BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Y13733
(1516 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN785837.1|CN785837 EST784528 Sequencing ESTs from loblo... 46 0.004
gb|DN451977.1|DN451977 EST947776 Sequencing ESTs from loblo... 46 0.004
gb|DN460355.1|DN460355 EST956154 Sequencing ESTs from loblo... 46 0.004
gb|DN462023.1|DN462023 EST957822 Sequencing ESTs from loblo... 46 0.004
gb|DT626847.1|DT626847 EST1159923 Sequencing ESTs from lobl... 46 0.004
gb|CX650661.1|CX650661 COLD1_47_F01.b1_A029 Root cold Pinus... 42 0.066
gb|BM158723.1|BM158723 NXLV_039_D03_F NXLV (Nsf Xylem Late ... 40 0.26
gb|CF664280.1|CF664280 RTCNT1_8_F09.g1_A029 Root control Pi... 40 0.26
gb|CN785454.1|CN785454 EST784145 Sequencing ESTs from loblo... 40 0.26
gb|DR742708.1|DR742708 RTCU1_6_B04.g2_A029 Roots plus added... 40 0.26
gb|U62394.1|PRU62394 Pinus radiata cinnamyl alcohol dehydro... 40 0.26
gb|AF060491.1|AF060491 Pinus radiata cinnamyl alcohol dehyd... 40 0.26
dbj|BD224283.1| Materials and methods for the modification ... 40 0.26
dbj|BD224347.1| Materials and methods for the modification ... 40 0.26
dbj|BD224371.1| Materials and methods for the modification ... 40 0.26
dbj|BD224569.1| Materials and methods for the modification ... 40 0.26
dbj|BD273009.1| Materials and methods for the modification ... 40 0.26
gb|AW290193.1|AW290193 NXNV015G12F Nsf Xylem Normal wood Ve... 38 1.0
gb|BE187172.1|BE187172 NXNV_160_B03_F Nsf Xylem Normal wood... 38 1.0
gb|BM133370.1|BM133370 NXLV_005_B08_F NXLV (Nsf Xylem Late ... 38 1.0
gb|BM367426.1|BM367426 NXLV_049_A09_F NXLV (Nsf Xylem Late ... 38 1.0
gb|BQ107252.1|BQ107252 NXLV090_A11_F NXLV (Nsf Xylem Late w... 38 1.0
gb|BQ197872.1|BQ197872 NXLV121_G06_F NXLV (Nsf Xylem Late w... 38 1.0
gb|CD026883.1|CD026883 NXNV015G12 Nsf Xylem Normal wood Ver... 38 1.0
gb|CF389666.1|CF389666 RTDR2_8_A12.g1_A021 Loblolly pine ro... 38 1.0
gb|CF397289.1|CF397289 RTDS3_2_F04.g1_A022 Drought-stressed... 38 1.0
gb|CF400598.1|CF400598 RTWW1_6_G10.g1_A015 Well-watered lob... 38 1.0
gb|CF470606.1|CF470606 RTDS1_13_H02.g1_A015 Drought-stresse... 38 1.0
gb|CO366244.1|CO366244 RTK1_26_E10.g1_A029 Roots minus pota... 38 1.0
gb|CV138996.1|CV138996 EST850205 Sequencing ESTs from loblo... 38 1.0
gb|CX648629.1|CX648629 COLD1_29_H04.g1_A029 Root cold Pinus... 38 1.0
gb|DN445200.1|DN445200 EST940999 Sequencing ESTs from loblo... 38 1.0
gb|DR012895.1|DR012895 HEAT1_15_E03.g1_A029 Root at 37 C fo... 38 1.0
gb|DR012925.1|DR012925 HEAT1_15_H07.g1_A029 Root at 37 C fo... 38 1.0
gb|DR017077.1|DR017077 STRS1_14_A03.b1_A034 Shoot tip pitch... 38 1.0
gb|DR017338.1|DR017338 STRS1_15_D09.g1_A034 Shoot tip pitch... 38 1.0
gb|DR024369.1|DR024369 STRS1_64_B12.g1_A034 Shoot tip pitch... 38 1.0
gb|DR069040.1|DR069040 RTDK1_4_A12.g1_A029 Roots, dark Pinu... 38 1.0
gb|DR071816.1|DR071816 RTDK1_22_F08.b1_A029 Roots, dark Pin... 38 1.0
gb|DR071898.1|DR071898 RTDK1_22_F08.g1_A029 Roots, dark Pin... 38 1.0
gb|DR089581.1|DR089581 RTAL1_9_C10.g1_A029 Roots plus added... 38 1.0
gb|DR102003.1|DR102003 STRR1_77_A01.g1_A033 Stem Response R... 38 1.0
gb|DR109518.1|DR109518 RTS1_2_F09.g1_A029 Roots minus sulfu... 38 1.0
gb|DR118287.1|DR118287 RTMG1_12_G12.b1_A029 Roots minus mag... 38 1.0
gb|DR118369.1|DR118369 RTMG1_12_G12.g1_A029 Roots minus mag... 38 1.0
gb|DR684394.1|DR684394 EST1074471 Normalized pine embryo li... 38 1.0
gb|DT626331.1|DT626331 EST1158255 Sequencing ESTs from lobl... 38 1.0
gb|DT624326.1|DT624326 EST1158601 Sequencing ESTs from lobl... 38 1.0
gb|DT632281.1|DT632281 EST1147212 Normalized pine embryo li... 38 1.0
gb|DT638531.1|DT638531 EST1153462 Normalized pine embryo li... 38 1.0
emb|CR377665.1| Pinus pinaster SSR, clone PPA4B06r 38 1.0
gb|CF385712.1|CF385712 RTDR1_5_B10.g1_A015 Loblolly pine ro... 36 4.1
gb|CO366156.1|CO366156 RTK1_26_E10.b1_A029 Roots minus pota... 36 4.1
gb|DR014569.1|DR014569 HEAT1_50_G02.b1_A029 Root at 37 C fo... 36 4.1
gb|DR014656.1|DR014656 HEAT1_50_G02.g1_A029 Root at 37 C fo... 36 4.1
