BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.392
(725 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI166668.1|AI166668 xylem.est.478 Poplar xylem Lambda ZA... 115 2e-024
gb|BI139398.1|BI139398 F130P86Y Populus flower cDNA library... 115 2e-024
gb|CV238503.1|CV238503 WS0126.B21_O13 PT-GT-FL-A-3 Populus ... 115 2e-024
gb|CV253243.1|CV253243 WS0221.B21_F05 PTxD-ICC-A-12 Populus... 115 2e-024
gb|DT510938.1|DT510938 WS02429.BR_B21 PTxD-ICC-N-A-14 Popul... 115 2e-024
gb|DT515639.1|DT515639 WS02429.B21.1_B21 PTxD-ICC-N-A-14 Po... 115 2e-024
gb|DV463383.1|DV463383 MTUNUL1.P15.C02 NUL Populus fremonti... 115 2e-024
gb|CA928297.1|CA928297 MTU6TR.P1.A01 Aspen root cDNA Librar... 109 1e-022
gb|BU882546.1|BU882546 UM79TC04 Populus flower cDNA library... 107 6e-022
gb|AJ776995.1|AJ776995 AJ776995 Populus euphratica root 3-6... 107 6e-022
gb|AJ778845.1|AJ778845 AJ778845 Populus euphratica cambium ... 107 6e-022
gb|CV237189.1|CV237189 WS01226.B21_K18 PT-GT-FL-A-3 Populus... 107 6e-022
gb|CV244815.1|CV244815 WS0255.B21_L05 PT-MB-N-A-15 Populus ... 107 6e-022
gb|DV462945.1|DV462945 MTUNUL1.P1.G01 NUL Populus fremontii... 107 6e-022
gb|CV261778.1|CV261778 WS02017.B21_L16 PTxN-IB-N-A-11 Popul... 101 4e-020
gb|CB240307.1|CB240307 PopSC00285 Poplar SC cDNA library Po... 100 1e-019
gb|CV233627.1|CV233627 WS01211.B21_M02 PT-GT-FL-A-3 Populus... 94 9e-018
gb|CK095579.1|CK095579 UA15CPA06.3pR Populus dormant cambiu... 92 3e-017
gb|CV271141.1|CV271141 WS0153.B21_O11 PTxN-IB-A-6 Populus t... 78 5e-013
gb|AJ774259.1|AJ774259 AJ774259 Populus euphratica shoot 3-... 72 3e-011
gb|BP932706.1|BP932706 BP932706 full-length enriched poplar... 66 2e-009
gb|BP933065.1|BP933065 BP933065 full-length enriched poplar... 60 1e-007
gb|CN518016.1|CN518016 GQ0092.B3_C12 GQ009 Populus trichoca... 56 2e-006
gb|BI138545.1|BI138545 F108P83Y Populus flower cDNA library... 52 3e-005
gb|AJ767259.1|AJ767259 AJ767259 Populus euphratica leaf adu... 52 3e-005
gb|CV235952.1|CV235952 WS01222.B21_D24 PT-GT-FL-A-3 Populus... 52 3e-005
gb|CV253869.1|CV253869 WS0223.B21_E15 PTxD-ICC-A-12 Populus... 52 3e-005
gb|CV266912.1|CV266912 WS02030.B21_F01 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|CV267536.1|CV267536 WS02032.B21_A06 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|CV268722.1|CV268722 WS0206.B21_E08 PTxN-IB-N-A-11 Populu... 52 3e-005
gb|CV272651.1|CV272651 WS0158.B21_E16 PTxN-IB-A-6 Populus t... 52 3e-005
gb|DT524098.1|DT524098 WS02041.C21.1_I17 PTxN-IB-N-A-11 Pop... 52 3e-005
gb|CA822515.1|CA822515 R09C04 two-month-old roots from clon... 48 5e-004
gb|AJ776021.1|AJ776021 AJ776021 Populus euphratica root 3-6... 42 0.029
gb|AI166964.1|AI166964 xylem.est.744 Poplar xylem Lambda ZA... 40 0.11
gb|BI139333.1|BI139333 F129P50Y Populus flower cDNA library... 40 0.11
gb|BU813829.1|BU813829 N015E09 Populus bark cDNA library Po... 40 0.11
gb|BU831356.1|BU831356 T020E10 Populus apical shoot cDNA li... 40 0.11
gb|BU837955.1|BU837955 T107G11 Populus apical shoot cDNA li... 40 0.11
gb|CK090619.1|CK090619 F017P02.3pR Populus flower cDNA libr... 40 0.11
gb|CK093603.1|CK093603 G125P53.3pR Populus tension wood cDN... 40 0.11
gb|CK100090.1|CK100090 B008P57.5pR Hybrid aspen plasmid lib... 40 0.11
gb|CV230818.1|CV230818 WS0192.B21_L13 PT-DX-N-A-10 Populus ... 40 0.11
gb|CV242782.1|CV242782 WS02516.B21.1_A08 PT-MB-N-A-15 Popul... 40 0.11
gb|CV245353.1|CV245353 WS0257.B21_C24 PT-MB-N-A-15 Populus ... 40 0.11
gb|CV257385.1|CV257385 WS0246.B21_I09 PTxD-ICC-N-A-14 Popul... 40 0.11
gb|CX170366.1|CX170366 E07_69-11_09.ab1 leaf inoculated wit... 40 0.11
gb|DT479260.1|DT479260 WS02525.BR_E01 PT-MB-N-A-15 Populus ... 40 0.11
gb|DT488765.1|DT488765 WS02537.B21_F18 PT-MB-N-A-15 Populus... 40 0.11
gb|DT519707.1|DT519707 WS02443.B21_H01 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|DT520726.1|DT520726 WS02448.B21_F23 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|DT520908.1|DT520908 WS02448.B21_O04 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|BI126706.1|BI126706 I079P15P Populus leaf cDNA library P... 38 0.45
gb|BI130952.1|BI130952 G113P17Y Populus cambium cDNA librar... 38 0.45
gb|BU828383.1|BU828383 K022P12P Populus apical shoot cDNA l... 38 0.45
gb|CF234493.1|CF234493 Ptajxojxo3D7D0707 Poplar cDNA librar... 38 0.45
gb|CK093247.1|CK093247 G113P17.3pR Populus tension wood cDN... 38 0.45
