BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCM12h10.yg.2.1
         (339 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BG317521.1|BG317521  NXPV_002_G06_F NXPV (Nsf Xylem Plani...    46   0.001

>gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_002_G06 5' similar to Arabidopsis
           thaliana sequence At5g13000 callose synthase catalytic
           subunit -like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 421

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 228 acaacaaaaccacgnnnagtagcacggtattttgcaccaccatg 271
           ||||||||||||||   |||||| | ||||||||| ||||||||
Sbjct: 101 acaacaaaaccacgcccagtagctctgtattttgctccaccatg 58



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,620
Number of Sequences: 355925
Number of extensions: 32620
Number of successful extensions: 7869
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7868
Number of HSP's gapped (non-prelim): 1
length of query: 339
length of database: 217,277,237
effective HSP length: 18
effective length of query: 321
effective length of database: 210,870,587
effective search space: 67689458427
effective search space used: 67689458427
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)