gb|DR163199.1|DR163199 RTFE1_41_B08.g1_A029 Roots minus iro... 36 4.1
>gb|CN785837.1|CN785837 EST784528 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone PIAB416 5' end, mRNA sequence
Length = 860
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||||||||||||||||||||||
Sbjct: 437 gaggcggaggcggcggcggcgga 459
>gb|DN451977.1|DN451977 EST947776 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIF992 5' end, mRNA sequence
Length = 827
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||||||||||||||||||||||
Sbjct: 437 gaggcggaggcggcggcggcgga 459
>gb|DN460355.1|DN460355 EST956154 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIHX56 5' end, mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||||||||||||||||||||||
Sbjct: 247 gaggcggaggcggcggcggcgga 269
>gb|DN462023.1|DN462023 EST957822 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIIH44 5' end, mRNA sequence
Length = 942
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||||||||||||||||||||||
Sbjct: 437 gaggcggaggcggcggcggcgga 459
>gb|DT626847.1|DT626847 EST1159923 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAS06 5' end, mRNA sequence
Length = 968
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||||||||||||||||||||||
Sbjct: 437 gaggcggaggcggcggcggcgga 459
>gb|CX650661.1|CX650661 COLD1_47_F01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_F01_A029 3', mRNA sequence
Length = 792
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1308 ttctgcttcctttactagttg 1328
|||||||||||||||||||||
Sbjct: 484 ttctgcttcctttactagttg 504
>gb|BM158723.1|BM158723 NXLV_039_D03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_039_D03 5' similar to Arabidopsis thaliana
sequence At3g19450 putative cinnamyl alcohol
dehydrogenase 2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 484
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 218 aacacaggccctgaagatgtggtg 241
|||||| |||||||||||||||||
Sbjct: 84 aacacaagccctgaagatgtggtg 107
>gb|CF664280.1|CF664280 RTCNT1_8_F09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_8_F09_A029 5', mRNA sequence
Length = 434
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcgg 1214
||||||||||||||||||||
Sbjct: 138 ggcggaggcggcggcggcgg 119
Score = 36.2 bits (18), Expect = 4.1
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcggatgcgg 1220
||||| ||||||||||||||| ||||
Sbjct: 63 ggcggcggcggcggcggcggaggcgg 38
>gb|CN785454.1|CN785454 EST784145 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone PIAAZ18 5' end, mRNA sequence
Length = 946
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggc 1212
||||||||||||||||||||
Sbjct: 309 gaggcggaggcggcggcggc 290
>gb|DR742708.1|DR742708 RTCU1_6_B04.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_6_B04_A029 5', mRNA sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcgg 1214
||||||||||||||||||||
Sbjct: 265 ggcggaggcggcggcggcgg 246
Score = 36.2 bits (18), Expect = 4.1
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcggatgcgg 1220
||||| ||||||||||||||| ||||
Sbjct: 190 ggcggcggcggcggcggcggaggcgg 165
>gb|U62394.1|PRU62394 Pinus radiata cinnamyl alcohol dehydrogenase (CAD) mRNA, complete
cds
Length = 1397
Score = 40.1 bits (20), Expect = 0.26
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 698 ggcgtgggccacatgggcgtgaaggtagccaaggccatgggccaccacgtgacggtgatc 757
|||||||| |||||||| || ||| | ||||| ||| | || | |||||||||||| |||
Sbjct: 653 ggcgtggggcacatgggtgtcaagattgccaaagcctttggactccacgtgacggttatc 712
Query: 758 agctcgtc 765
|| |||||
Sbjct: 713 agttcgtc 720
>gb|AF060491.1|AF060491 Pinus radiata cinnamyl alcohol dehydrogenase (CAD) gene, complete cds
Length = 3540
Score = 40.1 bits (20), Expect = 0.26
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 698 ggcgtgggccacatgggcgtgaaggtagccaaggccatgggccaccacgtgacggtgatc 757
|||||||| |||||||| || ||| | ||||| ||| | || | |||||||||||| |||
Sbjct: 1271 ggcgtggggcacatgggtgtcaagattgccaaagcctttggactccacgtgacggttatc 1330
Query: 758 agctcgtc 765
|| |||||
Sbjct: 1331 agttcgtc 1338