gb|CK096651.1|CK096651 UB22CPA07.3pR Populus active cambium... 38 0.45
gb|CK097072.1|CK097072 UB37DPH04.3pR Populus active cambium... 38 0.45
gb|CV274519.1|CV274519 WS0173.B21_I14 PTxD-NR-A-8 Populus t... 38 0.45
gb|DT486326.1|DT486326 WS02530.B21_K17 PT-MB-N-A-15 Populus... 38 0.45
gb|DT520654.1|DT520654 WS02448.B21_C17 PTxD-ICC-N-A-14 Popu... 38 0.45
>gb|AI166668.1|AI166668 xylem.est.478 Poplar xylem Lambda ZAPII library Populus
trichocarpa cDNA 5', mRNA sequence
Length = 567
Score = 115 bits (58), Expect = 2e-024
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 15 aaagaaaattaagaaccccaactaccagggcaaatggaaggcaccaattattgacaaccc 74
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 75 agatttcaaggatgatcc 92
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 125 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 170
>gb|BI139398.1|BI139398 F130P86Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 541
Score = 115 bits (58), Expect = 2e-024
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 189 aaagaaaattaagaaccccaactaccagggcaaatggaaggcaccaattattgacaaccc 248
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 249 agatttcaaggatgatcc 266
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 299 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 344
>gb|CV238503.1|CV238503 WS0126.B21_O13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_O13 3', mRNA sequence
Length = 594
Score = 115 bits (58), Expect = 2e-024
Identities = 73/78 (93%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 267 aaagaaaattaagaaccccaactaccagggcaaatggaaggcaccaattattgacaaccc 208
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 207 agatttcaaggatgatcc 190
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 157 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 112
>gb|CV253243.1|CV253243 WS0221.B21_F05 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_F05 3', mRNA sequence
Length = 715
Score = 115 bits (58), Expect = 2e-024
Identities = 73/78 (93%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 658 aaagaaaattaagaaccccaactaccagggcaaatggaaggcaccaattattgacaaccc 599
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 598 agatttcaaggatgatcc 581
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 548 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 503
>gb|DT510938.1|DT510938 WS02429.BR_B21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_B21 5', mRNA sequence
Length = 834
Score = 115 bits (58), Expect = 2e-024
Identities = 73/78 (93%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 653 aaagaaaattaagaaccccaactaccagggcaaatggaaggcaccaattattgacaaccc 594
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 593 agatttcaaggatgatcc 576
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 543 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 498
>gb|DT515639.1|DT515639 WS02429.B21.1_B21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_B21 3', mRNA sequence
Length = 799
Score = 115 bits (58), Expect = 2e-024
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 147 aaagaaaattaagaaccccaactaccagggcaaatggaaggcaccaattattgacaaccc 206
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 207 agatttcaaggatgatcc 224
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 257 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 302
>gb|DV463383.1|DV463383 MTUNUL1.P15.C02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 853
Score = 115 bits (58), Expect = 2e-024
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 683 aaagaaaattaagaaccccaactaccagggcaaatggaaggcaccaattattgacaaccc 742
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 743 agatttcaaggatgatcc 760
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 793 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 838
>gb|CA928297.1|CA928297 MTU6TR.P1.A01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 414
Score = 109 bits (55), Expect = 1e-022
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 397 aaagaaaattaagaaccccaactaccagggcaagtggaaggcaccaaagattgacaaccc 338
Query: 68 agatttcaaggatgatccg 86
|||||||||||||||||||
Sbjct: 337 agatttcaaggatgatccg 319
>gb|BU882546.1|BU882546 UM79TC04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 478
Score = 107 bits (54), Expect = 6e-022
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| || ||||||||||| || |||||||||||
Sbjct: 64 aaagaaaatgaagaaccccaactaccagggcaagtggaaggcaccaattattgacaaccc 123
