BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK319271.1|CK319271 X9P08g10 Populus stem seasonal libra... 125 4e-027
gb|CX171345.1|CX171345 G05_69-58_13.ab1 leaf inoculated wit... 121 7e-026
gb|DT477707.1|DT477707 WS02520.BR_L23 PT-MB-N-A-15 Populus ... 117 1e-024
gb|DT477970.1|DT477970 WS02521.BR_H22 PT-MB-N-A-15 Populus ... 117 1e-024
gb|DT517942.1|DT517942 WS02435.B21_L24 PTxD-ICC-N-A-14 Popu... 117 1e-024
gb|CK318149.1|CK318149 B9P06a02 Populus stem seasonal libra... 113 2e-023
gb|DT482773.1|DT482773 WS02520.B21_L23 PT-MB-N-A-15 Populus... 113 2e-023
gb|DT483042.1|DT483042 WS02521.B21_H22 PT-MB-N-A-15 Populus... 113 2e-023
gb|DT515130.1|DT515130 WS02426.B21_L16 PTxD-ICC-N-A-14 Popu... 113 2e-023
gb|BU882016.1|BU882016 UM70TE07 Populus flower cDNA library... 105 4e-021
gb|DT520636.1|DT520636 WS02448.B21_B21 PTxD-ICC-N-A-14 Popu... 105 4e-021
gb|BU886995.1|BU886995 R053C02 Populus root cDNA library Po... 103 2e-020
gb|DT521443.1|DT521443 WS02034.B21_E21 PTxN-IB-N-A-11 Popul... 103 2e-020
gb|CV240046.1|CV240046 WS0234.B21_D21 PT-MB-A-13 Populus tr... 98 1e-018
gb|CV248198.1|CV248198 WS0112.B21_M13 PT-P-FL-A-2 Populus t... 98 1e-018
gb|CV265311.1|CV265311 WS02026.B21_O13 PTxN-IB-N-A-11 Popul... 98 1e-018
gb|CF228341.1|CF228341 PtaXM0011H11H1115 Poplar cDNA librar... 96 4e-018
gb|CK097522.1|CK097522 UB53CPD10.3pR Populus active cambium... 96 4e-018
gb|CX178181.1|CX178181 C05_45-71_05.ab1 leaf inoculated wit... 96 4e-018
gb|CX176286.1|CX176286 H12_69-75_16.ab1 leaf inoculated wit... 86 4e-015
gb|DT520714.1|DT520714 WS02448.B21_F10 PTxD-ICC-N-A-14 Popu... 86 4e-015
gb|CK087304.1|CK087304 A002P49.3pR Hybrid aspen plasmid lib... 84 2e-014
gb|CK098046.1|CK098046 A002P49.5pR Hybrid aspen plasmid lib... 84 2e-014
gb|AI161556.1|AI161556 A002P49U Hybrid aspen plasmid librar... 70 2e-010
gb|BI129672.1|BI129672 G094P17Y Populus cambium cDNA librar... 56 3e-006
gb|BU823520.1|BU823520 UB53CPD10 Populus tremula cambium cD... 54 1e-005
gb|CA927708.1|CA927708 MTU6TR.P12.A10 Aspen root cDNA Libra... 54 1e-005
gb|CA928923.1|CA928923 MTU6TR.P8.D10 Aspen root cDNA Librar... 54 1e-005
gb|CK107320.1|CK107320 UB53CPD10.5pR Populus active cambium... 54 1e-005
gb|CF234107.1|CF234107 PtaJXO2F2F0212 Poplar cDNA library f... 48 8e-004
gb|AJ770253.1|AJ770253 AJ770253 Populus euphratica leaf 3-6... 48 8e-004
gb|CV239059.1|CV239059 WS0231.B21_D05 PT-MB-A-13 Populus tr... 48 8e-004
gb|CX185938.1|CX185938 A04_45-95_02.ab1 leaf inoculated wit... 48 8e-004
gb|BP924145.1|BP924145 BP924145 full-length enriched poplar... 48 8e-004
gb|DT509624.1|DT509624 WS02424.BR_E01 PTxD-ICC-N-A-14 Popul... 48 8e-004
gb|DT520134.1|DT520134 WS02446.B21.1_K22 PTxD-ICC-N-A-14 Po... 48 8e-004
gb|CA932212.1|CA932212 MTU5CS.P10.A10 Aspen stem cDNA Libra... 46 0.003
gb|CA932236.1|CA932236 MTU5CS.P10.D08 Aspen stem cDNA Libra... 46 0.003
gb|CA932392.1|CA932392 MTU5CS.P12.D04 Aspen stem cDNA Libra... 46 0.003
gb|CA932870.1|CA932870 MTU5CS.P18.E07 Aspen stem cDNA Libra... 46 0.003
gb|CV242652.1|CV242652 WS02515.B21_K14 PT-MB-N-A-15 Populus... 46 0.003
gb|CV259447.1|CV259447 WS02011.B21_G05 PTxN-IB-N-A-11 Popul... 46 0.003
gb|CX170045.1|CX170045 G01_69-106_13.ab1 leaf inoculated wi... 46 0.003
gb|CX179219.1|CX179219 A03_45-73_01.ab1 leaf inoculated wit... 46 0.003
gb|CX179431.1|CX179431 F05_45-20_11.ab1 leaf inoculated wit... 46 0.003
gb|CX179975.1|CX179975 G01_45-56_13.ab1 leaf inoculated wit... 46 0.003
gb|CX185452.1|CX185452 B04_45-58_04.ab1 leaf inoculated wit... 46 0.003
gb|DT483652.1|DT483652 WS02523.B21_D04 PT-MB-N-A-15 Populus... 46 0.003
gb|DT495226.1|DT495226 WS0112.BR_M13 PT-P-FL-A-2 Populus tr... 46 0.003
gb|DT510501.1|DT510501 WS02426.BR_L16 PTxD-ICC-N-A-14 Popul... 46 0.003
gb|BU873282.1|BU873282 Q053D02 Populus flower cDNA library ... 44 0.013
gb|BP931843.1|BP931843 BP931843 full-length enriched poplar... 42 0.051
gb|DT514230.1|DT514230 WS02424.B21_E01 PTxD-ICC-N-A-14 Popu... 42 0.051
>gb|CK319271.1|CK319271 X9P08g10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 717
Score = 125 bits (63), Expect = 4e-027
