BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.654
(682 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU816181.1|BU816181 N061E12 Populus bark cDNA library Po... 62 3e-008
gb|BU822045.1|BU822045 UB32BPA06 Populus tremula cambium cD... 62 3e-008
gb|BU822203.1|BU822203 UB33BPG06 Populus tremula cambium cD... 62 3e-008
gb|BU835574.1|BU835574 T075F08 Populus apical shoot cDNA li... 62 3e-008
gb|BU871239.1|BU871239 Q028D05 Populus flower cDNA library ... 62 3e-008
gb|BU871600.1|BU871600 Q032D02 Populus flower cDNA library ... 62 3e-008
gb|BU872684.1|BU872684 Q045G01 Populus flower cDNA library ... 62 3e-008
gb|CK092316.1|CK092316 G078P47.3pR Populus tension wood cDN... 62 3e-008
gb|CK102452.1|CK102452 G078P47.5pR Populus tension wood cDN... 62 3e-008
gb|CX658378.1|CX658378 PO01034D09 Poplar SC cDNA library Po... 62 3e-008
gb|CX658830.1|CX658830 PO01022H02 Poplar SC cDNA library Po... 62 3e-008
gb|BU886128.1|BU886128 R040H02 Populus root cDNA library Po... 56 2e-006
gb|BU825197.1|BU825197 UK104TH10 Populus apical shoot cDNA ... 54 7e-006
gb|CA821209.1|CA821209 RA01A08 three-week-old roots incubat... 54 7e-006
gb|CF233707.1|CF233707 PtaJXO0026G11G1113 Poplar cDNA libra... 54 7e-006
gb|CF236008.1|CF236008 PtaJXT0029E8E0810 Poplar cDNA librar... 54 7e-006
gb|CX655182.1|CX655182 PO02031B04 Poplar SC cDNA library Po... 54 7e-006
gb|CX657239.1|CX657239 PO02036C03 Poplar SC cDNA library Po... 54 7e-006
gb|CA823071.1|CA823071 R20C09 two-month-old roots from clon... 52 3e-005
gb|CF228293.1|CF228293 PtaXM0011C4C0406 Poplar cDNA library... 52 3e-005
gb|CF235944.1|CF235944 PtaJXT0028H10H1016 Poplar cDNA libra... 52 3e-005
gb|CN520878.1|CN520878 GQ0108.B3_N09 GQ010 Populus trichoca... 52 3e-005
gb|AJ774105.1|AJ774105 AJ774105 Populus euphratica shoot 3-... 52 3e-005
gb|CV240173.1|CV240173 WS0234.B21_K04 PT-MB-A-13 Populus tr... 52 3e-005
gb|CV244041.1|CV244041 WS0253.B21_I24 PT-MB-N-A-15 Populus ... 52 3e-005
gb|CV259315.1|CV259315 WS02011.B21_A13 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|CV261644.1|CV261644 WS02017.B21_F18 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|CV278791.1|CV278791 WS0147.B21_G21 PTxD-IL-A-5 Populus t... 52 3e-005
gb|CX175423.1|CX175423 B07_69-74_03.ab1 leaf inoculated wit... 52 3e-005
gb|CX656589.1|CX656589 PO02019F12 Poplar SC cDNA library Po... 52 3e-005
gb|CX658546.1|CX658546 PO01036C10 Poplar SC cDNA library Po... 52 3e-005
gb|CX658927.1|CX658927 PO01024B12 Poplar SC cDNA library Po... 52 3e-005
gb|CX659374.1|CX659374 PO01029H11 Poplar SC cDNA library Po... 52 3e-005
gb|DT506707.1|DT506707 WS02416.BR_E20 PTxD-ICC-N-A-14 Popul... 52 3e-005
gb|DT509178.1|DT509178 WS02423.BR_A08 PTxD-ICC-N-A-14 Popul... 52 3e-005
gb|DT511377.1|DT511377 WS02416.B21_E20 PTxD-ICC-N-A-14 Popu... 52 3e-005
gb|DT513793.1|DT513793 WS02423.B21_A08 PTxD-ICC-N-A-14 Popu... 52 3e-005
gb|DT521689.1|DT521689 WS02034.B21_P11 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|DT524030.1|DT524030 WS02041.C21.1_F10 PTxN-IB-N-A-11 Pop... 52 3e-005
gb|DT526367.1|DT526367 WS02047.C21_N12 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|CA932481.1|CA932481 MTU5CS.P13.E08 Aspen stem cDNA Libra... 50 1e-004
gb|CX655214.1|CX655214 PO02031E04 Poplar SC cDNA library Po... 48 4e-004
gb|BU825003.1|BU825003 UK102D08 Populus apical shoot cDNA l... 46 0.002
gb|CN517300.1|CN517300 GQ0094.B3_O16 GQ009 Populus trichoca... 46 0.002
gb|AJ780094.1|AJ780094 AJ780094 Populus euphratica root 3-6... 46 0.002
gb|CV250908.1|CV250908 WS0115.B21_D12 PT-P-FL-A-2 Populus t... 46 0.002
gb|CV260670.1|CV260670 WS02014.B21_L05 PTxN-IB-N-A-11 Popul... 46 0.002
gb|DT473418.1|DT473418 WS01229.BR_J12 PT-GT-FL-A-3 Populus ... 46 0.002
gb|DT476438.1|DT476438 WS01229.B21_J12 PT-GT-FL-A-3 Populus... 46 0.002
gb|DT498389.1|DT498389 WS0115.BR_D12 PT-P-FL-A-2 Populus tr... 46 0.002
gb|BI131261.1|BI131261 G117P90Y Populus cambium cDNA librar... 44 0.007
gb|CF228312.1|CF228312 PtaXM0011E3E0309 Poplar cDNA library... 44 0.007
gb|CF232263.1|CF232263 PtaJXO0008C5C0505 Poplar cDNA librar... 44 0.007
gb|CF233927.1|CF233927 PtaJXO0029C5C0505 Poplar cDNA librar... 44 0.007
gb|CF234138.1|CF234138 PtaJXO3A10A1002 Poplar cDNA library ... 44 0.007
gb|CK092676.1|CK092676 G091P25.3pR Populus tension wood cDN... 44 0.007
gb|CN521494.1|CN521494 GQ0112.B3_H06 GQ011 Populus trichoca... 44 0.007
gb|CX660108.1|CX660108 PO01018B05 Poplar SC cDNA library Po... 44 0.007
gb|DT502131.1|DT502131 WS01315.BR_L15 PTxD-IL-FL-A-4 Populu... 44 0.007
gb|DT505019.1|DT505019 WS01315.B21_L15 PTxD-IL-FL-A-4 Popul... 44 0.007
gb|AJ779880.1|AJ779880 AJ779880 Populus euphratica root 3-6... 42 0.027
gb|CV262995.1|CV262995 WS02020.B21_B02 PTxN-IB-N-A-11 Popul... 42 0.027
gb|CV266505.1|CV266505 WS0203.B21_D12 PTxN-IB-N-A-11 Populu... 42 0.027
gb|BP924869.1|BP924869 BP924869 full-length enriched poplar... 42 0.027
gb|BP925217.1|BP925217 BP925217 full-length enriched poplar... 42 0.027
gb|DT474371.1|DT474371 WS01231.BR_L07 PT-GT-FL-A-3 Populus ... 42 0.027
