BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCN28g01.yg.2.1
         (513 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF392295.1|CF392295  RTDR3_7_H04.b1_A022 Loblolly pine ro...    38   0.34 

>gb|CF392295.1|CF392295 RTDR3_7_H04.b1_A022 Loblolly pine roots recovering from drought DR3
           Pinus taeda cDNA clone RTDR3_7_H04_A022 3', mRNA
           sequence
          Length = 630

 Score = 38.2 bits (19), Expect = 0.34
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 97  ttggtacatcatccctctt 115
           |||||||||||||||||||
Sbjct: 353 ttggtacatcatccctctt 335



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,012
Number of Sequences: 355925
Number of extensions: 64012
Number of successful extensions: 16792
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16791
Number of HSP's gapped (non-prelim): 1
length of query: 513
length of database: 217,277,237
effective HSP length: 19
effective length of query: 494
effective length of database: 210,514,662
effective search space: 103994243028
effective search space used: 103994243028
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)