Identities = 257/319 (80%), Gaps = 2/319 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 609 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 550
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| |||||||
Sbjct: 549 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacataag 491
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 490 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 431
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | ||||| |||
Sbjct: 430 cagaccattcatatatctcaacagaaaaatccagatcatctttgatcctatacattgctg 371
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| |||| || |||||| | |||||||| ||| ||| |||||||| || || || ||
Sbjct: 370 gctcatctgtttccccagctttgtggtgtctaagattcacagccttcagatgacctctta 311
Query: 745 catggaagacccatttgct 763
|||||||||||||||||||
Sbjct: 310 catggaagacccatttgct 292
>gb|CX171345.1|CX171345 G05_69-58_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 655
Score = 121 bits (61), Expect = 7e-026
Identities = 255/317 (80%), Gaps = 2/317 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 545 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 486
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| ||||||| || | ||||||| |||||||
Sbjct: 485 cttgaatgatgtatga-tacaagcccttcttgtcatctgatagggttttcaacacataag 427
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 426 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 367
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | ||||| |||
Sbjct: 366 cagaccattcatatatctcaacagaaaaatccagatcatctttgatcctatacattgctg 307
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| |||| || |||||| |||||||||| ||| ||| |||||||| || || || ||
Sbjct: 306 gctcatctgtttccccagccttgtggtgtctaagattcacagccttcagatgacctctta 247
Query: 745 catggaagacccatttg 761
|||||||||||||||||
Sbjct: 246 catggaagacccatttg 230
>gb|DT477707.1|DT477707 WS02520.BR_L23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_L23 5', mRNA sequence
Length = 869
Score = 117 bits (59), Expect = 1e-024
Identities = 256/319 (80%), Gaps = 2/319 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 435 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 376
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| |||||||
Sbjct: 375 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacataag 317
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 316 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 257
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | ||||| |||
Sbjct: 256 cagaccattcatatatctcaacagaaaaatccagatcatctttgatcctatacattgctg 197
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| |||| || |||||| | |||| ||| ||| ||| |||||||| || || || ||
Sbjct: 196 gctcatctgtttccccagctttgttgtgtctaagattcacagccttcagatgacctctta 137
Query: 745 catggaagacccatttgct 763
|||||||||||||||||||
Sbjct: 136 catggaagacccatttgct 118
>gb|DT477970.1|DT477970 WS02521.BR_H22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_H22 5', mRNA sequence
Length = 694
Score = 117 bits (59), Expect = 1e-024
Identities = 256/319 (80%), Gaps = 2/319 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 665 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 606
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| |||||||
Sbjct: 605 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacataag 547
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 546 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 487
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | ||||| |||
Sbjct: 486 cagaccattcatatatctcaacagaaaaatccagatcatctttgatcctatacattgctg 427
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| |||| || |||||| | |||| ||| ||| ||| |||||||| || || || ||
Sbjct: 426 gctcatctgtttccccagctttgttgtgtctaagattcacagccttcagatgacctctta 367
Query: 745 catggaagacccatttgct 763
|||||||||||||||||||
Sbjct: 366 catggaagacccatttgct 348
>gb|DT517942.1|DT517942 WS02435.B21_L24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_L24 3', mRNA sequence
Length = 905
Score = 117 bits (59), Expect = 1e-024
Identities = 256/319 (80%), Gaps = 2/319 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 544 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 603
