BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.472
(1282 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX175949.1|CX175949 B03_69-36_03.ab1 leaf inoculated wit... 141 8e-032
gb|BU815061.1|BU815061 N036F09 Populus bark cDNA library Po... 133 2e-029
gb|AJ773289.1|AJ773289 AJ773289 Populus euphratica leaf 3-6... 133 2e-029
gb|DV463261.1|DV463261 MTUNUL1.P13.G01 NUL Populus fremonti... 127 1e-027
gb|DV466498.1|DV466498 MTUNUL1.P6.D09 NUL Populus fremontii... 127 1e-027
gb|CX168707.1|CX168707 A03_69-72_01.ab1 leaf inoculated wit... 121 7e-026
gb|CX177478.1|CX177478 F08_45-54_12.ab1 leaf inoculated wit... 119 3e-025
gb|CX184452.1|CX184452 B08_45-122_04.ab1 leaf inoculated wi... 115 4e-024
gb|BI126025.1|BI126025 I069P40P Populus leaf cDNA library P... 113 2e-023
gb|BU874135.1|BU874135 Q064F11 Populus flower cDNA library ... 105 4e-021
gb|CA926939.1|CA926939 MTU6CR.P3.A07 Aspen root cDNA Librar... 105 4e-021
gb|BU894296.1|BU894296 X005H06 Populus wood cDNA library Po... 101 6e-020
gb|DV465185.1|DV465185 MTUNUL1.P36.C02 NUL Populus fremonti... 96 4e-018
gb|CN522126.1|CN522126 GQ0122.B3_L09 GQ012 Populus trichoca... 86 4e-015
gb|CV281758.1|CV281758 WS0182.B21_M14 PTxD-IL-N-A-9 Populus... 86 4e-015
gb|DT504698.1|DT504698 WS01314.B21_G10 PTxD-IL-FL-A-4 Popul... 86 4e-015
gb|BI136893.1|BI136893 F076P15Y Populus flower cDNA library... 78 9e-013
gb|CV269081.1|CV269081 WS0207.B21_E10 PTxN-IB-N-A-11 Populu... 78 9e-013
gb|DT519483.1|DT519483 WS02441.B21_L17 PTxD-ICC-N-A-14 Popu... 78 9e-013
gb|BU833069.1|BU833069 T041E02 Populus apical shoot cDNA li... 76 4e-012
gb|CK087285.1|CK087285 A002P16.3pR Hybrid aspen plasmid lib... 76 4e-012
gb|DT481155.1|DT481155 WS02531.BR_B01 PT-MB-N-A-15 Populus ... 76 4e-012
gb|DT486465.1|DT486465 WS02531.B21_B01 PT-MB-N-A-15 Populus... 76 4e-012
gb|BI136800.1|BI136800 F074P22Y Populus flower cDNA library... 74 1e-011
gb|BP930391.1|BP930391 BP930391 full-length enriched poplar... 74 1e-011
gb|BU886700.1|BU886700 R049C06 Populus root cDNA library Po... 72 6e-011
gb|AJ774830.1|AJ774830 AJ774830 Populus euphratica shoot 3-... 70 2e-010
gb|BI138057.1|BI138057 F097P75Y Populus flower cDNA library... 68 9e-010
gb|BU897451.1|BU897451 X058B01 Populus wood cDNA library Po... 68 9e-010
gb|CF231502.1|CF231502 PtaC0022B8B0804 Poplar cDNA library ... 68 9e-010
gb|CV226320.1|CV226320 WS0163.B21_O18 PT-DX-A-7 Populus tri... 68 9e-010
gb|DT501834.1|DT501834 WS01314.BR_G10 PTxD-IL-FL-A-4 Populu... 68 9e-010
gb|DT504725.1|DT504725 WS01314.B21_H17 PTxD-IL-FL-A-4 Popul... 68 9e-010
gb|DV462939.1|DV462939 MTUNUL1.P1.F06 NUL Populus fremontii... 68 9e-010
gb|DV465160.1|DV465160 MTUNUL1.P35.G09 NUL Populus fremonti... 68 9e-010
gb|CA933098.1|CA933098 MTU5CS.P3.E03 Aspen stem cDNA Librar... 66 4e-009
gb|CK098029.1|CK098029 A002P16.5pR Hybrid aspen plasmid lib... 66 4e-009
gb|CF235118.1|CF235118 PtaJXT0019B12B1204 Poplar cDNA libra... 64 1e-008
gb|CX660346.1|CX660346 PO01025E04 Poplar SC cDNA library Po... 64 1e-008
gb|BI137221.1|BI137221 F082P44Y Populus flower cDNA library... 60 2e-007
gb|BU883149.1|BU883149 UM86TH08 Populus flower cDNA library... 60 2e-007
gb|BU898069.1|BU898069 X074C05 Populus wood cDNA library Po... 60 2e-007
gb|CN192661.1|CN192661 PtdH1284 hybrid poplar systemically ... 60 2e-007
gb|BP922585.1|BP922585 BP922585 full-length enriched poplar... 60 2e-007
gb|BP927100.1|BP927100 BP927100 full-length enriched poplar... 60 2e-007
gb|BP934028.1|BP934028 BP934028 full-length enriched poplar... 60 2e-007
gb|BP936830.1|BP936830 BP936830 full-length enriched poplar... 60 2e-007
gb|DT526624.1|DT526624 WS02048.C21_I14 PTxN-IB-N-A-11 Popul... 60 2e-007
gb|DV464058.1|DV464058 MTUNUL1.P22.F05 NUL Populus fremonti... 60 2e-007
gb|AI161528.1|AI161528 A002P16U Hybrid aspen plasmid librar... 58 9e-007
gb|CB240355.1|CB240355 PopSC00334 Poplar SC cDNA library Po... 58 9e-007
gb|CV265429.1|CV265429 WS02027.B21_D14 PTxN-IB-N-A-11 Popul... 58 9e-007
gb|BI136929.1|BI136929 F076P91Y Populus flower cDNA library... 54 1e-005
gb|AJ772465.1|AJ772465 AJ772465 Populus euphratica shoot in... 54 1e-005
gb|CX186527.1|CX186527 C07_45-63_05.ab1 leaf inoculated wit... 54 1e-005
gb|BU816145.1|BU816145 N061B10 Populus bark cDNA library Po... 48 8e-004
gb|CK116732.1|CK116732 B016P43 Hybrid aspen plasmid library... 48 8e-004
gb|BP934636.1|BP934636 BP934636 full-length enriched poplar... 48 8e-004
gb|BU813684.1|BU813684 N013G07 Populus bark cDNA library Po... 46 0.003
gb|BU828942.1|BU828942 K031P61P Populus apical shoot cDNA l... 46 0.003
gb|CA934757.1|CA934757 MTU5TS.P23.C12 Aspen stem cDNA Libra... 46 0.003
gb|CA934919.1|CA934919 MTU5TS.P25.G09 Aspen stem cDNA Libra... 46 0.003
gb|BP929396.1|BP929396 BP929396 full-length enriched poplar... 46 0.003
gb|AI166854.1|AI166854 xylem.est.645 Poplar xylem Lambda ZA... 44 0.013
gb|BU823017.1|BU823017 UB46DPH02 Populus tremula cambium cD... 44 0.013
gb|DV463631.1|DV463631 MTUNUL1.P18.D09 NUL Populus fremonti... 44 0.013
gb|CX657380.1|CX657380 PO02044B02 Poplar SC cDNA library Po... 42 0.052
gb|BI136919.1|BI136919 F076P70Y Populus flower cDNA library... 40 0.20
gb|CN549536.1|CN549536 GQ0244.B3_G12 GQ024 Populus trichoca... 40 0.20
gb|CV253667.1|CV253667 WS0222.B21_K05 PTxD-ICC-A-12 Populus... 40 0.20
gb|CV255599.1|CV255599 WS02414.B21_H16 PTxD-ICC-N-A-14 Popu... 40 0.20
gb|CX172660.1|CX172660 C01_69-30_05.ab1 leaf inoculated wit... 40 0.20
>gb|CX175949.1|CX175949 B03_69-36_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 722
Score = 141 bits (71), Expect = 8e-032
Identities = 305/383 (79%)
Strand = Plus / Minus
Query: 858 accatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctcca 917
||||||||||| || ||||| ||||||| ||||| || || ||||||||||||||||||
Sbjct: 691 accatatccatgggataagtgccagacatggctataattcctgcacatgctccagctcca 632
Query: 918 aggcgcaagagcggagtaagctgagcatcctcttcaccagtctgttgacggtaggcccac 977
||||| | || ||||| |||||||||||||| | ||||| || || | ||| ||
Sbjct: 631 aggcgtagaagaggagtgagctgagcatcctcgttgccagtttgctgttgatagagagac 572
Query: 978 agaattccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatc 1037
| |||||||| || || ||||| ||||| |||||||| || || |||||||| || ||
Sbjct: 571 aatattcccttagaagcttgctcatagctgaaaaacttgactgctgaatttgggactata 512
Query: 1038 cttgcacaattggtaccattgcccttgaaaagtccacggaggccctctgttctccagata 1097
| ||||| |||||||| || || ||||| | |||||| | ||||| |||||||| ||
Sbjct: 511 cgagcacagttggtaccgtttcctttgaacaatccacgaaaaccctcagttctccatatg 452
Query: 1098 tacttgagaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagc 1157
|| || | || |||| || |||||||| || ||| |||| |||||||||||||| |||
Sbjct: 451 tattttaacccttgaattgttccattgtattttatgttgtgtggattttgaacctgtagc 392