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 124 agatttcaaggatgatcc 141
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 174 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 219
>gb|AJ776995.1|AJ776995 AJ776995 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400021D12F1, mRNA sequence
Length = 712
Score = 107 bits (54), Expect = 6e-022
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 404 aaagaaaattaagaaccccaactaccagggcaagtggaaggcaccaaagattgacaaccc 463
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 464 agatttcaaggatgatcc 481
>gb|AJ778845.1|AJ778845 AJ778845 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600007B11F1, mRNA sequence
Length = 747
Score = 107 bits (54), Expect = 6e-022
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||||
Sbjct: 268 aaagaaaattaagaaccccaactaccagggcaaatggaaagcaccaattattgacaaccc 327
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 328 agatttcaaggatgatcc 345
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 378 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 423
>gb|CV237189.1|CV237189 WS01226.B21_K18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_K18 3', mRNA sequence
Length = 872
Score = 107 bits (54), Expect = 6e-022
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| || ||||||||||| || |||||||||||
Sbjct: 654 aaagaaaattaagaaccccaactaccagggcaagtggaaggcaccaattattgacaaccc 595
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 594 agatttcaaggatgatcc 577
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 544 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 499
>gb|CV244815.1|CV244815 WS0255.B21_L05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0255_L05 3', mRNA sequence
Length = 933
Score = 107 bits (54), Expect = 6e-022
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| || ||||||||||| || |||||||||||
Sbjct: 266 aaagaaaattaagaaccccaactaccagggcaagtggaaggcaccaattattgacaaccc 207
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 206 agatttcaaggatgatcc 189
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 156 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 111
>gb|DV462945.1|DV462945 MTUNUL1.P1.G01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 650
Score = 107 bits (54), Expect = 6e-022
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 161 aaagaaaattaagaaccccaactaccagggcaagtggaaggcaccaaagattgacaaccc 220
Query: 68 agatttcaaggatgatcc 85
||||||||||||||||||
Sbjct: 221 agatttcaaggatgatcc 238
>gb|CV261778.1|CV261778 WS02017.B21_L16 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02017_L16 3', mRNA sequence
Length = 655
Score = 101 bits (51), Expect = 4e-020
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 11 gaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccaga 70
|||||| |||||||| ||||||||||| | |||||||||||| || ||||||||||||||
Sbjct: 1 gaaaattaagaaccccaactaccagggcacatggaaggcaccaattattgacaacccaga 60
Query: 71 tttcaaggatgatcc 85
|||||||||||||||
Sbjct: 61 tttcaaggatgatcc 75
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 108 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 153
>gb|CB240307.1|CB240307 PopSC00285 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00285, mRNA sequence
Length = 364
Score = 99.6 bits (50), Expect = 1e-019
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 153 aaagaaaattaagaaccccaactaccagggcaagtggaaggcaccaaagattgacaaccc 212
Query: 68 agatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 213 ggatttcaaggatgatcc 230
>gb|CV233627.1|CV233627 WS01211.B21_M02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_M02 3', mRNA sequence
Length = 680
Score = 93.7 bits (47), Expect = 9e-018
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaa-tggaaggcacctatgattgacaacc 66
||||||||| |||||||| ||||||||||| || ||||||||||| || ||||||||||
Sbjct: 665 aaagaaaattaagaaccccaactaccaggggcaagtggaaggcaccaattattgacaacc 606
Query: 67 cagatttcaaggatgatcc 85
|||||||||||||||||||
Sbjct: 605 cagatttcaaggatgatcc 587
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 554 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 509
>gb|CK095579.1|CK095579 UA15CPA06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA15CPA06 3', mRNA sequence
Length = 820
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| || |||||||| || ||||||||||| | ||||||||||||
Sbjct: 557 aaagaaaattaagaaccccaattaccagggcaagtggaaggcaccaaagattgacaaccc 498