gb|DT477026.1|DT477026 WS01231.B21_L07 PT-GT-FL-A-3 Populus... 42 0.027
gb|DT480596.1|DT480596 WS02529.BR_F22 PT-MB-N-A-15 Populus ... 42 0.027
gb|DT485860.1|DT485860 WS02529.B21_F22 PT-MB-N-A-15 Populus... 42 0.027
gb|DT518156.1|DT518156 WS02436.B21_F17 PTxD-ICC-N-A-14 Popu... 42 0.027
gb|BU874977.1|BU874977 V001A06 Populus flower cDNA library ... 40 0.11
gb|BU880526.1|BU880526 UM51TC07 Populus flower cDNA library... 40 0.11
gb|BU881733.1|BU881733 UM66TG08 Populus flower cDNA library... 40 0.11
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.11
gb|CA927255.1|CA927255 MTU6CR.P6.H01 Aspen root cDNA Librar... 40 0.11
gb|CA932957.1|CA932957 MTU5CS.P1.F07 Aspen stem cDNA Librar... 40 0.11
gb|CA933263.1|CA933263 MTU5CS.P5.G03 Aspen stem cDNA Librar... 40 0.11
gb|CA933336.1|CA933336 MTU5CS.P6.F05 Aspen stem cDNA Librar... 40 0.11
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.11
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.11
gb|CN519368.1|CN519368 GQ0101.B3_L08 GQ010 Populus trichoca... 40 0.11
gb|CV228675.1|CV228675 WS01910.B21_O03 PT-DX-N-A-10 Populus... 40 0.11
gb|CV253390.1|CV253390 WS0221.B21_M16 PTxD-ICC-A-12 Populus... 40 0.11
gb|CV281668.1|CV281668 WS0182.B21_I16 PTxD-IL-N-A-9 Populus... 40 0.11
gb|CX174898.1|CX174898 D01_69-99_07.ab1 leaf inoculated wit... 40 0.11
gb|DN486508.1|DN486508 P035C10.3pR Populus petioles cDNA li... 40 0.11
gb|DN496077.1|DN496077 P035C10.5pR Populus petioles cDNA li... 40 0.11
gb|DT508205.1|DT508205 WS02420.BR_F13 PTxD-ICC-N-A-14 Popul... 40 0.11
gb|DT512822.1|DT512822 WS02420.B21_F13 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|DT517648.1|DT517648 WS02434.B21_O13 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|DT519890.1|DT519890 WS02443.B21_P13 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|BU812922.1|BU812922 N003A07 Populus bark cDNA library Po... 38 0.42
gb|BU870977.1|BU870977 Q025E05 Populus flower cDNA library ... 38 0.42
gb|BU875217.1|BU875217 V003F09 Populus flower cDNA library ... 38 0.42
gb|BU880858.1|BU880858 UM55TG09 Populus flower cDNA library... 38 0.42
gb|BU886239.1|BU886239 R042F01 Populus root cDNA library Po... 38 0.42
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.42
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.42
gb|CA926802.1|CA926802 MTU6CR.P1.C12 Aspen root cDNA Librar... 38 0.42
gb|CA823102.1|CA823102 R20H03 two-month-old roots from clon... 38 0.42
gb|CA826357.1|CA826357 R76H11 two-month-old roots from clon... 38 0.42
gb|CB239809.1|CB239809 RSH17A05 two-month-old roots from cl... 38 0.42
gb|CF236344.1|CF236344 PtaJXT11F8F0812 Poplar cDNA library ... 38 0.42
gb|CK088536.1|CK088536 A058P09.3pR Hybrid aspen plasmid lib... 38 0.42
gb|CK097335.1|CK097335 UB47DPF12.3pR Populus active cambium... 38 0.42
gb|CN523576.1|CN523576 GQ015M02.T3_G08 GQ015 Populus tricho... 38 0.42
gb|CN524218.1|CN524218 GQ015M12.T3_C02 GQ015 Populus tricho... 38 0.42
gb|AJ769626.1|AJ769626 AJ769626 Populus euphratica leaf 3-6... 38 0.42
gb|AJ772993.1|AJ772993 AJ772993 Populus euphratica leaf 3-6... 38 0.42
gb|AJ774662.1|AJ774662 AJ774662 Populus euphratica shoot 3-... 38 0.42
gb|CV226497.1|CV226497 WS0164.B21_H02 PT-DX-A-7 Populus tri... 38 0.42
gb|CV227623.1|CV227623 WS0167.B21_L16 PT-DX-A-7 Populus tri... 38 0.42
gb|CV227644.1|CV227644 WS0167.B21_M17 PT-DX-A-7 Populus tri... 38 0.42
gb|CV230678.1|CV230678 WS0192.B21_E20 PT-DX-N-A-10 Populus ... 38 0.42
gb|CV231739.1|CV231739 WS0195.B21_G23 PT-DX-N-A-10 Populus ... 38 0.42
gb|CV232959.1|CV232959 WS0199.B21_D09 PT-DX-N-A-10 Populus ... 38 0.42
gb|CV234903.1|CV234903 WS01216.B21_N12 PT-GT-FL-A-3 Populus... 38 0.42
gb|CV236229.1|CV236229 WS01223.B21_F14 PT-GT-FL-A-3 Populus... 38 0.42
gb|CV247241.1|CV247241 WS01117.B21_I03 PT-P-FL-A-2 Populus ... 38 0.42
gb|CV250783.1|CV250783 WS0114.B21_L21 PT-P-FL-A-2 Populus t... 38 0.42
gb|CV251728.1|CV251728 WS0118.B21.1_G03 PT-P-FL-A-2 Populus... 38 0.42
gb|CV256391.1|CV256391 WS0243.B21_L13 PTxD-ICC-N-A-14 Popul... 38 0.42
gb|CV259426.1|CV259426 WS02011.B21_F07 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV259790.1|CV259790 WS02012.B21_E15 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV262205.1|CV262205 WS02018.B21_O19 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV263261.1|CV263261 WS02020.B21_M19 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV265082.1|CV265082 WS02026.B21_E11 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV265512.1|CV265512 WS02027.B21_H09 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV266392.1|CV266392 WS02029.B21_O09 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV267393.1|CV267393 WS02031.B21_K01 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV268795.1|CV268795 WS0206.B21_H14 PTxN-IB-N-A-11 Populu... 38 0.42
gb|CV275540.1|CV275540 WS0176.B21_M18 PTxD-NR-A-8 Populus t... 38 0.42
gb|CX172913.1|CX172913 H06_69-53_16.ab1 leaf inoculated wit... 38 0.42
gb|CX656515.1|CX656515 PO02056D09 Poplar SC cDNA library Po... 38 0.42