Query: 1158 aatattttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccg 1217
||||||||||| | || || |||||||||||||| ||||||||||| || ||||| ||
Sbjct: 391 aatattttcaacctctccaggggagcaacagcagtgcgagacactccaccagctacacca 332
Query: 1218 ccggcgacgagcgacttgcagat 1240
||||| || || |||||||||||
Sbjct: 331 ccggcaacaagagacttgcagat 309
>gb|BU815061.1|BU815061 N036F09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 629
Score = 133 bits (67), Expect = 2e-029
Identities = 214/263 (81%)
Strand = Plus / Minus
Query: 687 tcatatacagcgaagttgagaccaacatatggaacaactccgattacagatggaagccac 746
|||||||| || ||||||||||| ||||||||||||||||| || ||||| ||||||||
Sbjct: 279 tcatatactgcaaagttgagacccacatatggaacaactccaatgacagaaggaagccag 220
Query: 747 cctttgtatagagcacgaaagccttcttcacggtagactgtacccagtgcatgaaacata 806
|| ||||| ||||| || |||||||| ||| || || ||||||||||||||
Sbjct: 219 cccttgtacagagcccgtgggccttcttgccggagcacggttgaaagtgcatgaaacatt 160
Query: 807 ccacggtactggtagggagatttgtctgtctgaacagtgatccttcccctaaccatatcc 866
|| | ||| || || |||||||| || ||||| ||||| | ||| || | |||||||||
Sbjct: 159 cctctgtattgataaggagatttatcagtctgtacagtcagcctgcctcgtaccatatcc 100
Query: 867 atcgggtaagtagcagacatagctatgataccagcacatgctccagctccaaggcgcaag 926
|| || ||||| |||||||| ||||| || || ||||||||||||||||||||||| ||
Sbjct: 99 atgggataagttgcagacatggctataattcctgcacatgctccagctccaaggcgtaaa 40
Query: 927 agcggagtaagctgagcatcctc 949
|| ||||| ||||||||||||||
Sbjct: 39 agaggagtgagctgagcatcctc 17
Score = 46.1 bits (23), Expect = 0.003
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 344 ctcgtaagtcacaaatgcaatggcaattgagggcaccaccttgactgagttcggcacaag 403
|||||| |||||||||||||| || || || || || || || ||||| || || || |
Sbjct: 628 ctcgtatgtcacaaatgcaattgctatagatgggactactttcactgaattgggtaccaa 569
Query: 404 acccttgtagagagcaccaactccttcatgacgaacagtcttcctgaatgcatcgatcat 463
||||||||| | || |||| || ||||| |||||||| |||||||||| || |||||
Sbjct: 568 acccttgtataatgctccaaagccctcatgccgaacagttttcctgaatgtgtcaatcat 509
Query: 464 gccattgtact 474
|||||| ||||
Sbjct: 508 gccattatact 498
>gb|AJ773289.1|AJ773289 AJ773289 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000200007H11F1, mRNA sequence
Length = 725
Score = 133 bits (67), Expect = 2e-029
Identities = 301/379 (79%)
Strand = Plus / Minus
Query: 859 ccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctccaa 918
|||||||||| || ||||| |||||||| ||||| || || |||||||||||||||||||
Sbjct: 725 ccatatccataggataagttgcagacattgctataattcctgcacatgctccagctccaa 666
Query: 919 ggcgcaagagcggagtaagctgagcatcctcttcaccagtctgttgacggtaggcccaca 978
|||| || || ||||| |||||||||||||| | ||||| || || | ||| |||
Sbjct: 665 ggcgtaaaagaggagtgagctgagcatcctcattgccagtttgctgttgatagagataca 606
Query: 979 gaattccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatcc 1038
|||||||| || || ||||| ||||| |||||||| || || || ||||| ||||| |
Sbjct: 605 atattcccttggaagcttgctcatagctgaaaaacttgactgctgagtttgggacaatac 546
Query: 1039 ttgcacaattggtaccattgcccttgaaaagtccacggaggccctctgttctccagatat 1098
||||||||||| |||||||| ||||| |||||| | | ||||| || ||||| || |
Sbjct: 545 gagcacaattggtgccattgcctttgaatagtccatgaaaaccctcagtcctccatatgt 486
Query: 1099 acttgagaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagca 1158
| || | || |||| || |||||||| || ||| | || |||||||||||||| ||||
Sbjct: 485 atttcaacccttgaattgttccattgtattttatgttatgtggattttgaacctgtagca 426
Query: 1159 atattttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccgc 1218
||||||||| | || || |||||||||||||| ||||||||||| || || || || |
Sbjct: 425 gtattttcaacctctctaggggagcaacagcagtgcgagacactccaccagcaacaccac 366
Query: 1219 cggcgacgagcgacttgca 1237
|||| || || ||||||||
Sbjct: 365 cggcaacaagagacttgca 347
>gb|DV463261.1|DV463261 MTUNUL1.P13.G01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 866
Score = 127 bits (64), Expect = 1e-027
Identities = 304/384 (79%)
Strand = Plus / Minus
Query: 858 accatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctcca 917
|||||||||| || ||||| |||||||| ||||| || || ||||||||||||||||||
Sbjct: 690 accatatccaggggataagttgcagacattgctataattcctgcacatgctccagctcca 631
Query: 918 aggcgcaagagcggagtaagctgagcatcctcttcaccagtctgttgacggtaggcccac 977
||||| || || ||||| || ||||||||||| | |||||| || || | ||| ||
Sbjct: 630 aggcgtaaaagaggagtgagttgagcatcctcgttaccagtttgctgttgatagagatac 571
Query: 978 agaattccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatc 1037
| |||||||| || || ||||| ||||| |||||||| || || || ||||| |||||
Sbjct: 570 aatattcccttggaagcttgctcatagctgaaaaacttgactgctgagtttgggacaata 511
Query: 1038 cttgcacaattggtaccattgcccttgaaaagtccacggaggccctctgttctccagata 1097
| ||||||||||| |||||||| ||||| |||||| | | ||||| || ||||| ||
Sbjct: 510 cgagcacaattggtgccattgcctttgaatagtccatgaaaaccctcagtcctccatatg 451
Query: 1098 tacttgagaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagc 1157
|| || | || |||| || |||||||| || ||| | || |||||||||||||| |||
Sbjct: 450 tatttcaacccttgaattgttccattgtattttatgttatgtggattttgaacctgtagc 391
Query: 1158 aatattttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccg 1217
| |||||||| | || || |||||||||||||| ||||||||||| || || || ||
Sbjct: 390 agtattttcatcctctccaggggagcaacagcagtgcgagacactccaccagcaacacca 331
Query: 1218 ccggcgacgagcgacttgcagatg 1241
||||| || || ||||||||||||
Sbjct: 330 ccggcaacaagagacttgcagatg 307
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagcca 745
||||||||||| || ||||||| |||||| || ||||| ||||||||
Sbjct: 849 aagttgagacccacgtatggaataactccaatgacagaaggaagcca 803
>gb|DV466498.1|DV466498 MTUNUL1.P6.D09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 672
Score = 127 bits (64), Expect = 1e-027
Identities = 304/384 (79%)
Strand = Plus / Minus
Query: 858 accatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctcca 917
|||||||||| || ||||| |||||||| ||||| || || ||||||||||||||||||
Sbjct: 653 accatatccaggggataagttgcagacattgctataattcctgcacatgctccagctcca 594
Query: 918 aggcgcaagagcggagtaagctgagcatcctcttcaccagtctgttgacggtaggcccac 977
||||| || || ||||| || ||||||||||| | |||||| || || | ||| ||
Sbjct: 593 aggcgtaaaagaggagtgagttgagcatcctcgttaccagtttgctgttgatagagatac 534
Query: 978 agaattccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatc 1037
| |||||||| || || ||||| ||||| |||||||| || || || ||||| |||||
Sbjct: 533 aatattcccttggaagcttgctcatagctgaaaaacttgactgctgagtttgggacaata 474
Query: 1038 cttgcacaattggtaccattgcccttgaaaagtccacggaggccctctgttctccagata 1097
| ||||||||||| |||||||| ||||| |||||| | | ||||| || ||||| ||
Sbjct: 473 cgagcacaattggtgccattgcctttgaatagtccatgaaaaccctcagtcctccatatg 414
Query: 1098 tacttgagaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagc 1157
|| || | || |||| || |||||||| || ||| | || |||||||||||||| |||
Sbjct: 413 tatttcaacccttgaattgttccattgtattttatgttatgtggattttgaacctgtagc 354