Query: 68 agatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 497 ggatttcaaggatgatcc 480
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 113 atacattggcattgagctgtggcaggttaaatcaggcactttgtttga 160
|||| |||||||||| |||||||||| ||||| || |||||||||||
Sbjct: 452 atacgttggcattgaattgtggcaggtgaaatctggaactttgtttga 405
>gb|CV271141.1|CV271141 WS0153.B21_O11 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_O11 3', mRNA sequence
Length = 634
Score = 77.8 bits (39), Expect = 5e-013
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 39 aaatggaaggcacctatgattgacaacccagatttcaaggatgatcc 85
|||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 630 aaatggaaggcaccaattattgacaacccagatttcaaggatgatcc 584
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 551 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 506
>gb|AJ774259.1|AJ774259 AJ774259 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300014H02F1, mRNA sequence
Length = 412
Score = 71.9 bits (36), Expect = 3e-011
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||||
Sbjct: 353 aaagaaaattaagaaccccaactaccagggcaaatggaaagcaccaattattgacaaccc 412
>gb|BP932706.1|BP932706 BP932706 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-039_M18.r 3', mRNA sequence
Length = 657
Score = 65.9 bits (33), Expect = 2e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 33 cagggtaaatggaaggcacctatgattgacaacccagatttcaaggatgatcc 85
||||| || ||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 657 cagggcaagtggaaggcaccaaagatggacaacccagatttcaaggatgatcc 605
>gb|BP933065.1|BP933065 BP933065 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-046_E16.r 3', mRNA sequence
Length = 588
Score = 60.0 bits (30), Expect = 1e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 56 gattgacaacccagatttcaaggatgatcc 85
||||||||||||||||||||||||||||||
Sbjct: 582 gattgacaacccagatttcaaggatgatcc 553
>gb|CN518016.1|CN518016 GQ0092.B3_C12 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_C12 5', mRNA sequence
Length = 595
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaag 47
|||||||||||||||||||||||| |||| |||||||||
Sbjct: 297 aaagaaaatcaagaaccctaactataagggaaaatggaag 336
>gb|BI138545.1|BI138545 F108P83Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 503
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 17 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 62
>gb|AJ767259.1|AJ767259 AJ767259 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100003G03F1, mRNA sequence
Length = 599
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 51 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 96
>gb|CV235952.1|CV235952 WS01222.B21_D24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01222_D24 3', mRNA sequence
Length = 746
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 702 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 657
>gb|CV253869.1|CV253869 WS0223.B21_E15 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_E15 3', mRNA sequence
Length = 721
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 708 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 663
>gb|CV266912.1|CV266912 WS02030.B21_F01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02030_F01 3', mRNA sequence
Length = 872
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 697 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 742
>gb|CV267536.1|CV267536 WS02032.B21_A06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_A06 3', mRNA sequence
Length = 659
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 627 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 582
>gb|CV268722.1|CV268722 WS0206.B21_E08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0206_E08 3', mRNA sequence
Length = 848
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 344 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 389
>gb|CV272651.1|CV272651 WS0158.B21_E16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0158_E16 3', mRNA sequence
Length = 764
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 735 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 690
>gb|DT524098.1|DT524098 WS02041.C21.1_I17 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02041_I17 3', mRNA sequence
Length = 920
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 118 ttggcattgagctgtggcaggttaaatcaggcactttgtttgacaa 163