>dbj|BD224283.1| Materials and methods for the modification of plant lignin content
Length = 1454
Score = 40.1 bits (20), Expect = 0.26
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 698 ggcgtgggccacatgggcgtgaaggtagccaaggccatgggccaccacgtgacggtgatc 757
|||||||| |||||||| || ||| | ||||| ||| | || | |||||||||||| |||
Sbjct: 649 ggcgtggggcacatgggtgtcaagattgccaaagcctttggactccacgtgacggttatc 708
Query: 758 agctcgtc 765
|| |||||
Sbjct: 709 agttcgtc 716
>dbj|BD224347.1| Materials and methods for the modification of plant lignin content
Length = 1474
Score = 40.1 bits (20), Expect = 0.26
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 698 ggcgtgggccacatgggcgtgaaggtagccaaggccatgggccaccacgtgacggtgatc 757
|||||||| |||||||| || ||| | ||||| ||| | || | |||||||||||| |||
Sbjct: 669 ggcgtggggcacatgggtgtcaagattgccaaagcctttggactccacgtgacggttatc 728
Query: 758 agctcgtc 765
|| |||||
Sbjct: 729 agttcgtc 736
>dbj|BD224371.1| Materials and methods for the modification of plant lignin content
Length = 1460
Score = 40.1 bits (20), Expect = 0.26
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 698 ggcgtgggccacatgggcgtgaaggtagccaaggccatgggccaccacgtgacggtgatc 757
|||||||| |||||||| || ||| | ||||| ||| | || | |||||||||||| |||
Sbjct: 655 ggcgtggggcacatgggtgtcaagattgccaaagcctttggactccacgtgacggttatc 714
Query: 758 agctcgtc 765
|| |||||
Sbjct: 715 agttcgtc 722
>dbj|BD224569.1| Materials and methods for the modification of plant lignin content
Length = 1474
Score = 40.1 bits (20), Expect = 0.26
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 698 ggcgtgggccacatgggcgtgaaggtagccaaggccatgggccaccacgtgacggtgatc 757
|||||||| |||||||| || ||| | ||||| ||| | || | |||||||||||| |||
Sbjct: 669 ggcgtggggcacatgggtgtcaagattgccaaagcctttggactccacgtgacggttatc 728
Query: 758 agctcgtc 765
|| |||||
Sbjct: 729 agttcgtc 736
>dbj|BD273009.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 1474
Score = 40.1 bits (20), Expect = 0.26
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 698 ggcgtgggccacatgggcgtgaaggtagccaaggccatgggccaccacgtgacggtgatc 757
|||||||| |||||||| || ||| | ||||| ||| | || | |||||||||||| |||
Sbjct: 669 ggcgtggggcacatgggtgtcaagattgccaaagcctttggactccacgtgacggttatc 728
Query: 758 agctcgtc 765
|| |||||
Sbjct: 729 agttcgtc 736
>gb|AW290193.1|AW290193 NXNV015G12F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015G12 5', mRNA sequence
Length = 242
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 76 cgagggggaggcggcggcggcgg 54
>gb|BE187172.1|BE187172 NXNV_160_B03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_160_B03 5', mRNA sequence
Length = 221
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 55 cgagggggaggcggcggcggcgg 33
>gb|BM133370.1|BM133370 NXLV_005_B08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_005_B08 5', mRNA sequence
Length = 204
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 139 cgagggggaggcggcggcggcgg 117
>gb|BM367426.1|BM367426 NXLV_049_A09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_049_A09 5', mRNA sequence
Length = 429
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 115 cgagggggaggcggcggcggcgg 93
>gb|BQ107252.1|BQ107252 NXLV090_A11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV090_A11 5', mRNA sequence
Length = 388
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 80 cgagggggaggcggcggcggcgg 58
>gb|BQ197872.1|BQ197872 NXLV121_G06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV121_G06 5', mRNA sequence
Length = 527
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 366 cgagggggaggcggcggcggcgg 344
>gb|CD026883.1|CD026883 NXNV015G12 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015G12 5', mRNA sequence
Length = 242
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 76 cgagggggaggcggcggcggcgg 54
>gb|CF389666.1|CF389666 RTDR2_8_A12.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_A12_A021 5', mRNA sequence
Length = 716
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 491 cgagggggaggcggcggcggcgg 469