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| |||||||
Sbjct: 604 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacataag 662
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 663 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 722
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | ||||| |||
Sbjct: 723 cagaccattcatatatctcaacagaaaaatccagatcatctttgatcctatacattgctg 782
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| |||| || |||||| | |||| ||| ||| ||| |||||||| || || || ||
Sbjct: 783 gctcatctgtttccccagctttgttgtgtctaagattcacagccttcagatgacctctta 842
Query: 745 catggaagacccatttgct 763
|||||||||||||||||||
Sbjct: 843 catggaagacccatttgct 861
>gb|CK318149.1|CK318149 B9P06a02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 698
Score = 113 bits (57), Expect = 2e-023
Identities = 170/205 (82%), Gaps = 2/205 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 256 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 197
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| |||||||
Sbjct: 196 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacataag 138
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 137 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 78
Query: 625 cagaccattcatagatctcaacaga 649
||||||||||||| |||||||||||
Sbjct: 77 cagaccattcatatatctcaacaga 53
>gb|DT482773.1|DT482773 WS02520.B21_L23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_L23 3', mRNA sequence
Length = 849
Score = 113 bits (57), Expect = 2e-023
Identities = 170/205 (82%), Gaps = 2/205 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 586 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 645
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| |||||||
Sbjct: 646 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacataag 704
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 705 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 764
Query: 625 cagaccattcatagatctcaacaga 649
||||||||||||| |||||||||||
Sbjct: 765 cagaccattcatatatctcaacaga 789
>gb|DT483042.1|DT483042 WS02521.B21_H22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_H22 3', mRNA sequence
Length = 831
Score = 113 bits (57), Expect = 2e-023
Identities = 170/205 (82%), Gaps = 2/205 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 547 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 606
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| |||||||
Sbjct: 607 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacataag 665
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 666 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 725
Query: 625 cagaccattcatagatctcaacaga 649
||||||||||||| |||||||||||
Sbjct: 726 cagaccattcatatatctcaacaga 750
>gb|DT515130.1|DT515130 WS02426.B21_L16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_L16 3', mRNA sequence
Length = 875
Score = 113 bits (57), Expect = 2e-023
Identities = 170/205 (82%), Gaps = 2/205 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 579 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 638
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| |||||||
Sbjct: 639 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacataag 697
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 698 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 757
Query: 625 cagaccattcatagatctcaacaga 649
||||||||||||| |||||||||||
Sbjct: 758 cagaccattcatatatctcaacaga 782
>gb|BU882016.1|BU882016 UM70TE07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 528
Score = 105 bits (53), Expect = 4e-021
Identities = 169/205 (82%), Gaps = 2/205 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 353 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 294
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| ||||||| || | ||||||| |||||||
Sbjct: 293 cttgaatgatgtatga-tacaagcccttcttgtcatctgatagggttttcaacacataag 235
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| |||
Sbjct: 234 ggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctctttc 175
Query: 625 cagaccattcatagatctcaacaga 649
||||||||||||| |||||||||||
Sbjct: 174 cagaccattcatatatctcaacaga 150