gb|DN487430.1|DN487430 Q025E05.3pR Populus dormant bud cDNA... 38 0.42
gb|DN497048.1|DN497048 Q025E05.5pR Populus dormant bud cDNA... 38 0.42
gb|DT469581.1|DT469581 WS01918.C21_D16 PT-DX-N-A-10 Populus... 38 0.42
gb|DT484768.1|DT484768 WS02526.B21_F21 PT-MB-N-A-15 Populus... 38 0.42
gb|DT485302.1|DT485302 WS02527.B21_N11 PT-MB-N-A-15 Populus... 38 0.42
gb|DT490907.1|DT490907 WS02546.C21.1_E13 PT-MB-N-A-15 Popul... 38 0.42
gb|DT494129.1|DT494129 WS01117.BR_I03 PT-P-FL-A-2 Populus t... 38 0.42
gb|DT496942.1|DT496942 WS01125.BR_A09 PT-P-FL-A-2 Populus t... 38 0.42
gb|DT498227.1|DT498227 WS0114.BR_L21 PT-P-FL-A-2 Populus tr... 38 0.42
gb|DT499465.1|DT499465 WS0118.BR_G03 PT-P-FL-A-2 Populus tr... 38 0.42
gb|DT509345.1|DT509345 WS02423.BR_H15 PTxD-ICC-N-A-14 Popul... 38 0.42
gb|DT513958.1|DT513958 WS02423.B21_H15 PTxD-ICC-N-A-14 Popu... 38 0.42
gb|DT519280.1|DT519280 WS02440.B21_P08 PTxD-ICC-N-A-14 Popu... 38 0.42
gb|DT521244.1|DT521244 WS02033.B21_M10 PTxN-IB-N-A-11 Popul... 38 0.42
gb|DT524186.1|DT524186 WS02041.C21.1_N12 PTxN-IB-N-A-11 Pop... 38 0.42
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 38 0.42
>gb|BU816181.1|BU816181 N061E12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 679
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 429 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 371
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 276 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 217
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 216 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 170
>gb|BU822045.1|BU822045 UB32BPA06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 525
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 266 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 208
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 113 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 54
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 53 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 7
>gb|BU822203.1|BU822203 UB33BPG06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 474
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 421 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 363
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || |||||||||| || |||||
Sbjct: 268 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacagcaaaacctcatct 209
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| || |||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 208 ccaccggggtggtcttccatgaactttgtcacatcataaaccttgcc 162
>gb|BU835574.1|BU835574 T075F08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 654
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 382 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 324
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 229 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 170
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 169 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 123
>gb|BU871239.1|BU871239 Q028D05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 654
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 396 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 338
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || |||||||||| || |||||
Sbjct: 244 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacagcaaaacctcatct 185
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| || |||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 184 ccaccggggtggtcttccatgaactttgtcacatcataaaccttgcc 138
>gb|BU871600.1|BU871600 Q032D02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 704
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 432 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 374
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || |||||||||| || |||||
Sbjct: 279 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacagcaaaacctcatct 220
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| || |||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 219 ccaccggggtggtcttccatgaactttgtcacatcataaaccttgcc 173
>gb|BU872684.1|BU872684 Q045G01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 531
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 425 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 367
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 272 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 213
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 212 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 166
>gb|CK092316.1|CK092316 G078P47.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G078P47 3', mRNA sequence
Length = 711
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 307 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 365
Score = 38.2 bits (19), Expect = 0.42
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 449 cccacatcttcgaaatcatcggtagcatcct 479
||||||||||| |||||||| || |||||||
Sbjct: 460 cccacatcttcaaaatcatcagttgcatcct 490