Query: 1158 aatattttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccg 1217
| |||||||| | || || |||||||||||||| ||||||||||| || || || ||
Sbjct: 353 agtattttcatcctctccaggggagcaacagcagtgcgagacactccaccagcaacacca 294
Query: 1218 ccggcgacgagcgacttgcagatg 1241
||||| || || ||||||||||||
Sbjct: 293 ccggcaacaagagacttgcagatg 270
>gb|CX168707.1|CX168707 A03_69-72_01.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 692
Score = 121 bits (61), Expect = 7e-026
Identities = 271/341 (79%)
Strand = Plus / Minus
Query: 900 gcacatgctccagctccaaggcgcaagagcggagtaagctgagcatcctcttcaccagtc 959
||||||||||||||||||||||| | || ||||| |||||||||||||| | |||||
Sbjct: 682 gcacatgctccagctccaaggcgtagaagaggagtgagctgagcatcctcgttgccagtt 623
Query: 960 tgttgacggtaggcccacagaattccctttgacgcctgctcgtagctaaaaaacttcacg 1019
|| || | ||| ||| |||||||| || || ||||| ||||| |||||||| ||
Sbjct: 622 tgctgttgatagagagacaatattcccttagaagcttgctcatagctgaaaaacttgact 563
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacggagg 1079
|| |||||||| || || | ||||| |||||||| || || ||||| | |||||| |
Sbjct: 562 gctgaatttgggactatacgagcacagttggtaccgtttcctttgaacaatccacgaaaa 503
Query: 1080 ccctctgttctccagatatacttgagaccctgaacagtaccattgtacttgatgctgtgc 1139
||||| |||||||| || || || | || |||| || |||||||| || ||| ||||
Sbjct: 502 ccctcagttctccatatgtattttaacccttgaattgttccattgtattttatgttgtgt 443
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
|||||||||||||| |||||||||||||| | || || |||||||||||||| ||||||
Sbjct: 442 ggattttgaacctgtagcaatattttcaacctctccaggggagcaacagcagtgcgagac 383
Query: 1200 actccgcctgctacgccgccggcgacgagcgacttgcagat 1240
||||| || ||||| || ||||| || || |||||||||||
Sbjct: 382 actccaccagctacaccaccggcaacaagagacttgcagat 342
>gb|CX177478.1|CX177478 F08_45-54_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 715
Score = 119 bits (60), Expect = 3e-025
Identities = 210/260 (80%)
Strand = Plus / Minus
Query: 981 attccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatcctt 1040
|||||||| || || ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct: 350 attcccttagaagcttgctcatagctgaaaaacttgactgctgaatttgggacaatacga 291
Query: 1041 gcacaattggtaccattgcccttgaaaagtccacggaggccctctgttctccagatatac 1100
||||| |||||||| || || ||||| | |||||| | ||||| |||||||| || ||
Sbjct: 290 gcacagttggtaccgtttcctttgaacaatccacgaaaaccctcagttctccatatgtat 231
Query: 1101 ttgagaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagcaat 1160
|| | || |||| || |||||||| || ||| |||| |||||||||||||| ||||||
Sbjct: 230 tttaacccttgaattgttccattgtattttatgttgtgtggattttgaacctgtagcaat 171
Query: 1161 attttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccgccg 1220
|||||||| | || || |||||||||||||| ||||||||||| || ||||| || |||
Sbjct: 170 attttcaacctctccaggggagcaacagcagtgcgagacactccaccagctacaccaccg 111
Query: 1221 gcgacgagcgacttgcagat 1240
|| || || |||||||||||
Sbjct: 110 gcaacaagagacttgcagat 91
Score = 109 bits (55), Expect = 3e-022
Identities = 202/251 (80%)
Strand = Plus / Minus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgtataga 758
||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||
Sbjct: 632 aagttgagacccacatatggaacaactccaatgacagaaggaagccagcccttgtacaga 573
Query: 759 gcacgaaagccttcttcacggtagactgtacccagtgcatgaaacataccacggtactgg 818
|| || |||||||| ||| || || ||||| |||||||| || | ||| ||
Sbjct: 572 gcccgtgggccttcttgccggagcacggttgaaagtgcgtgaaacattcctctgtattga 513
Query: 819 tagggagatttgtctgtctgaacagtgatccttcccctaaccatatccatcgggtaagta 878
|| |||||||| || ||||| ||||| | ||| || | ||||||||||| || |||||
Sbjct: 512 taaggagatttatcagtctgtacagttagcctgcctcgtaccatatccatgggataagtt 453
Query: 879 gcagacatagctatgataccagcacatgctccagctccaaggcgcaagagcggagtaagc 938
|||||||| ||||| || || ||||||||||||||||||||||| | || ||||| |||
Sbjct: 452 gcagacatggctataattcctgcacatgctccagctccaaggcgtagaagaggagtgagc 393
Query: 939 tgagcatcctc 949
|||||||||||
Sbjct: 392 tgagcatcctc 382
>gb|CX184452.1|CX184452 B08_45-122_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 692
Score = 115 bits (58), Expect = 4e-024
Identities = 271/342 (79%)
Strand = Plus / Minus
Query: 900 gcacatgctccagctccaaggcgcaagagcggagtaagctgagcatcctcttcaccagtc 959
||||||||||||||||||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 686 gcacatgctccagctccaaggcgtaaaagaggagtgagctgagcatcctcattaccagtt 627
Query: 960 tgttgacggtaggcccacagaattccctttgacgcctgctcgtagctaaaaaacttcacg 1019
|| || | ||| ||| ||||||||||| || ||||| ||||| |||||||| ||
Sbjct: 626 tgctgttgatagagatacaatattccctttgaagcttgctcatagctgaaaaacttgact 567
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacggagg 1079
|| || ||||| ||||| | ||||||||||| |||||||| ||||| |||||| | |
Sbjct: 566 gccgagtttgggacaatacgagcacaattggtgccattgcctttgaatagtccatgaaaa 507
Query: 1080 ccctctgttctccagatatacttgagaccctgaacagtaccattgtacttgatgctgtgc 1139
||||| || ||||| || || || | || |||| || |||||||| || ||| | ||
Sbjct: 506 ccctcagtcctccatatgtatttcaacccttgaattgttccattgtattttatgttatgt 447
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
|||||||||||||| |||| |||||||| | || || |||||||||||||| |||||
Sbjct: 446 ggattttgaacctgtagcagtattttcatcctctccaggggagcaacagcagtgcgagaa 387
Query: 1200 actccgcctgctacgccgccggcgacgagcgacttgcagatg 1241
||||| || || || || ||||| || || ||||||||||||
Sbjct: 386 actccaccagcaacaccaccggcaacaagagacttgcagatg 345
>gb|BI126025.1|BI126025 I069P40P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 493
Score = 113 bits (57), Expect = 2e-023
Identities = 141/169 (83%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct: 300 tcagtcagatatcctcatctcgactccaagaacatccttcaccacctcgtatgtcacaaa 241
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || ||||| || |||||||| ||||| || || || | ||||||||| | ||
Sbjct: 240 tgcaattgctattgaagggaccaccttcactgaattggggaccaaacccttgtacaatgc 181
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgcca 467
|||| ||| ||||| ||||| || |||||||| ||||| | |||||||
Sbjct: 180 tccaaatccctcatggcgaactgttttcctgaaggcatcaaccatgcca 132
Score = 42.1 bits (21), Expect = 0.052
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| ||||||||||||||||||| | ||| |||||||| || || || || |||||||
Sbjct: 73 tccagccaaccatctgcattcttcgtcggataacatcaagaggataagccactgtctggc 14
Query: 580 c 580
|
Sbjct: 13 c 13
>gb|BU874135.1|BU874135 Q064F11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 629
Score = 105 bits (53), Expect = 4e-021
Identities = 140/169 (82%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || ||||||||| | |||||||| ||||||||
Sbjct: 280 tcagtcagatatcctcatctcgactccaagaacatccttcgccacctcgtatgtcacaaa 221
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || ||||| || |||||||| ||||| || || || | ||||||||| | ||
Sbjct: 220 tgcaattgctattgaagggaccaccttcactgaattggggaccaaacccttgtacaatgc 161
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgcca 467