>gb|DT520636.1|DT520636 WS02448.B21_B21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_B21 3', mRNA sequence
Length = 775
Score = 105 bits (53), Expect = 4e-021
Identities = 169/205 (82%), Gaps = 2/205 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 474 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 533
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| ||||| |
Sbjct: 534 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacatagg 592
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| ||||||||| || |||||||| || |||||||||| |||||| |||
Sbjct: 593 ggctcatcatataaaactggacctgaacatcatcggccacatatggctcccagctctttc 652
Query: 625 cagaccattcatagatctcaacaga 649
||||||||||||| |||||||||||
Sbjct: 653 cagaccattcatatatctcaacaga 677
>gb|BU886995.1|BU886995 R053C02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 641
Score = 103 bits (52), Expect = 2e-020
Identities = 276/348 (79%), Gaps = 2/348 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| ||||| |||||||| ||
Sbjct: 640 agtatatccaagcctgttatactcaaccttaaactggaaaaccccgtaaacatcaggcac 581
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | |||||||| ||||| |
Sbjct: 580 cttgaatgatgtatga-tacaagccctttttgtcatttgatagggttttcagcacatagg 522
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| | ||||||| || ||||||| || ||||| |||| |||||| |||
Sbjct: 521 ggctcatcatatagaactggacctgaacatcattggccacatagggctcccagctctttc 462
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | |||||| | |
Sbjct: 461 cagaccattcatatatctcaacagaaaaatccagatcatccttgatcctgtacattgcag 402
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| || | || |||||| | || | ||| ||| ||| |||||||| || || || || |
Sbjct: 401 gctcgtctgtttccccagctttattgtgtctaagattcacagccttcagatgacctcttt 342
Query: 745 catggaagacccatttgcttgtctctgtcacaaattgctcatttccag 792
||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct: 341 catggaagacccatttgctaagttcagtcacaaattgctcattaccag 294
>gb|DT521443.1|DT521443 WS02034.B21_E21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_E21 3', mRNA sequence
Length = 936
Score = 103 bits (52), Expect = 2e-020
Identities = 276/348 (79%), Gaps = 2/348 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 466 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 525
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| ||||| |
Sbjct: 526 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacatagg 584
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| | ||||||| || |||||||| || |||||||||| |||||| |||
Sbjct: 585 ggctcatcatatagaactggacctgaacatcatcggccacatatggctcccagctctttc 644
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | |||||| | |
Sbjct: 645 cagaccattcatatatctcaacagaaaaatccagatcatccttgatcctgtacattgcag 704
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| || | || |||||| | || | ||| ||| ||| |||||||| || || || || |
Sbjct: 705 gctcgtctgtttccccagctttattgtgtctaagattcacagccttcagatgacctcttt 764
Query: 745 catggaagacccatttgcttgtctctgtcacaaattgctcatttccag 792
||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct: 765 catggaagacccatttgctaagttcagtcacaaattgctcattaccag 812
>gb|CV240046.1|CV240046 WS0234.B21_D21 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_D21
3', mRNA sequence
Length = 702
Score = 97.6 bits (49), Expect = 1e-018
Identities = 168/205 (81%), Gaps = 2/205 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 417 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 476
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| ||||| |
Sbjct: 477 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacatagg 535
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| | ||||||| || |||||||| || |||||||||| |||||| |||
Sbjct: 536 ggctcatcatatagaactggacctgaacatcatcggccacatatggctcccagctctttc 595
Query: 625 cagaccattcatagatctcaacaga 649
||||||||||||| |||||||||||
Sbjct: 596 cagaccattcatatatctcaacaga 620
>gb|CV248198.1|CV248198 WS0112.B21_M13 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0112_M13 3', mRNA sequence
Length = 749
Score = 97.6 bits (49), Expect = 1e-018
Identities = 169/205 (82%), Gaps = 3/205 (1%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| || |||||||| || ||||||||||| || || |||||||||||