>gb|CK102452.1|CK102452 G078P47.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G078P47 5', mRNA sequence
Length = 534
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 517 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 459
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 364 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 305
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 304 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 258
>gb|CX658378.1|CX658378 PO01034D09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034D09 5', mRNA sequence
Length = 593
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 393 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 335
Score = 38.2 bits (19), Expect = 0.42
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatcct 479
||||||||||| |||||||| || |||||||
Sbjct: 240 cccacatcttcaaaatcatcagttgcatcct 210
>gb|CX658830.1|CX658830 PO01022H02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01022H02 5', mRNA sequence
Length = 592
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 236 aactggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 178
Score = 38.2 bits (19), Expect = 0.42
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatcct 479
||||||||||| |||||||| || |||||||
Sbjct: 83 cccacatcttcaaaatcatcagttgcatcct 53
>gb|BU886128.1|BU886128 R040H02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 369
Score = 56.0 bits (28), Expect = 2e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 299 tggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
|||||||||||||| | |||||| | ||||||||| || |||||||| ||||||||
Sbjct: 347 tggaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgctt 292
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 196 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 137
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 136 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 90
>gb|BU825197.1|BU825197 UK104TH10 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 621
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | | |||| | ||||||||| || |||||||| ||||||||
Sbjct: 417 aactggaggatcttgataatgcactcggaggtcttatcttgattgtagtgaggctgctt 359
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 264 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 205
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 204 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 158
>gb|CA821209.1|CA821209 RA01A08 three-week-old roots incubated in 5uM indole-3-acetic acid
24h before harvesting Populus alba x Populus tremula
cDNA 5', mRNA sequence
Length = 572
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||| ||| ||||||||
Sbjct: 440 aactggaggatcttgataatgaactcggaggtcttatcttgattgtggtgaggctgctt 382
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 287 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 228
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 227 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 181
>gb|CF233707.1|CF233707 PtaJXO0026G11G1113 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 564
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||| ||| ||||||||
Sbjct: 423 aactggaggatcttgataatgaactcggaggtcttatcttgattgtggtgaggctgctt 365
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 270 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 211
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 210 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 164
>gb|CF236008.1|CF236008 PtaJXT0029E8E0810 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 560
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||| ||| ||||||||
Sbjct: 281 aactggaggatcttgataatgaactcggaggtcttatcttgattgtggtgaggctgctt 223
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 128 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 69
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 68 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 22
>gb|CX655182.1|CX655182 PO02031B04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02031B04 5', mRNA sequence
Length = 552
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||| ||| ||||||||
Sbjct: 293 aactggaggatcttgataatgaactcggaggtcttatcttgattgtggtgaggctgctt 235
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 140 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatcc 81
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 80 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 34
>gb|CX657239.1|CX657239 PO02036C03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02036C03 5', mRNA sequence
Length = 604
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgctt 354
||||||||||||||||| | |||||| | ||||||||| || |||| ||| ||||||||
Sbjct: 411 aactggaggatcttgataatgaactcggaggtcttatcttgattgtggtgaggctgctt 353
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 258 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatcc 199