|||| ||| ||||| ||||| || |||||||| ||||| | |||||||
Sbjct: 160 tccaaatccctcatggcgaactgttttcctgaaggcatcaaccatgcca 112
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 520 tccaaccaaccatctgcattcttc 543
|||| |||||||||||||||||||
Sbjct: 53 tccagccaaccatctgcattcttc 30
>gb|CA926939.1|CA926939 MTU6CR.P3.A07 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 638
Score = 105 bits (53), Expect = 4e-021
Identities = 299/381 (78%)
Strand = Plus / Plus
Query: 861 atatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctccaagg 920
|||||||| || ||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 1 atatccatgggataagttgcagacattgctataattcctgcgcatgctccagctccaagg 60
Query: 921 cgcaagagcggagtaagctgagcatcctcttcaccagtctgttgacggtaggcccacaga 980
|| || || ||||| |||||||||||||| | |||||| || || | ||| |||
Sbjct: 61 cgtaaaagaggagtgagctgagcatcctcattaccagtttgctgttgatagagatacaat 120
Query: 981 attccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatcctt 1040
|||||||| || || ||||| ||||| || | ||| || || || ||||| || || | |
Sbjct: 121 attcccttggaagcttgctcatagctgaagagcttgactgccgagtttgggacgatacgt 180
Query: 1041 gcacaattggtaccattgcccttgaaaagtccacggaggccctctgttctccagatatac 1100
||||||||||| |||||||| ||||| |||||| | | ||||| || ||||| || ||
Sbjct: 181 gcacaattggtgccattgcctttgaatagtccatgaaaaccctcagtcctccatatgtat 240
Query: 1101 ttgagaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagcaat 1160
|| | || |||| || |||||||| || ||| | || |||||||||||||| | || |
Sbjct: 241 ttcaacccttgaattgttccattgtattttatgttatgtggattttgaacctgtaacagt 300
Query: 1161 attttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccgccg 1220
|||||||| | || || |||||||||||||| ||||||||||| || || || || |||
Sbjct: 301 attttcaacctctccaggggagcaacagcagtgcgagacactccaccagcaacaccaccg 360
Query: 1221 gcgacgagcgacttgcagatg 1241
|| || || ||| ||||||||
Sbjct: 361 gcaacaagagacctgcagatg 381
>gb|BU894296.1|BU894296 X005H06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 546
Score = 101 bits (51), Expect = 6e-020
Identities = 132/159 (83%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct: 522 tcagtcagatatcctcatctcgactccaagaacatccttcaccacctcgtatgtcacaaa 463
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || ||||| || |||||||| ||||| || || || | ||||||||| | ||
Sbjct: 462 tgcaattgctattgaagggaccaccttcactgaattggggaccaaacccttgtacaatgc 403
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatc 457
|||| ||| ||||| ||||| || ||||||| |||||
Sbjct: 402 tccaaatccctcatggcgaactgttctcctgaaggcatc 364
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| ||||||||||||||||||| | ||| |||||||| || || || || |||||||
Sbjct: 295 tccagccaaccatctgcattcttcgtcggataacatcaagaggataagccactgtctggc 236
Query: 580 caa 582
|||
Sbjct: 235 caa 233
>gb|DV465185.1|DV465185 MTUNUL1.P36.C02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 905
Score = 95.6 bits (48), Expect = 4e-018
Identities = 174/216 (80%)
Strand = Plus / Minus
Query: 858 accatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctcca 917
|||||||||| || ||||| |||||||| ||||| || || ||||||||||||||||||
Sbjct: 286 accatatccaggggataagttgcagacattgctataattcctgcacatgctccagctcca 227
Query: 918 aggcgcaagagcggagtaagctgagcatcctcttcaccagtctgttgacggtaggcccac 977
||||| || || ||||| || ||||||||||| | |||||| || || | ||| ||
Sbjct: 226 aggcgtaaaagaggagtgagttgagcatcctcgttaccagtttgctgttgatagagatac 167
Query: 978 agaattccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatc 1037
| |||||||| || || ||||| ||||| |||||||| || || || ||||| |||||
Sbjct: 166 aatattcccttggaagcttgctcatagctgaaaaacttgactgctgagtttgggacaata 107
Query: 1038 cttgcacaattggtaccattgcccttgaaaagtcca 1073
| ||||||||||| |||||||| ||||| ||||||
Sbjct: 106 cgagcacaattggtgccattgcctttgaatagtcca 71
Score = 60.0 bits (30), Expect = 2e-007
Identities = 105/130 (80%)
Strand = Plus / Minus
Query: 351 gtcacaaatgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttg 410
|||||||||||||| || || || || || ||||| ||||| || || || | |||||||
Sbjct: 799 gtcacaaatgcaattgctatggatggaactaccttcactgaatttggtaccaaacccttg 740
Query: 411 tagagagcaccaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattg 470
|| | || |||| || ||||| |||||||| |||||||||||||| ||||||||| |
Sbjct: 739 tataatgctccaaagccctcatgccgaacagttttcctgaatgcatcaatcatgccagta 680
Query: 471 tactggagtg 480
|||| |||||
Sbjct: 679 tactcgagtg 670
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgta 754
||||||||||| || ||||||| |||||| || ||||| |||||||| || |||||
Sbjct: 445 aagttgagacccacgtatggaataactccaatgacagaaggaagccagcccttgta 390
>gb|CN522126.1|CN522126 GQ0122.B3_L09 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_L09 5', mRNA sequence
Length = 611
Score = 85.7 bits (43), Expect = 4e-015
Identities = 130/159 (81%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || || |||||||| | |||||| ||||||||
Sbjct: 326 tcagtcagatatcctcatctcaactccaagaacgtccttcaccatctcgtatgtcacaaa 267
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || |||||||| ||||| || || || | ||||||||| | ||
Sbjct: 266 tgcaattgctatcgaagggaccaccttcactgaattggggaccaaacccttgtacaatgc 207
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatc 457
|||| ||| ||||| ||||| || |||||||| |||||
Sbjct: 206 tccaaatccctcatggcgaactgttttcctgaaggcatc 168
Score = 42.1 bits (21), Expect = 0.052
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| ||||||||||||||||||| | ||| |||||||| || || || || |||||||
Sbjct: 99 tccagccaaccatctgcattcttcgtcggataacatcaagaggataagccactgtctggc 40
Query: 580 c 580
|
Sbjct: 39 c 39
>gb|CV281758.1|CV281758 WS0182.B21_M14 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0182_M14 3', mRNA sequence
Length = 605
Score = 85.7 bits (43), Expect = 4e-015
Identities = 130/159 (81%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || || |||||||| | |||||| ||||||||
Sbjct: 319 tcagtcagatatcctcatctcaactccaagaacgtccttcaccatctcgtatgtcacaaa 378
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || |||||||| ||||| || || || | ||||||||| | ||
Sbjct: 379 tgcaattgctatcgaagggaccaccttcactgaattggggaccaaacccttgtacaatgc 438
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatc 457
|||| ||| ||||| ||||| || |||||||| |||||
Sbjct: 439 tccaaatccctcatggcgaactgttttcctgaaggcatc 477
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 520 tccaaccaaccatctgcattcttc 543
|||| |||||||||||||||||||
Sbjct: 546 tccagccaaccatctgcattcttc 569
>gb|DT504698.1|DT504698 WS01314.B21_G10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_G10 3', mRNA sequence
Length = 909
Score = 85.7 bits (43), Expect = 4e-015
Identities = 130/159 (81%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || || |||||||| | |||||| ||||||||
Sbjct: 360 tcagtcagatatcctcatctcaactccaagaacgtccttcaccatctcgtatgtcacaaa 419
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || |||||||| ||||| || || || | ||||||||| | ||