Sbjct: 546 agtatatccaagcctgtgatactcaaccttaaactggaaaaccccataaacatcaggaac 605
Query: 506 tttgaaggatgt-tgagtataaacccttgttgt-cattcgacatagttttcagaacataa 563
||||| ||||| ||| || || ||||| |||| |||| || | ||||||| ||||||
Sbjct: 606 cttgaatgatgtatga-tacaagcccttcttgtncatttgatagggttttcaacacataa 664
Query: 564 ggactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgtt 623
|| ||||||||| ||| ||||| || ||||||| || |||||||| | |||||| ||
Sbjct: 665 gggctcatcatgtaaagctggacctggacatcattggccacatatggttcccagctcttt 724
Query: 624 ccagaccattcatagatctcaacag 648
|||||||||||||| ||||||||||
Sbjct: 725 ccagaccattcatatatctcaacag 749
>gb|CV265311.1|CV265311 WS02026.B21_O13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_O13 3', mRNA sequence
Length = 750
Score = 97.6 bits (49), Expect = 1e-018
Identities = 168/205 (81%), Gaps = 2/205 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 472 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 531
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| ||||| |
Sbjct: 532 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacatagg 590
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| | ||||||| || |||||||| || |||||||||| |||||| |||
Sbjct: 591 ggctcatcatatagaactggacctgaacatcatcggccacatatggctcccagctctttc 650
Query: 625 cagaccattcatagatctcaacaga 649
||||||||||||| |||||||||||
Sbjct: 651 cagaccattcatatatctcaacaga 675
>gb|CF228341.1|CF228341 PtaXM0011H11H1115 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 640
Score = 95.6 bits (48), Expect = 4e-018
Identities = 275/348 (79%), Gaps = 2/348 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 471 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 412
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| ||||| |
Sbjct: 411 cttgaatgatgtatga-tacaagccctttttgtcatttgatagggttttcaacacatagg 353
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| | ||||||| || ||||||| || |||||||||| |||||| |||
Sbjct: 352 ggctcatcatatagaactggacctgaacatcattggccacatatggctcccagctctttc 293
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | |||||| | |
Sbjct: 292 cagaccattcatatatctcaacagaaaaatccagatcatccttgatcctgtacattgcag 233
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| || | || |||||| | || | ||| ||| ||| |||||||| || || || || |
Sbjct: 232 gctcgtctgtttccccagctttattgtgtctaagattcacagccttcagatgacctcttt 173
Query: 745 catggaagacccatttgcttgtctctgtcacaaattgctcatttccag 792
||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct: 172 catggaagacccatttgctaagttcagtcacaaattgctcattaccag 125
>gb|CK097522.1|CK097522 UB53CPD10.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB53CPD10 3', mRNA sequence
Length = 699
Score = 95.6 bits (48), Expect = 4e-018
Identities = 275/348 (79%), Gaps = 2/348 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 307 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 366
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| ||||| |
Sbjct: 367 cttgaatgatgtatga-tacaagccctttttgtcatttgatagggttttcaacacatatg 425
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| | ||||||| || ||||||| || |||||||||| |||||| |||
Sbjct: 426 ggctcatcatatagaactggacctgaacatcattggccacatatggctcccagctctttc 485
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||||||||| | ||||| ||||| || || | |||||| | |
Sbjct: 486 cagaccattcatatatctcaacagaaaaatccagatcatccttgatcctgtacattgcag 545
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| || | || |||||| | || | ||| ||| ||| |||||||| || || || || |
Sbjct: 546 gctcgtctgtttccccagctttattgtgtctaagattcacagccttcagatgacctcttt 605
Query: 745 catggaagacccatttgcttgtctctgtcacaaattgctcatttccag 792
||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct: 606 catggaagacccatttgctaagttcagtcacaaattgctcattaccag 653
>gb|CX178181.1|CX178181 C05_45-71_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 679
Score = 95.6 bits (48), Expect = 4e-018
Identities = 275/348 (79%), Gaps = 2/348 (0%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 535 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 476
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| || || ||||| |||||||| || | ||||||| ||||| |