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 198 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 152
>gb|CA823071.1|CA823071 R20C09 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 598
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 473 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 416
>gb|CF228293.1|CF228293 PtaXM0011C4C0406 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 684
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 353 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 296
>gb|CF235944.1|CF235944 PtaJXT0028H10H1016 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 696
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 475 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 418
>gb|CN520878.1|CN520878 GQ0108.B3_N09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_N09 5', mRNA sequence
Length = 782
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 423 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 366
>gb|AJ774105.1|AJ774105 AJ774105 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300008F10F1, mRNA sequence
Length = 572
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 457 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 400
>gb|CV240173.1|CV240173 WS0234.B21_K04 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_K04
3', mRNA sequence
Length = 726
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 352 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 409
>gb|CV244041.1|CV244041 WS0253.B21_I24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0253_I24 3', mRNA sequence
Length = 856
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 399 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 456
>gb|CV259315.1|CV259315 WS02011.B21_A13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_A13 3', mRNA sequence
Length = 760
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 340 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 397
>gb|CV261644.1|CV261644 WS02017.B21_F18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_F18 3', mRNA sequence
Length = 761
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 330 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 387
>gb|CV278791.1|CV278791 WS0147.B21_G21 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0147_G21 3', mRNA sequence
Length = 700
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 350 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 407
>gb|CX175423.1|CX175423 B07_69-74_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 667
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 606 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 549
>gb|CX656589.1|CX656589 PO02019F12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02019F12 5', mRNA sequence
Length = 586
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 332 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 389
>gb|CX658546.1|CX658546 PO01036C10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01036C10 5', mRNA sequence
Length = 755
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 422 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 365
>gb|CX658927.1|CX658927 PO01024B12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01024B12 5', mRNA sequence
Length = 736
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 336 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 393
>gb|CX659374.1|CX659374 PO01029H11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01029H11 5', mRNA sequence
Length = 747
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 422 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 365
>gb|DT506707.1|DT506707 WS02416.BR_E20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_E20 5', mRNA sequence
Length = 784
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 362 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 419
>gb|DT509178.1|DT509178 WS02423.BR_A08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_A08 5', mRNA sequence
Length = 824
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 447 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 390
>gb|DT511377.1|DT511377 WS02416.B21_E20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_E20 3', mRNA sequence
Length = 784
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 423 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 366
>gb|DT513793.1|DT513793 WS02423.B21_A08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_A08 3', mRNA sequence
Length = 824
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 378 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 435
>gb|DT521689.1|DT521689 WS02034.B21_P11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_P11 3', mRNA sequence
Length = 780
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 361 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 418
>gb|DT524030.1|DT524030 WS02041.C21.1_F10 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02041_F10 3', mRNA sequence
Length = 891
