BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.452
(1348 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK091144.1|CK091144 F051P15.3pR Populus flower cDNA libr... 46 0.003
gb|CN520791.1|CN520791 GQ0105.B3_I09 GQ010 Populus trichoca... 46 0.003
gb|CV229178.1|CV229178 WS01912.B21_H11 PT-DX-N-A-10 Populus... 46 0.003
gb|CV259037.1|CV259037 WS02010.B21_D05 PTxN-IB-N-A-11 Popul... 46 0.003
gb|CV258010.1|CV258010 WS0248.B21_E12 PTxD-ICC-N-A-14 Popul... 40 0.22
gb|CV259454.1|CV259454 WS02011.B21_G12 PTxN-IB-N-A-11 Popul... 40 0.22
gb|CV274195.1|CV274195 WS0172.B21_I06 PTxD-NR-A-8 Populus t... 40 0.22
gb|CV276627.1|CV276627 WS0141.B21_F14 PTxD-IL-A-5 Populus t... 40 0.22
gb|CV279057.1|CV279057 WS0148.B21_E02 PTxD-IL-A-5 Populus t... 40 0.22
gb|CX169630.1|CX169630 H07_69-106_15.ab1 leaf inoculated wi... 40 0.22
gb|CX170056.1|CX170056 F09_69-8_11.ab1 leaf inoculated with... 40 0.22
gb|CX174960.1|CX174960 C04_69-1_06.ab1 leaf inoculated with... 40 0.22
gb|CX177719.1|CX177719 E03_45-31_09.ab1 leaf inoculated wit... 40 0.22
gb|CX177850.1|CX177850 A08_45-72_02.ab1 leaf inoculated wit... 40 0.22
gb|CX178801.1|CX178801 D12_45-86_08.ab1 leaf inoculated wit... 40 0.22
gb|CX178911.1|CX178911 C09_45-83_05.ab1 leaf inoculated wit... 40 0.22
gb|CX180623.1|CX180623 G06_45-97_14.ab1 leaf inoculated wit... 40 0.22
gb|CX181685.1|CX181685 C11_45-89_05.ab1 leaf inoculated wit... 40 0.22
gb|CX182562.1|CX182562 A08_45-40_02.ab1 leaf inoculated wit... 40 0.22
gb|CX184648.1|CX184648 E05_45-121_09.ab1 leaf inoculated wi... 40 0.22
gb|CX186583.1|CX186583 E09_45-100_09.ab1 leaf inoculated wi... 40 0.22
gb|CX187053.1|CX187053 D01_45-35_07.ab1 leaf inoculated wit... 40 0.22
gb|DT502121.1|DT502121 WS01315.BR_K23 PTxD-IL-FL-A-4 Populu... 40 0.22
gb|DT524602.1|DT524602 WS02043.C21_B16 PTxN-IB-N-A-11 Popul... 40 0.22
gb|DV463786.1|DV463786 MTUNUL1.P2.D08 NUL Populus fremontii... 40 0.22
gb|DV466483.1|DV466483 MTUNUL1.P6.C05 NUL Populus fremontii... 40 0.22
dbj|AB120627.1| Populus nigra PnLRK1 mRNA for leucine-rich ... 40 0.22
gb|CV264133.1|CV264133 WS02023.B21_L08 PTxN-IB-N-A-11 Popul... 38 0.85
gb|DN486119.1|DN486119 N070A10.3pR Populus bark cDNA librar... 38 0.85
gb|CK097195.1|CK097195 UB43DPB01.3pR Populus active cambium... 36 3.4
gb|CX179473.1|CX179473 F08_45-96_12.ab1 leaf inoculated wit... 36 3.4
gb|CX654892.1|CX654892 PO01002D12 Poplar SC cDNA library Po... 36 3.4
gb|DN483707.1|DN483707 PSO202C05 Populus tomentiglandulosa ... 36 3.4
>gb|CK091144.1|CK091144 F051P15.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F051P15 3', mRNA sequence
Length = 738
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 725 gatgtctacagcttcggcgtggtgcttctggagct 759
||||| ||||||||||| ||||||||||| |||||
Sbjct: 441 gatgtttacagcttcggtgtggtgcttctagagct 407
>gb|CN520791.1|CN520791 GQ0105.B3_I09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_I09 5', mRNA sequence
Length = 808
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 725 gatgtctacagcttcggcgtggtgcttctggagct 759
||||| ||||||||||| ||||||||||| |||||
Sbjct: 254 gatgtttacagcttcggtgtggtgcttctagagct 288
>gb|CV229178.1|CV229178 WS01912.B21_H11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01912_H11 3', mRNA sequence
Length = 594
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 725 gatgtctacagcttcggcgtggtgcttctggagct 759
||||| ||||||||||| ||||||||||| |||||
Sbjct: 573 gatgtttacagcttcggtgtggtgcttctagagct 539
>gb|CV259037.1|CV259037 WS02010.B21_D05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_D05 3', mRNA sequence
Length = 721
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 725 gatgtctacagcttcggcgtggtgcttctggagct 759
||||| ||||||||||| ||||||||||| |||||
Sbjct: 644 gatgtttacagcttcggtgtggtgcttctagagct 678
>gb|CV258010.1|CV258010 WS0248.B21_E12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_E12 3', mRNA sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 720 agtgcgatgtctacagcttcggcgtggt 747
||||||||||||||||||| || |||||
Sbjct: 158 agtgcgatgtctacagctttggagtggt 185
>gb|CV259454.1|CV259454 WS02011.B21_G12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_G12 3', mRNA sequence
Length = 763
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 495 aaagattcaacagaaatgga 514
>gb|CV274195.1|CV274195 WS0172.B21_I06 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_I06 3', mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 720 agtgcgatgtctacagcttcggcgtggt 747
||||||||||||||||||| || |||||
Sbjct: 137 agtgcgatgtctacagctttggagtggt 164
>gb|CV276627.1|CV276627 WS0141.B21_F14 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0141_F14 3', mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 495 aaagattcaacagaaatgga 514
>gb|CV279057.1|CV279057 WS0148.B21_E02 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0148_E02 3', mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 720 agtgcgatgtctacagcttcggcgtggt 747