Sbjct: 475 cttgaatgatgtatga-tacaagcccttcttgtcatttgatagggttttcaacacatagg 417
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| | ||||||| || |||||||| || |||||||||| |||||| |||
Sbjct: 416 ggctcatcatatagaactggacctgaacatcatctgccacatatggctcccagctctttc 357
Query: 625 cagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctg 684
||||||||||||| ||||| ||||| | ||||| ||||| || || | |||||| | |
Sbjct: 356 cagaccattcatatatctctacagaaaaatccagatcatccttgatcctgtacattgcag 297
Query: 685 gttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctct 744
| || | || |||||| | || | ||| ||| ||| |||||||| || || || || |
Sbjct: 296 gctcgtctgtttccccagctttattgtgtctaagattcacagccttcagatgacctcttt 237
Query: 745 catggaagacccatttgcttgtctctgtcacaaattgctcatttccag 792
||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct: 236 catggaagacccatttgctaagttcagtcacaaattgctcattaccag 189
>gb|CX176286.1|CX176286 H12_69-75_16.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 668
Score = 85.7 bits (43), Expect = 4e-015
Identities = 215/270 (79%), Gaps = 2/270 (0%)
Strand = Plus / Minus
Query: 495 acatcaggaactttgaaggatgt-tgagtataaacccttgttgtcattcgacatagtttt 553
||||||||||| ||||| ||||| ||| || || ||||| |||||||| || | |||||
Sbjct: 656 acatcaggaaccttgaatgatgtatga-tacaagcccttcttgtcatttgatagggtttt 598
Query: 554 cagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggctt 613
|| |||||||| ||||||||| | | ||||| || ||||||| || |||||||| |
Sbjct: 597 caacacataagggctcatcatgtanagctggacctggacatcattggccacatatggttc 538
Query: 614 ccagcttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatgcg 673
|||||| |||||||||||||||| ||||||||||| | ||||| ||||| || || |
Sbjct: 537 ccagctctttccagaccattcatatatctcaacagaaaaatccagatcatctttgatcct 478
Query: 674 gtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagccttaag 733
||||| |||| |||| || |||||| | |||||||| ||| ||| |||||||| ||
Sbjct: 477 atacattgctggctcatctgtttccccagctttgtggtgtctaagattcacagccttcag 418
Query: 734 gtgccccctctcatggaagacccatttgct 763
|| || || |||||||||||||||||||
Sbjct: 417 atgacctcttgcatggaagacccatttgct 388
>gb|DT520714.1|DT520714 WS02448.B21_F10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_F10 3', mRNA sequence
Length = 688
Score = 85.7 bits (43), Expect = 4e-015
Identities = 165/203 (81%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 346 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 405
Query: 506 tttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataag 564
||||| ||||| ||| | || ||||| |||||||| || | ||||||| ||||| |
Sbjct: 406 cttgaatgatgtatga-aacaagcccttcttgtcatttgatagggttttcaacacatagg 464
Query: 565 gactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttc 624
| |||||||| ||||||||| || |||||||| || |||||||||| |||||| |||
Sbjct: 465 ggctcatcatataaaactggacctgaacatcatcggccacatatggctcccagctctttc 524
Query: 625 cagaccattcatagatctcaaca 647
|| |||||||||| |||||||||
Sbjct: 525 caaaccattcatatatctcaaca 547
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 723 acagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtcacaaattgc 782
|||||||| || || || || |||||||||||||||||||| || ||||||||||||
Sbjct: 623 acagccttcagatgacctctttcatggaagacccatttgctaagttcagtcacaaattgc 682
Query: 783 tcatt 787
|||||
Sbjct: 683 tcatt 687
>gb|CK087304.1|CK087304 A002P49.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P49 3', mRNA sequence
Length = 622
Score = 83.8 bits (42), Expect = 2e-014
Identities = 152/186 (81%), Gaps = 2/186 (1%)
Strand = Plus / Plus
Query: 465 tactcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt-tgagta 523
|||||||| || ||||||||||| || || |||||||| || ||||| ||||| ||| ||
Sbjct: 386 tactcaaccttaaactggaaaaccccataaacatcaggcaccttgaatgatgtatga-ta 444
Query: 524 taaacccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactg 583
|| ||||| |||||||| || | ||||||| ||||| || |||||||| | |||||
Sbjct: 445 caagccctttttgtcatttgatagggttttcaacacataggggctcatcatatagaactg 504
Query: 584 gagttgcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctc 643
|| || ||||||| || |||||||||| |||||| |||||||||||||||| |||||
Sbjct: 505 gacctgaacatcattggccacatatggctcccagctctttccagaccattcatatatctc 564
Query: 644 aacaga 649
||||||
Sbjct: 565 aacaga 570