Sbjct: 420 tgcaattgctatcgaagggaccaccttcactgaattggggaccaaacccttgtacaatgc 479
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatc 457
|||| ||| ||||| ||||| || |||||||| |||||
Sbjct: 480 tccaaatccctcatggcgaactgttttcctgaaggcatc 518
Score = 42.1 bits (21), Expect = 0.052
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| ||||||||||||||||||| | ||| |||||||| || || || || |||||||
Sbjct: 587 tccagccaaccatctgcattcttcgtcggataacatcaagaggataagccactgtctggc 646
Query: 580 c 580
|
Sbjct: 647 c 647
>gb|BI136893.1|BI136893 F076P15Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 436
Score = 77.8 bits (39), Expect = 9e-013
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || ||| | || |||||||||||||| |||| |||||||| | || ||
Sbjct: 432 ccattgtattttatgttatgtggattttgaacctgtagcagtattttcatcctctccagg 373
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
|||||||||||||| ||||||||||| || ||||| || ||||| || || |||||||||
Sbjct: 372 ggagcaacagcagtgcgagacactccaccagctacaccaccggcaacaagagacttgcag 313
Query: 1239 atg 1241
|||
Sbjct: 312 atg 310
>gb|CV269081.1|CV269081 WS0207.B21_E10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0207_E10 3', mRNA sequence
Length = 794
Score = 77.8 bits (39), Expect = 9e-013
Identities = 129/159 (81%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || || |||||||| | |||||| ||||||||
Sbjct: 270 tcagtcagatatcctcatctcaactccaagaacgtccttcaccatctcgtatgtcacaaa 329
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || |||||||| ||||| || || || | |||||||| | ||
Sbjct: 330 tgcaattgctatcgaagggaccaccttcactgaattggggaccaatcccttgtacaatgc 389
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatc 457
|||| ||| ||||| ||||| || |||||||| |||||
Sbjct: 390 tccaaatccctcatggcgaactgttttcctgaaggcatc 428
Score = 42.1 bits (21), Expect = 0.052
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| ||||||||||||||||||| | ||| |||||||| || || || || |||||||
Sbjct: 497 tccagccaaccatctgcattcttcgtcggataacatcaagaggataagccactgtctggc 556
Query: 580 c 580
|
Sbjct: 557 c 557
>gb|DT519483.1|DT519483 WS02441.B21_L17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02441_L17 3', mRNA sequence
Length = 821
Score = 77.8 bits (39), Expect = 9e-013
Identities = 129/159 (81%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || || |||||||| | |||||| ||||||||
Sbjct: 334 tcagtcagatatcctcatctcaactccaagaacgtccttcaccatctcgtatgtcacaaa 393
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || |||||||| ||||| || || || | |||||||| | ||
Sbjct: 394 tgcaattgctatcgaagggaccaccttcactgaattggggaccaatcccttgtacaatgc 453
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatc 457
|||| ||| ||||| ||||| || |||||||| |||||
Sbjct: 454 tccaaatccctcatggcgaactgttttcctgaaggcatc 492
Score = 65.9 bits (33), Expect = 4e-009
Identities = 186/237 (78%)
Strand = Plus / Plus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| ||||||||||||||||||| | ||| |||||||| || || || || |||||||
Sbjct: 561 tccagccaaccatctgcattcttcgtcggataacatcaagaggataagccactgtctggc 620
Query: 580 caatggttcccgccacagctccacacccaagccttgtaactacgtgcagctcgttgtcat 639
| | || ||||| |||| ||||| |||||||||| ||| || ||| ||||| |
Sbjct: 621 cgacagtccccgcagcagccccacaagcaagccttgttgtcacgcccaactcattgtcct 680
Query: 640 ttgcaaggccaaatgaatttgtctggagtagccagtctttgagggactcatatacagcga 699
| || ||||||| ||| || | ||||| ||||||||| || || |||||||||| |
Sbjct: 681 caactagtccaaatggattagttttgagtaaccagtctttaagagattcatatacagaaa 740
Query: 700 agttgagaccaacatatggaacaactccgattacagatggaagccaccctttgtata 756
|||| ||||| |||||||| | |||||| |||||||| || ||||| ||||||||||
Sbjct: 741 agttcagacccacatatggtataactcctattacagaaggcagccagcctttgtata 797
>gb|BU833069.1|BU833069 T041E02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 501
Score = 75.8 bits (38), Expect = 4e-012
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 396 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 337
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| ||||||||||| ||||| || ||||| || || |||||||||
Sbjct: 336 ggagcaacagctgtacgtgacactccgccggctacacccccggctacaagagacttgcag 277
Query: 1239 at 1240
||
Sbjct: 276 at 275
>gb|CK087285.1|CK087285 A002P16.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P16 3', mRNA sequence
Length = 565
Score = 75.8 bits (38), Expect = 4e-012
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||| || |||| ||||||| | || ||||| | ||| || ||||||||
Sbjct: 229 tcagtctgatattctgatctggactcctaaaatgtctttcaccatctcatatgtcacaaa 288
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || || ||||| ||||| || || || | ||||||||| | ||
Sbjct: 289 tgcaattgctatggatggaactaccttcactgaatttggtaccaaacccttgtataatgc 348
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| ||| |||||||||||||| |||||||||||||| ||||||||| | |||| |||
Sbjct: 349 tccaaatccctcatgacgaacagttttcctgaatgcatcaatcatgccagtatactcgag 408
Query: 479 tg 480
||
Sbjct: 409 tg 410
>gb|DT481155.1|DT481155 WS02531.BR_B01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02531_B01 5', mRNA sequence
Length = 445
Score = 75.8 bits (38), Expect = 4e-012
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || || |||||||| |||||||| ||||||||
Sbjct: 80 tcagtcagatatcctcatctcaactccaagaacgtccttcaccacctcgtatgtcacaaa 21
Query: 359 tgcaat 364
||||||
Sbjct: 20 tgcaat 15
>gb|DT486465.1|DT486465 WS02531.B21_B01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02531_B01 3', mRNA sequence
Length = 445
Score = 75.8 bits (38), Expect = 4e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || || |||||||| |||||||| ||||||||
Sbjct: 366 tcagtcagatatcctcatctcaactccaagaacgtccttcaccacctcgtatgtcacaaa 425
Query: 359 tgcaat 364
||||||
Sbjct: 426 tgcaat 431
>gb|BI136800.1|BI136800 F074P22Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 539
Score = 73.8 bits (37), Expect = 1e-011
Identities = 160/201 (79%)
Strand = Plus / Minus
Query: 1041 gcacaattggtaccattgcccttgaaaagtccacggaggccctctgttctccagatatac 1100
||||||||||| |||||||| ||||| |||||| | | ||||| || ||||| || ||
Sbjct: 538 gcacaattggtgccattgcctttgaatagtccatgaaaaccctcagtcctccatatgtat 479
Query: 1101 ttgagaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagcaat 1160
|| | || |||| || |||||||| || ||| | || |||||||||||||| |||| |
Sbjct: 478 ttcaacccttgaattgttccattgtattttatgttatgtggattttgaacctgtagcagt 419
Query: 1161 attttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccgccg 1220
||||||| | || || |||||||||||||| ||||||||||| || || || || |||
Sbjct: 418 attttcatcctctccaggggagcaacagcagtgcgagacactccaccagcaacaccaccg 359
Query: 1221 gcgacgagcgacttgcagatg 1241
|| || || ||||||||||||
Sbjct: 358 gcaacaagagacttgcagatg 338
>gb|BP930391.1|BP930391 BP930391 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-009_F06.r 3', mRNA sequence
Length = 478