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 393 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 450
>gb|DT526367.1|DT526367 WS02047.C21_N12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02047_N12 3', mRNA sequence
Length = 742
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgct 353
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||||
Sbjct: 335 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctgct 392
>gb|CA932481.1|CA932481 MTU5CS.P13.E08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 194
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcgg 348
||||| |||| |||||||| |||||| || ||||| || ||||||||||||||
Sbjct: 127 aactgcaggaccttgatgatgaactctggtgtcttgtcttggttgtagtgcgg 179
>gb|CX655214.1|CX655214 PO02031E04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02031E04 5', mRNA sequence
Length = 670
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctg 351
||||| ||||||||||| | |||||| | ||||||||| || |||||||| |||||
Sbjct: 332 aactgaaggatcttgataatgaactcggaggtcttatcttgattgtagtgaggctg 387
>gb|BU825003.1|BU825003 UK102D08 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 439
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
|||||||||||| ||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 360 cccacatcttcggaatcatcagttgcatcctgccctgtagaagacaacaatacctcatct 301
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 300 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 254
>gb|CN517300.1|CN517300 GQ0094.B3_O16 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_O16 5', mRNA sequence
Length = 508
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 249 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 190
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 189 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 143
>gb|AJ780094.1|AJ780094 AJ780094 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800011G01F1, mRNA sequence
Length = 640
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 213 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 154
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 153 ccaccagggtggtcttccatgaacttcgtcacatcataaaccttgcc 107
>gb|CV250908.1|CV250908 WS0115.B21_D12 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0115_D12 3', mRNA sequence
Length = 720
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Plus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 427 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 486
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 487 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 533
>gb|CV260670.1|CV260670 WS02014.B21_L05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_L05 3', mRNA sequence
Length = 675
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Plus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 429 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 488
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 489 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 535
>gb|DT473418.1|DT473418 WS01229.BR_J12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_J12 5', mRNA sequence
Length = 719
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 270 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 211
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 210 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 164
>gb|DT476438.1|DT476438 WS01229.B21_J12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_J12 3', mRNA sequence
Length = 705
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Plus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 450 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 509
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 510 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 556
>gb|DT498389.1|DT498389 WS0115.BR_D12 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_D12
5', mRNA sequence
Length = 680
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 449 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcaggacatcatca 508
||||||||||| |||||||| || ||||||| | || ||||||| || || |||||
Sbjct: 262 cccacatcttcaaaatcatcagttgcatcctgccctgtagaagacaacaaaacctcatct 203
Query: 509 cctccagggtggtcctccagaaacttggtcacattgtacaccttgcc 555
|| ||||||||||| |||| ||||| ||||||| || ||||||||
Sbjct: 202 ccaccagggtggtcttccatgaactttgtcacatcataaaccttgcc 156
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,780
Number of Sequences: 369679
Number of extensions: 82780
Number of successful extensions: 25211
Number of sequences better than 0.5: 150
Number of HSP's better than 0.5 without gapping: 143
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 24845
Number of HSP's gapped (non-prelim): 339
length of query: 682
length of database: 203,408,664
effective HSP length: 19
effective length of query: 663
effective length of database: 196,384,763
effective search space: 130203097869
effective search space used: 130203097869
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)