>gb|CK098046.1|CK098046 A002P49.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P49 5', mRNA sequence
Length = 415
Score = 83.8 bits (42), Expect = 2e-014
Identities = 152/186 (81%), Gaps = 2/186 (1%)
Strand = Plus / Minus
Query: 465 tactcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt-tgagta 523
|||||||| || ||||||||||| || || |||||||| || ||||| ||||| ||| ||
Sbjct: 308 tactcaaccttaaactggaaaaccccataaacatcaggcaccttgaatgatgtatga-ta 250
Query: 524 taaacccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactg 583
|| ||||| |||||||| || | ||||||| ||||| || |||||||| | |||||
Sbjct: 249 caagccctttttgtcatttgatagggttttcaacacataggggctcatcatatagaactg 190
Query: 584 gagttgcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctc 643
|| || ||||||| || |||||||||| |||||| |||||||||||||||| |||||
Sbjct: 189 gacctgaacatcattggccacatatggctcccagctctttccagaccattcatatatctc 130
Query: 644 aacaga 649
||||||
Sbjct: 129 aacaga 124
>gb|AI161556.1|AI161556 A002P49U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 505
Score = 69.9 bits (35), Expect = 2e-010
Identities = 152/187 (81%), Gaps = 3/187 (1%)
Strand = Plus / Minus
Query: 465 tactcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt-tgagta 523
|||||||| || ||||||||||| || || |||||||| || ||||| ||||| ||| ||
Sbjct: 305 tactcaaccttaaactggaaaaccccataaacatcaggcaccttgaatgatgtatga-ta 247
Query: 524 taaacccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactg 583
|| ||||| |||||||| || | ||||||| ||||| || |||||||| | |||||
Sbjct: 246 caagccctttttgtcatttgatagggttttcaacacataggggctcatcatatagaactg 187
Query: 584 gagttgcacatcatcagcaacata-tggcttccagcttgttccagaccattcatagatct 642
|| || ||||||| || ||||| ||||| |||||| |||||||||||||||| ||||
Sbjct: 186 gacctgaacatcattggccacataatggctcccagctctttccagaccattcatatatct 127
Query: 643 caacaga 649
|||||||
Sbjct: 126 caacaga 120
>gb|BI129672.1|BI129672 G094P17Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 304
Score = 56.0 bits (28), Expect = 3e-006
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| ||||| |||||||| ||
Sbjct: 107 agtatatccaagcctgttatactcaaccttaaactggaaaaccccgtaaacatcaggcac 48
Query: 506 tttgaaggatgt 517
||||| |||||
Sbjct: 47 cttgaatgatgt 36
>gb|BU823520.1|BU823520 UB53CPD10 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 607
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||||||||||||||||||
Sbjct: 495 tggatcctcatcaaaatcaaccccaca 469
>gb|CA927708.1|CA927708 MTU6TR.P12.A10 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 543
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||||||||||||||||||
Sbjct: 361 tggatcctcatcaaaatcaaccccaca 387
>gb|CA928923.1|CA928923 MTU6TR.P8.D10 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 543
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||||||||||||||||||
Sbjct: 361 tggatcctcatcaaaatcaaccccaca 387
>gb|CK107320.1|CK107320 UB53CPD10.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB53CPD10 5', mRNA sequence
Length = 618
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||||||||||||||||||
Sbjct: 487 tggatcctcatcaaaatcaaccccaca 461
>gb|CF234107.1|CF234107 PtaJXO2F2F0212 Poplar cDNA library from young opposite xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 576
Score = 48.1 bits (24), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 482 tggatcctcatcnaaatcaaccccaca 456
>gb|AJ770253.1|AJ770253 AJ770253 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100009D11F1, mRNA sequence
Length = 230
Score = 48.1 bits (24), Expect = 8e-004
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 88 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 29
Query: 506 tttgaaggatgt 517
||||| |||||
Sbjct: 28 cttgaatgatgt 17
>gb|CV239059.1|CV239059 WS0231.B21_D05 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_D05
3', mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1190 tggatcctcatcaaaatcaacccc 1213
||||||||||||||||||||||||
Sbjct: 123 tggatcctcatcaaaatcaacccc 146
>gb|CX185938.1|CX185938 A04_45-95_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 636
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaacccc 1213
||||||||||||||||||||||||