Score = 73.8 bits (37), Expect = 1e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||| |||||||||||||| ||||| || || |||||||| | |||||| ||||||||
Sbjct: 329 tcagtcagatatcctcatctcaactccaagaacgtccttcaccatctcgtatgtcacaaa 388
Query: 359 tgcaatggcaattgagggcaccaccttgactga 391
|||||| || || || || |||||||| |||||
Sbjct: 389 tgcaattgctatcgaagggaccaccttcactga 421
>gb|BU886700.1|BU886700 R049C06 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 494
Score = 71.9 bits (36), Expect = 6e-011
Identities = 204/260 (78%)
Strand = Plus / Minus
Query: 981 attccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatcctt 1040
|||||||| || || | ||| ||||| || ||||| || || |||||||||||||| |
Sbjct: 458 attcccttggatgcttcctcatagctgaagaacttgactgctgaatttggaacaattcga 399
Query: 1041 gcacaattggtaccattgcccttgaaaagtccacggaggccctctgttctccagatatac 1100
|||||||| || |||||||| || | | ||| | | |||||| |||||||| || ||
Sbjct: 398 gcacaattagttccattgcctttagacattcctcttaagccctcagttctccatatgtat 339
Query: 1101 ttgagaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagcaat 1160
|| | ||| |||| || |||||||| || || ||||| |||||||||||||| || | |
Sbjct: 338 ttcaaaccttgaatggttccattgtattttatactgtgaggattttgaacctgtagaagt 279
Query: 1161 attttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccgccg 1220
||||| | || ||| | ||||||||||| ||||| |||||||| || ||||| || |||
Sbjct: 278 atttttagtctttctaaaggagcaacagctgtacgtgacactccaccggctacacccccg 219
Query: 1221 gcgacgagcgacttgcagat 1240
|| || || |||||||||||
Sbjct: 218 gctacaagagacttgcagat 199
>gb|AJ774830.1|AJ774830 AJ774830 Populus euphratica shoot 3-6 months Populus euphratica cDNA
clone P0000300024G05F1, mRNA sequence
Length = 574
Score = 69.9 bits (35), Expect = 2e-010
Identities = 170/215 (79%)
Strand = Plus / Minus
Query: 1026 tttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacggaggccctct 1085
||||| ||||| || |||||||| || |||||||| || || | ||| | | ||||||
Sbjct: 440 tttgggacaattctagcacaattagttccattgcctttaaacattcctctcaagccctca 381
Query: 1086 gttctccagatatacttgagaccctgaacagtaccattgtacttgatgctgtgcggattt 1145
|||||||| || || || | ||| |||| || |||||||| || || ||||| ||||||
Sbjct: 380 gttctccatatgtatttcaaaccttgaatggttccattgtattttatactgtgaggattt 321
Query: 1146 tgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagacactccg 1205
|||||||| || | |||||| | || ||| | ||||||||||| ||||| ||||||||
Sbjct: 320 tgaacctgtagaagtatttttagtctttctaaaggagcaacagctgtacgtgacactcca 261
Query: 1206 cctgctacgccgccggcgacgagcgacttgcagat 1240
|| ||||| || ||||| || || |||||||||||
Sbjct: 260 ccggctacacccccggctacaagagacttgcagat 226
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 897 ccagcacatgctccagctccaaggcgcaagagcggagtaagctgagcatc 946
||||||||||| ||||||||||| || | || ||||||||||| |||||
Sbjct: 569 ccagcacatgcaccagctccaagacgtagaagaggagtaagctgggcatc 520
>gb|BI138057.1|BI138057 F097P75Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 439
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
|||||||||||||| |||| |||||||| | || || |||||||||||||| ||||||
Sbjct: 439 ggattttgaacctgtagcagtattttcatcctctccaggggagcaacagcagtgcgagac 380
Query: 1200 actccgcctgctacgccgccggcgacgagcgacttgcagatg 1241
||||| || || || || ||||| || || ||||||||||||
Sbjct: 379 actccaccagcaacaccaccggcaacaagagacttgcagatg 338
>gb|BU897451.1|BU897451 X058B01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 577
Score = 67.9 bits (34), Expect = 9e-010
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 397 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 338
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| |||||||| || ||||| || ||||| || || |||||||||
Sbjct: 337 ggagcaacagctgtacgtgacactccaccggctacacccccggctacaagagacttgcag 278
Query: 1239 at 1240
||
Sbjct: 277 at 276
>gb|CF231502.1|CF231502 PtaC0022B8B0804 Poplar cDNA library from cambial zone Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 723
Score = 67.9 bits (34), Expect = 9e-010
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 406 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 347
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| |||||||| || ||||| || ||||| || || |||||||||
Sbjct: 346 ggagcaacagctgtacgtgacactccaccggctacacccccggctacaagagacttgcag 287
Query: 1239 at 1240
||
Sbjct: 286 at 285
Score = 60.0 bits (30), Expect = 2e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 857 aaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctcc 916
|||||| ||||| |||||||| || ||||| || || || ||||||||||| ||||||||
Sbjct: 668 aaccatgtccattgggtaagttgctgacatggcaataattccagcacatgcaccagctcc 609
Query: 917 aaggcgcaagagcggagtaagctgagcatc 946
||| || | || ||||||||||| |||||
Sbjct: 608 aagacgtagaagaggagtaagctgggcatc 579
>gb|CV226320.1|CV226320 WS0163.B21_O18 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_O18
3', mRNA sequence
Length = 893
Score = 67.9 bits (34), Expect = 9e-010
Identities = 145/182 (79%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||| || |||| ||||||| | || ||||| | ||| || ||||||||
Sbjct: 274 tcagtctgatattctgatctggactcctaaaatgtctttcaccatctcatatgtcacaaa 333
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || || ||||| |||||||| || || | ||||||||| | ||
Sbjct: 334 tgcaattgctatggatggaactaccttcactgagtttggtaccaaacccttgtataatgc 393
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| || ||||| |||||||| |||||||||||||| ||||||||| | |||| |||
Sbjct: 394 tccaaagccctcatgccgaacagttttcctgaatgcatcaatcatgccagtatactcgag 453
Query: 479 tg 480
||
Sbjct: 454 tg 455
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgta 754
||||||||||| || ||||||| |||||| || ||||| |||||||| || |||||
Sbjct: 680 aagttgagacccacgtatggaataactccaatgacagaaggaagccagcccttgta 735
Score = 46.1 bits (23), Expect = 0.003
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 858 accatatccatcgggtaagtagcagacatagctatgataccagcacatgctccag 912
|||||||||| || ||||| |||||||| ||||| || || |||||||||||||
Sbjct: 839 accatatccaggggataagttgcagacattgctataattcctgcacatgctccag 893
>gb|DT501834.1|DT501834 WS01314.BR_G10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_G10 5', mRNA sequence
Length = 842
Score = 67.9 bits (34), Expect = 9e-010
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 857 aaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctcc 916
|||||| ||||| |||||||| || ||||| || || || ||||||||||| ||||||||
Sbjct: 660 aaccatgtccattgggtaagttgctgacatggcaataattccagcacatgcaccagctcc 601
Query: 917 aaggcgcaagagcggagtaagctgagcatc 946
||| || | || |||||||||||||||||
Sbjct: 600 aagacgtagaagaggagtaagctgagcatc 571
Score = 60.0 bits (30), Expect = 2e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 398 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 339
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| ||||| || || ||||| || ||||| || || |||||||||