||||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 696 ttggcattgagttgtggcaggtgaaatctggaaccttgtttgacaa 741
>gb|CA822515.1|CA822515 R09C04 two-month-old roots from clone 'Beaupre' Populus
trichocarpa x Populus deltoides cDNA 5', mRNA sequence
Length = 305
Score = 48.1 bits (24), Expect = 5e-004
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 attgacaacccagatttcaaggatgatccg 86
|||||||||||||| ||||||| |||||||
Sbjct: 22 attgacaacccaganttcaaggntgatccg 51
>gb|AJ776021.1|AJ776021 AJ776021 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400008C03F1, mRNA sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.029
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agaaaaagaaggaagaagaggaagc 286
|||| ||||||||||||||||||||
Sbjct: 2 agaagaagaaggaagaagaggaagc 26
>gb|AI166964.1|AI166964 xylem.est.744 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaacta 31
|||||||||||||||||| |||||
Sbjct: 117 aaagaaaatcaagaaccccaacta 140
>gb|BI139333.1|BI139333 F129P50Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 551
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaacta 31
|||||||||||||||||| |||||
Sbjct: 340 aaagaaaatcaagaaccccaacta 363
>gb|BU813829.1|BU813829 N015E09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 418 gagaacaaaagaaaatcaag 399
>gb|BU831356.1|BU831356 T020E10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 247
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 228 gagaacaaaagaaaatcaag 209
>gb|BU837955.1|BU837955 T107G11 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 471
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 455 gagaacaaaagaaaatcaag 436
>gb|CK090619.1|CK090619 F017P02.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F017P02 3', mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 33 gagaacaaaagaaaatcaag 52
>gb|CK093603.1|CK093603 G125P53.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G125P53 3', mRNA
sequence
Length = 806
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 39 gagaacaaaagaaaatcaag 58
>gb|CK100090.1|CK100090 B008P57.5pR Hybrid aspen plasmid library Populus tremula x
Populus tremuloides cDNA clone B008P57 5', mRNA
sequence
Length = 354
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaacta 31
|||||||||||||||||| |||||
Sbjct: 6 aaagaaaatcaagaaccccaacta 29
>gb|CV230818.1|CV230818 WS0192.B21_L13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0192_L13 3', mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 114 gagaacaaaagaaaatcaag 133
>gb|CV242782.1|CV242782 WS02516.B21.1_A08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02516_A08 3', mRNA sequence
Length = 902
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 79 gagaacaaaagaaaatcaag 98
>gb|CV245353.1|CV245353 WS0257.B21_C24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_C24 3', mRNA sequence
Length = 901
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 78 gagaacaaaagaaaatcaag 97
>gb|CV257385.1|CV257385 WS0246.B21_I09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_I09 3', mRNA sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 157 gagaacaaaagaaaatcaag 176
>gb|CX170366.1|CX170366 E07_69-11_09.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 80 gagaacaaaagaaaatcaag 99
>gb|DT479260.1|DT479260 WS02525.BR_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_E01 5', mRNA sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 554 gagaacaaaagaaaatcaag 535
>gb|DT488765.1|DT488765 WS02537.B21_F18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_F18 3', mRNA sequence
Length = 911
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 23 gagaacaaaagaaaatcaag 42
>gb|DT519707.1|DT519707 WS02443.B21_H01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02443_H01 3', mRNA sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gagaacaaaagaaaatcaag 20
||||||||||||||||||||
Sbjct: 23 gagaacaaaagaaaatcaag 42
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,361
Number of Sequences: 369679
Number of extensions: 129361
Number of successful extensions: 40143
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40025
Number of HSP's gapped (non-prelim): 117
length of query: 725
length of database: 203,408,664
effective HSP length: 19
effective length of query: 706
effective length of database: 196,384,763
effective search space: 138647642678
effective search space used: 138647642678
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)