||||||||||||||||||| || |||||
Sbjct: 519 agtgcgatgtctacagctttggagtggt 492
>gb|CX169630.1|CX169630 H07_69-106_15.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 467 aaagattcaacagaaatgga 448
>gb|CX170056.1|CX170056 F09_69-8_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 469 aaagattcaacagaaatgga 450
>gb|CX174960.1|CX174960 C04_69-1_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 408 aaagattcaacagaaatgga 389
>gb|CX177719.1|CX177719 E03_45-31_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 487 aaagattcaacagaaatgga 468
>gb|CX177850.1|CX177850 A08_45-72_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 465 aaagattcaacagaaatgga 446
>gb|CX178801.1|CX178801 D12_45-86_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 716
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 437 aaagattcaacagaaatgga 418
>gb|CX178911.1|CX178911 C09_45-83_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 471 aaagattcaacagaaatgga 452
>gb|CX180623.1|CX180623 G06_45-97_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 462 aaagattcaacagaaatgga 443
>gb|CX181685.1|CX181685 C11_45-89_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 461 aaagattcaacagaaatgga 442
>gb|CX182562.1|CX182562 A08_45-40_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 467 aaagattcaacagaaatgga 448
>gb|CX184648.1|CX184648 E05_45-121_09.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 485 aaagattcaacagaaatgga 466
>gb|CX186583.1|CX186583 E09_45-100_09.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 465 aaagattcaacagaaatgga 446
>gb|CX187053.1|CX187053 D01_45-35_07.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 74 aaagattcaacagaaatgga 55
>gb|DT502121.1|DT502121 WS01315.BR_K23 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01315_K23 5', mRNA sequence
Length = 885
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 429 aaagattcaacagaaatgga 410
>gb|DT524602.1|DT524602 WS02043.C21_B16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02043_B16 3', mRNA sequence
Length = 828
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 492 aaagattcaacagaaatgga 511
>gb|DV463786.1|DV463786 MTUNUL1.P2.D08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 456 aaagattcaacagaaatgga 437
>gb|DV466483.1|DV466483 MTUNUL1.P6.C05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 717
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aaagattcaacagaaatgga 43
||||||||||||||||||||
Sbjct: 386 aaagattcaacagaaatgga 367
>dbj|AB120627.1| Populus nigra PnLRK1 mRNA for leucine-rich repeat receptor-like
protein kinase 1, complete cds
Length = 2724
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 720 agtgcgatgtctacagcttcggcgtggt 747
||||||||||||||||||| || |||||
Sbjct: 2232 agtgcgatgtctacagctttggagtggt 2259
>gb|CV264133.1|CV264133 WS02023.B21_L08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_L08 3', mRNA sequence
Length = 849
Score = 38.2 bits (19), Expect = 0.85
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 720 agtgcgatgtctacagctt 738
|||||||||||||||||||
Sbjct: 136 agtgcgatgtctacagctt 154
>gb|DN486119.1|DN486119 N070A10.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N070A10 3', mRNA sequence
Length = 611
Score = 38.2 bits (19), Expect = 0.85
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 720 agtgcgatgtctacagctt 738
|||||||||||||||||||
Sbjct: 471 agtgcgatgtctacagctt 453
>gb|CK097195.1|CK097195 UB43DPB01.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB43DPB01 3', mRNA sequence
Length = 790
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 725 gatgtctacagcttcggcgtggtgct 750
|||||||||||||| || ||||||||
Sbjct: 659 gatgtctacagctttggagtggtgct 634
>gb|CX179473.1|CX179473 F08_45-96_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 709
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 568 caacatcctccttgacga 585
||||||||||||||||||
Sbjct: 80 caacatcctccttgacga 97
>gb|CX654892.1|CX654892 PO01002D12 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01002D12 5', mRNA sequence
Length = 687
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1210 acatgatttattcttcca 1227
||||||||||||||||||
Sbjct: 474 acatgatttattcttcca 457
>gb|DN483707.1|DN483707 PSO202C05 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1142
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 722 tgcgatgtctacagcttcggcgtggt 747
||||||||||| |||||||| |||||
Sbjct: 585 tgcgatgtctatagcttcggagtggt 610
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,769
Number of Sequences: 369679
Number of extensions: 152769
Number of successful extensions: 44529
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44486
Number of HSP's gapped (non-prelim): 43
length of query: 1348
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1329
effective length of database: 196,384,763
effective search space: 260995350027
effective search space used: 260995350027
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)