Sbjct: 338 ggagcaacagctgtacgtgacacgccaccggctacacccccggctacaagagacttgcag 279
Query: 1239 at 1240
||
Sbjct: 278 at 277
>gb|DT504725.1|DT504725 WS01314.B21_H17 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_H17 3', mRNA sequence
Length = 874
Score = 67.9 bits (34), Expect = 9e-010
Identities = 145/182 (79%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||| || |||| ||||||| | || ||||| | ||| || ||||||||
Sbjct: 317 tcagtctgatattctgatctggactcctaaaatgtctttcaccatctcatatgtcacaaa 376
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || || ||||| |||||||| || || | ||||||||| | ||
Sbjct: 377 tgcaattgctatggatggaactaccttcactgagtttggtaccaaacccttgtataatgc 436
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| || ||||| |||||||| |||||||||||||| ||||||||| | |||| |||
Sbjct: 437 tccaaagccctcatgccgaacagttttcctgaatgcatcaatcatgccagtatactcgag 496
Query: 479 tg 480
||
Sbjct: 497 tg 498
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgta 754
||||||||||| || ||||||| |||||| || ||||| |||||||| || |||||
Sbjct: 723 aagttgagacccacgtatggaataactccaatgacagaaggaagccagcccttgta 778
>gb|DV462939.1|DV462939 MTUNUL1.P1.F06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 742
Score = 67.9 bits (34), Expect = 9e-010
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 857 aaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctcc 916
|||||| ||||| |||||||| || ||||| || || || ||||||||||| ||||||||
Sbjct: 597 aaccatgtccattgggtaagtggctgacatggcaataattccagcacatgcaccagctcc 538
Query: 917 aaggcgcaagagcggagtaagctgagcatc 946
||| || | || |||||||||||||||||
Sbjct: 537 aagacgtagaagaggagtaagctgagcatc 508
Score = 60.0 bits (30), Expect = 2e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 359 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 300
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| ||||| || || ||||| || ||||| || || |||||||||
Sbjct: 299 ggagcaacagctgtacgtgacacgccaccggctacacccccggctacaagagacttgcag 240
Query: 1239 at 1240
||
Sbjct: 239 at 238
>gb|DV465160.1|DV465160 MTUNUL1.P35.G09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 829
Score = 67.9 bits (34), Expect = 9e-010
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgtataga 758
||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||
Sbjct: 716 aagttgagacccacatatggaacaactccaatgacagaaggaagccagcccttgtacaga 775
Query: 759 gc 760
||
Sbjct: 776 gc 777
Score = 44.1 bits (22), Expect = 0.013
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 552 acatcaagcgggtatgcaacagtctggccaatggttcccgccacagctccacacccaagc 611
|||||||| || || |||||||| ||||||||||| ||||| |||| ||||| | |||
Sbjct: 569 acatcaagaggataagcaacagtttggccaatggtccccgcagcagccccacaagctagc 628
Query: 612 cttgta 617
||||||
Sbjct: 629 cttgta 634
Score = 40.1 bits (20), Expect = 0.20
Identities = 137/176 (77%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||| || || || ||||||| | || ||||| | |||||| ||||||||
Sbjct: 310 tcagtctgatattctgatttcaactcctaaaatgtctttcaccatctcgtatgtcacaaa 369
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||| || || || || || || ||||| ||||| || || || | ||||||||| | ||
Sbjct: 370 tgcgattgctatagatgggactaccttcactgaattgggtaccaaacccttgtataatgc 429
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtact 474
|||| || ||||| ||||||| |||||||||| || ||||||||||| ||||
Sbjct: 430 tccaaagccctcatgctgaacagttttcctgaatgtgtcaatcatgccattatact 485
>gb|CA933098.1|CA933098 MTU5CS.P3.E03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 356
Score = 65.9 bits (33), Expect = 4e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 420 ccaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggagt 479
|||| ||| ||||| |||||||| |||||||||||||| ||||||||| | |||||||||
Sbjct: 19 ccaaatccctcatgccgaacagttttcctgaatgcatcaatcatgccagtatactggagt 78
Query: 480 g 480
|
Sbjct: 79 g 79
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagcca 745
||||||||||| || ||||||| |||||| || ||||| ||||||||
Sbjct: 304 aagttgagacccacgtatggaataactccaatgacagaaggaagcca 350
>gb|CK098029.1|CK098029 A002P16.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P16 5', mRNA sequence
Length = 519
Score = 65.9 bits (33), Expect = 4e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 420 ccaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggagt 479
|||| ||| |||||||||||||| |||||||||||||| ||||||||| | |||| ||||
Sbjct: 458 ccaaatccctcatgacgaacagttttcctgaatgcatcaatcatgccagtatactcgagt 399
Query: 480 g 480
|
Sbjct: 398 g 398
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgta 754
||||||||||| || ||||||| |||||| || ||||| |||||||| || |||||
Sbjct: 173 aagttgagacccacgtatggaataactccaatgacagaaggaagccagcccttgta 118
>gb|CF235118.1|CF235118 PtaJXT0019B12B1204 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 594
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 429 tcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggagtg 480
||||| |||||||| |||||||||||||| ||||||||| |||||| |||||
Sbjct: 316 tcatgccgaacagttttcctgaatgcatcaatcatgccagtgtactcgagtg 265
>gb|CX660346.1|CX660346 PO01025E04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025E04 5', mRNA sequence
Length = 634
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgta 754
||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 56 aagttgagacccacatatggaacaactccaatgacagaaggaagccagcccttgta 1
Score = 48.1 bits (24), Expect = 8e-004
Identities = 138/176 (78%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||| || || || ||||||| | || ||||| | |||||| ||||||||
Sbjct: 463 tcagtctgatattctgatttcaactcctaaaatgtctttcaccatctcgtatgtcacaaa 404
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || || || || ||||| || || || | ||||||||| | ||
Sbjct: 403 tgcaattgctatagatgggactactttcactgaattgggtaccaaacccttgtataatgc 344
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtact 474
|||| || ||||| |||||||| |||||||||| || ||||||||||| ||||
Sbjct: 343 tccaaagccctcatgccgaacagttttcctgaatgtgtctatcatgccattatact 288
>gb|BI137221.1|BI137221 F082P44Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 459
Score = 60.0 bits (30), Expect = 2e-007
Identities = 84/102 (82%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
|||||||||||||| |||| |||||||| | || || ||||| |||||||| ||||||
Sbjct: 439 ggattttgaacctgtagcagtattttcatcctctccaggggagctacagcagtgcgagac 380
Query: 1200 actccgcctgctacgccgccggcgacgagcgacttgcagatg 1241
||||| || || || || ||||| || || ||||||||||||
Sbjct: 379 actccaccagcaacaccaccggcaacaagagacttgcagatg 338
>gb|BU883149.1|BU883149 UM86TH08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 618
Score = 60.0 bits (30), Expect = 2e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 394 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 335
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| ||||| || || ||||| || ||||| || || |||||||||