Sbjct: 456 tggatcctcatcaaaatcaacccc 433
>gb|BP924145.1|BP924145 BP924145 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-028_O02.f 5', mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaacccc 1213
||||||||||||||||||||||||
Sbjct: 558 tggatcctcatcaaaatcaacccc 535
>gb|DT509624.1|DT509624 WS02424.BR_E01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_E01 5', mRNA sequence
Length = 538
Score = 48.1 bits (24), Expect = 8e-004
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 446 agtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaac 505
||||||||| ||||| | |||||||| || ||||||||||| || || |||||||| ||
Sbjct: 89 agtatatccaagcctgttatactcaaccttaaactggaaaaccccataaacatcaggcac 30
Query: 506 tttgaaggatgt 517
||||| |||||
Sbjct: 29 cttgaatgatgt 18
>gb|DT520134.1|DT520134 WS02446.B21.1_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_K22 3', mRNA sequence
Length = 599
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1190 tggatcctcatcaaaatcaacccc 1213
||||||||||||||||||||||||
Sbjct: 122 tggatcctcatcaaaatcaacccc 145
>gb|CA932212.1|CA932212 MTU5CS.P10.A10 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 183 tggatcctcatcgaaatcaaccccaca 157
>gb|CA932236.1|CA932236 MTU5CS.P10.D08 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 183 tggatcctcatcgaaatcaaccccaca 157
>gb|CA932392.1|CA932392 MTU5CS.P12.D04 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 183 tggatcctcatcgaaatcaaccccaca 157
>gb|CA932870.1|CA932870 MTU5CS.P18.E07 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 183 tggatcctcatcgaaatcaaccccaca 157
>gb|CV242652.1|CV242652 WS02515.B21_K14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_K14 3', mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 123 tggatcctcatcgaaatcaaccccaca 149
>gb|CV259447.1|CV259447 WS02011.B21_G05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_G05 3', mRNA sequence
Length = 627
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 122 tggatcctcatcgaaatcaaccccaca 148
>gb|CX170045.1|CX170045 G01_69-106_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 695
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 523 tggatcctcatcgaaatcaaccccaca 497
>gb|CX179219.1|CX179219 A03_45-73_01.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 606
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 532 tggatcctcatcgaaatcaaccccaca 506
>gb|CX179431.1|CX179431 F05_45-20_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 641
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 533 tggatcctcatcgaaatcaaccccaca 507
>gb|CX179975.1|CX179975 G01_45-56_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 656
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 552 tggatcctcatcgaaatcaaccccaca 526
>gb|CX185452.1|CX185452 B04_45-58_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 661
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 507 tggatcctcatcgaaatcaaccccaca 481
>gb|DT483652.1|DT483652 WS02523.B21_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_D04 3', mRNA sequence
Length = 891
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 123 tggatcctcatcgaaatcaaccccaca 149
>gb|DT495226.1|DT495226 WS0112.BR_M13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_M13
5', mRNA sequence
Length = 593
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 489 tggatcctcatcgaaatcaaccccaca 463
>gb|DT510501.1|DT510501 WS02426.BR_L16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_L16 5', mRNA sequence
Length = 633
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccaca 1216
|||||||||||| ||||||||||||||
Sbjct: 531 tggatcctcatcgaaatcaaccccaca 505
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 133,430
Number of Sequences: 369679
Number of extensions: 133430
Number of successful extensions: 36880
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36742
Number of HSP's gapped (non-prelim): 109
length of query: 1263
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1244
effective length of database: 196,384,763
effective search space: 244302645172
effective search space used: 244302645172
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)