>gb|CF397289.1|CF397289 RTDS3_2_F04.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_F04_A022 5', mRNA sequence
Length = 779
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 472 cgagggggaggcggcggcggcgg 450
>gb|CF400598.1|CF400598 RTWW1_6_G10.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_6_G10_A015 5', mRNA sequence
Length = 782
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 487 cgagggggaggcggcggcggcgg 465
>gb|CF470606.1|CF470606 RTDS1_13_H02.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_H02_A015 5', mRNA sequence
Length = 722
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 507 cgagggggaggcggcggcggcgg 485
>gb|CO366244.1|CO366244 RTK1_26_E10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_E10_A029 5', mRNA sequence
Length = 765
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 509 cgagggggaggcggcggcggcgg 487
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgg 1214
||||||| ||||||||||||||
Sbjct: 502 gaggcggcggcggcggcggcgg 481
>gb|CV138996.1|CV138996 EST850205 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIB979 5' end, mRNA sequence
Length = 751
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 220 ggcggaggcggcggcggcg 202
>gb|CX648629.1|CX648629 COLD1_29_H04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_H04_A029 5', mRNA sequence
Length = 822
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 522 cgagggggaggcggcggcggcgg 500
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgg 1214
||||||| ||||||||||||||
Sbjct: 515 gaggcggcggcggcggcggcgg 494
>gb|DN445200.1|DN445200 EST940999 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone PICUX74 5' end, mRNA sequence
Length = 748
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 218 ggcggaggcggcggcggcg 200
>gb|DR012895.1|DR012895 HEAT1_15_E03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_E03_A029 5', mRNA sequence
Length = 653
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgga 1215
||||||||||||| |||||||||
Sbjct: 610 gaggcggaggcggaggcggcgga 588
>gb|DR012925.1|DR012925 HEAT1_15_H07.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_H07_A029 5', mRNA sequence
Length = 590
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 516 cgagggggaggcggcggcggcgg 494
>gb|DR017077.1|DR017077 STRS1_14_A03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_A03_A034 3', mRNA sequence
Length = 703
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 153 cgagggggaggcggcggcggcgg 175
>gb|DR017338.1|DR017338 STRS1_15_D09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_15_D09_A034 5', mRNA sequence
Length = 632
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 467 cgagggggaggcggcggcggcgg 445
>gb|DR024369.1|DR024369 STRS1_64_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_64_B12_A034 5', mRNA sequence
Length = 860
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 502 cgagggggaggcggcggcggcgg 480
>gb|DR069040.1|DR069040 RTDK1_4_A12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_4_A12_A029 5', mRNA sequence
Length = 717
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 474 cgagggggaggcggcggcggcgg 452
>gb|DR071816.1|DR071816 RTDK1_22_F08.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_F08_A029 3', mRNA sequence
Length = 712
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 396 cgagggggaggcggcggcggcgg 374
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgg 1214
||||||| ||||||||||||||
Sbjct: 389 gaggcggcggcggcggcggcgg 368
>gb|DR071898.1|DR071898 RTDK1_22_F08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_F08_A029 5', mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 473 cgagggggaggcggcggcggcgg 451
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgg 1214
||||||| ||||||||||||||
Sbjct: 466 gaggcggcggcggcggcggcgg 445
>gb|DR089581.1|DR089581 RTAL1_9_C10.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_9_C10_A029 5', mRNA sequence
Length = 671
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgga 1215
||||||||||||| |||||||||
Sbjct: 655 gaggcggaggcggaggcggcgga 633