Sbjct: 334 ggagcaacagctgtacgtgacacgccaccagctacacccccggctacaagagacttgcag 275
Query: 1239 at 1240
||
Sbjct: 274 at 273
>gb|BU898069.1|BU898069 X074C05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 465
Score = 60.0 bits (30), Expect = 2e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 857 aaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagctcc 916
|||||| ||||| |||||||| || ||||| || || || ||||||||||| ||||||||
Sbjct: 158 aaccatgtccattgggtaagttgctgacatggcaataattccagcacatgcaccagctcc 99
Query: 917 aaggcgcaagagcggagtaagctgagcatc 946
||| || | || ||||||||||| |||||
Sbjct: 98 aagacgtagaagaggagtaagctgggcatc 69
>gb|CN192661.1|CN192661 PtdH1284 hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 425
Score = 60.0 bits (30), Expect = 2e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 276 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 217
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| ||||| || || ||||| || ||||| || || |||||||||
Sbjct: 216 ggagcaacagctgtacgtgacacgccaccagctacacccccggctacaagagacttgcag 157
Query: 1239 at 1240
||
Sbjct: 156 at 155
>gb|BP922585.1|BP922585 BP922585 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-009_F06.f 5', mRNA sequence
Length = 598
Score = 60.0 bits (30), Expect = 2e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 407 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 348
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| ||||| || || ||||| || ||||| || || |||||||||
Sbjct: 347 ggagcaacagctgtacgtgacacgccaccggctacacccccggctacaagagacttgcag 288
Query: 1239 at 1240
||
Sbjct: 287 at 286
>gb|BP927100.1|BP927100 BP927100 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-067_M18.f 5', mRNA sequence
Length = 405
Score = 60.0 bits (30), Expect = 2e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 338 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 279
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| ||||| || || ||||| || ||||| || || |||||||||
Sbjct: 278 ggagcaacagctgtacgtgacacgccaccggctacacccccggctacaagagacttgcag 219
Query: 1239 at 1240
||
Sbjct: 218 at 217
>gb|BP934028.1|BP934028 BP934028 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-059_H08.r 3', mRNA sequence
Length = 586
Score = 60.0 bits (30), Expect = 2e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||| || |||| ||||||| | || ||||| | ||| || ||||||||
Sbjct: 253 tcagtctgatattctgatctggactcctaaaatgtctttcaccatctcatatgtcacaaa 312
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || || ||||| ||||| || || || | ||||||||| | ||
Sbjct: 313 tgcaattgctatggatggaactaccttcactgaatttggtaccaaacccttgtataatgc 372
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| || ||||| |||||||| |||||||||||||| ||||||||| | |||| |||
Sbjct: 373 tccaaagccctcatgccgaacagttttcctgaatgcatcaatcatgccagtatactcgag 432
Query: 479 tg 480
||
Sbjct: 433 tg 434
>gb|BP936830.1|BP936830 BP936830 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-097_C22.r 3', mRNA sequence
Length = 661
Score = 60.0 bits (30), Expect = 2e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||| || |||| ||||||| | || ||||| | ||| || ||||||||
Sbjct: 254 tcagtctgatattctgatctggactcctaaaatgtctttcaccatctcatatgtcacaaa 313
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || || ||||| ||||| || || || | ||||||||| | ||
Sbjct: 314 tgcaattgctatggatggaactaccttcactgaatttggtaccaaacccttgtataatgc 373
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| || ||||| |||||||| |||||||||||||| ||||||||| | |||| |||
Sbjct: 374 tccaaagccctcatgccgaacagttttcctgaatgcatcaatcatgccagtatactcgag 433
Query: 479 tg 480
||
Sbjct: 434 tg 435
>gb|DT526624.1|DT526624 WS02048.C21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_I14 3', mRNA sequence
Length = 881
Score = 60.0 bits (30), Expect = 2e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||| || |||| ||||||| | || ||||| | ||| || ||||||||
Sbjct: 264 tcagtctgatattctgatctggactcctaaaatgtctttcaccatctcatatgtcacaaa 323
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||| || || || || || ||||| ||||| || || || | ||||||||| | ||
Sbjct: 324 tgcaattgctatggatggaactaccttcactgaatttggtaccaaacccttgtataatgc 383
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| || ||||| |||||||| |||||||||||||| ||||||||| | |||| |||
Sbjct: 384 tccaaagccctcatgccgaacagttttcctgaatgcatcaatcatgccagtatactcgag 443
Query: 479 tg 480
||
Sbjct: 444 tg 445
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 858 accatatccatcgggtaagtagcagacatagctatgataccagcacatgctcc 910
||||||||||| || ||||| |||||||| ||||| || || |||||||||||
Sbjct: 829 accatatccatgggataagttgcagacattgctataattcctgcacatgctcc 881
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgta 754
||||||||||| || ||||||| |||||| || ||||| |||||||| || |||||
Sbjct: 670 aagttgagacccacgtatggaataactccaatgacagaaggaagccagcccttgta 725
>gb|DV464058.1|DV464058 MTUNUL1.P22.F05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 842
Score = 60.0 bits (30), Expect = 2e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|||||||| || || ||||| |||||||||||||| || | |||||| | || ||| |
Sbjct: 364 ccattgtattttatactgtgaggattttgaacctgtagaagtatttttagtctttctaaa 305
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||| ||||| ||||| || || ||||| || ||||| || || |||||||||
Sbjct: 304 ggagcaacagctgtacgtgacacgccaccggctacacccccggctacaagagacttgcag 245
Query: 1239 at 1240
||
Sbjct: 244 at 243
>gb|AI161528.1|AI161528 A002P16U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 633
Score = 58.0 bits (29), Expect = 9e-007
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 420 ccaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggagt 479
|||| ||| |||||||||||||| |||||||||||||| ||||||||| | |||| ||||
Sbjct: 449 ccaaatccctcatgacgaacagt-ttcctgaatgcatcaatcatgccagtatactcgagt 391
Query: 480 g 480
|
Sbjct: 390 g 390
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/56 (85%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 699 aagttgagaccaacatatggaacaactccgattacagatggaagccaccctttgta 754
||||||||||| || ||||||| |||||| || ||||| |||||||| || |||||
Sbjct: 166 aagttgagacccacgtatggaataactccaatgacaga-ggaagccagcccttgta 112
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,198
Number of Sequences: 369679
Number of extensions: 156198
Number of successful extensions: 51759
Number of sequences better than 0.5: 72
Number of HSP's better than 0.5 without gapping: 71
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51569
Number of HSP's gapped (non-prelim): 167
length of query: 1282
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1263
effective length of database: 196,384,763
effective search space: 248033955669
effective search space used: 248033955669
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)