbjct: 677 agaacacataattatcttcag 657
>gb|BU896860.1|BU896860 X047A05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 564
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 590 tacatgtgtgcacatgc 606
|||||||||||||||||
Sbjct: 240 tacatgtgtgcacatgc 256
>gb|BU897254.1|BU897254 X054A12 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 726
Score = 34.2 bits (17), Expect = 7.0
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 346 agaacacataattattttcag 366
||||||||||||||| |||||
Sbjct: 719 agaacacataattatcttcag 699
>gb|CA824020.1|CA824020 R35A06 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 569
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 447 atgagaagtggtcaccc 463
|||||||||||||||||
Sbjct: 140 atgagaagtggtcaccc 124
>gb|CK090838.1|CK090838 F027P19.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F027P19 3', mRNA sequence
Length = 680
Score = 34.2 bits (17), Expect = 7.0
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 635 cactatcatgttctgcacgacgagataggtttctctgcaga 675
||||||||||| ||| ||| ||||| ||||||||| ||||
Sbjct: 634 cactatcatgtcttgctcgatgagattggtttctctccaga 594
>gb|CK096268.1|CK096268 UA54DPB03.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA54DPB03 3', mRNA sequence
Length = 852
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 447 atgagaagtggtcaccc 463
|||||||||||||||||
Sbjct: 661 atgagaagtggtcaccc 677
>gb|CK103128.1|CK103128 G104P86.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G104P86 5', mRNA sequence
Length = 565
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 447 atgagaagtggtcaccc 463
|||||||||||||||||
Sbjct: 204 atgagaagtggtcaccc 188
>gb|CN520995.1|CN520995 GQ0108.B3_E12 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_E12 5', mRNA sequence
Length = 722
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 164 gttgcagcggtggttag 180
|||||||||||||||||
Sbjct: 95 gttgcagcggtggttag 79
>gb|DN502948.1|DN502948 X047A05.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X047A05 5', mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 590 tacatgtgtgcacatgc 606
|||||||||||||||||
Sbjct: 239 tacatgtgtgcacatgc 255
>gb|DT486577.1|DT486577 WS02531.B21_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02531_F24 3', mRNA sequence
Length = 941
Score = 34.2 bits (17), Expect = 7.0
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 487 aaagaaccaccacaccaagttcttt 511
|||||||| | ||||||||||||||
Sbjct: 346 aaagaacctcaacaccaagttcttt 370
>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence
Length = 51685
Score = 34.2 bits (17), Expect = 7.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 129 tttcacatggtcatcca 145
|||||||||||||||||
Sbjct: 11545 tttcacatggtcatcca 11529
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,671
Number of Sequences: 369679
Number of extensions: 93671
Number of successful extensions: 25294
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25250
Number of HSP's gapped (non-prelim): 44
length of query: 715
length of database: 203,408,664
effective HSP length: 19
effective length of query: 696
effective length of database: 196,384,763
effective search space: 136683795048
effective search space used: 136683795048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)