>gb|DR102003.1|DR102003 STRR1_77_A01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_77_A01_A033 5', mRNA sequence
Length = 612
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 465 cgagggggaggcggcggcggcgg 443
>gb|DR109518.1|DR109518 RTS1_2_F09.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_2_F09_A029 5', mRNA sequence
Length = 771
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 481 cgagggggaggcggcggcggcgg 459
>gb|DR118287.1|DR118287 RTMG1_12_G12.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_12_G12_A029 3', mRNA sequence
Length = 738
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 422 cgagggggaggcggcggcggcgg 400
>gb|DR118369.1|DR118369 RTMG1_12_G12.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_12_G12_A029 5', mRNA sequence
Length = 632
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1192 cgaggcggaggcggcggcggcgg 1214
||||| |||||||||||||||||
Sbjct: 487 cgagggggaggcggcggcggcgg 465
>gb|DR684394.1|DR684394 EST1074471 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAS16 3' end, mRNA sequence
Length = 871
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 167 tgaagatgtggtggtgaag 149
>gb|DT626331.1|DT626331 EST1158255 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA962 5' end, mRNA sequence
Length = 713
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 182 ggcggaggcggcggcggcg 164
>gb|DT624326.1|DT624326 EST1158601 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAD42 5' end, mRNA sequence
Length = 751
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 220 ggcggaggcggcggcggcg 202
>gb|DT632281.1|DT632281 EST1147212 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFI37 3' end, mRNA sequence
Length = 831
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 175 tgaagatgtggtggtgaag 157
>gb|DT638531.1|DT638531 EST1153462 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHG29 3' end, mRNA sequence
Length = 840
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 834 cggccatggcggcggccgc 852
|||||||||||||||||||
Sbjct: 825 cggccatggcggcggccgc 807
>emb|CR377665.1| Pinus pinaster SSR, clone PPA4B06r
Length = 475
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 58 ggcggaggcggcggcggcg 40
>gb|CF385712.1|CF385712 RTDR1_5_B10.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_5_B10_A015 5', mRNA sequence
Length = 740
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1201 ggcggcggcggcggatgcggcc 1222
||||||||||||||||| ||||
Sbjct: 185 ggcggcggcggcggatgaggcc 164
>gb|CO366156.1|CO366156 RTK1_26_E10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_E10_A029 3', mRNA sequence
Length = 826
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgg 1214
||||||| ||||||||||||||
Sbjct: 500 gaggcggcggcggcggcggcgg 479
>gb|DR014569.1|DR014569 HEAT1_50_G02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_G02_A029 3', mRNA sequence
Length = 876
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgg 1214
||||||| ||||||||||||||
Sbjct: 420 gaggcgggggcggcggcggcgg 399
>gb|DR014656.1|DR014656 HEAT1_50_G02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_G02_A029 5', mRNA sequence
Length = 892
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgg 1214
||||||| ||||||||||||||
Sbjct: 646 gaggcgggggcggcggcggcgg 625
>gb|DR163199.1|DR163199 RTFE1_41_B08.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_41_B08_A029 5', mRNA sequence
Length = 849
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgg 1214
||||||| ||||||||||||||
Sbjct: 637 gaggcgggggcggcggcggcgg 616
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,329
Number of Sequences: 355925
Number of extensions: 143329
Number of successful extensions: 38086
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37868
Number of HSP's gapped (non-prelim): 186
length of query: 1516
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1497
effective length of database: 210,514,662
effective search space: 315140449014
effective search space used: 315140449014
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)