BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK13d03.yg.3.1
(2611 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR056330.1|DR056330 RTCA1_29_C09.g1_A029 Roots minus cal... 105 9e-021
gb|DR683953.1|DR683953 EST1074029 Normalized pine embryo li... 103 4e-020
gb|DT631864.1|DT631864 EST1146795 Normalized pine embryo li... 103 4e-020
gb|DR013884.1|DR013884 HEAT1_22_D06.b1_A029 Root at 37 C fo... 96 9e-018
dbj|BD224352.1| Materials and methods for the modification ... 96 9e-018
dbj|BD224415.1| Materials and methods for the modification ... 96 9e-018
gb|DR018410.1|DR018410 STRS1_22_G03.g1_A034 Shoot tip pitch... 52 1e-004
gb|DR068751.1|DR068751 RTDK1_2_E04.g1_A029 Roots, dark Pinu... 52 1e-004
gb|DR694469.1|DR694469 EST1084561 Normalized pine embryo li... 42 0.11
gb|DT638708.1|DT638708 EST1153639 Normalized pine embryo li... 42 0.11
gb|BX784323.1|BX784323 BX784323 Pinus pinaster differenciat... 40 0.45
>gb|DR056330.1|DR056330 RTCA1_29_C09.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_29_C09_A029 5', mRNA sequence
Length = 604
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 734 gatgcagtgcatgggcacaacaacgtctacaaagctactattttccctcacaacgtcggg 793
||||| |||||||| ||||| || ||||| ||||| || ||||||||||| || |||
Sbjct: 347 gatgctgtgcatggccacaataatgtctatggggctaccatcttccctcacaatgttggg 406
Query: 794 cttggagctaccagggaccctgacctcgttaagagaattggagaagcaactgctcttgaa 853
|||||||||||||| || ||||| | | || |||||||||| || || ||| | |||
Sbjct: 407 cttggagctaccagagatcctgatttggctagaagaattggagctgctacagctttggaa 466
Query: 854 gttagagctactggaattccttacgcctttgctccctgtatagcggtctgtagagatcca 913
|||||||||||||| |||| |||| |||||||| ||| | || || || ||||||||
Sbjct: 467 gttagagctactggcattcaatacgtgtttgctccgtgtgttgctgtttgcagagatcct 526
Query: 914 agatggggacgctgctatgagagctacagtgaggatccaaa 954
||||||| ||||||||||||||||| || |||||||||||
Sbjct: 527 cgatggggccgctgctatgagagctatagcgaggatccaaa 567
>gb|DR683953.1|DR683953 EST1074029 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAN27 3' end, mRNA sequence
Length = 896
Score = 103 bits (52), Expect = 4e-020
Identities = 154/188 (81%)
Strand = Plus / Plus
Query: 767 gctactattttccctcacaacgtcgggcttggagctaccagggaccctgacctcgttaag 826
||||| || ||||||||||| || ||||||||||||||||| || ||||| | | ||
Sbjct: 456 gctaccatcttccctcacaatgttgggcttggagctaccagagatcctgatttggctaga 515
Query: 827 agaattggagaagcaactgctcttgaagttagagctactggaattccttacgcctttgct 886
|||||||||| || || ||| | ||||||||||||||||| |||| |||| ||||||
Sbjct: 516 agaattggagctgctacagctttggaagttagagctactggcattcaatacgtgtttgct 575
Query: 887 ccctgtatagcggtctgtagagatccaagatggggacgctgctatgagagctacagtgag 946
|| ||| | || || || |||||||| ||||||| ||||||||||||||||| || |||
Sbjct: 576 ccgtgtgttgctgtttgcagagatcctcgatggggccgctgctatgagagctatagcgag 635
Query: 947 gatccaaa 954
||||||||
Sbjct: 636 gatccaaa 643
>gb|DT631864.1|DT631864 EST1146795 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD63 3' end, mRNA sequence
Length = 822
Score = 103 bits (52), Expect = 4e-020
Identities = 154/188 (81%)
Strand = Plus / Plus
Query: 767 gctactattttccctcacaacgtcgggcttggagctaccagggaccctgacctcgttaag 826
||||| || ||||||||||| || ||||||||||||||||| || ||||| | | ||
Sbjct: 464 gctaccatcttccctcacaatgttgggcttggagctaccagagatcctgatttggctaga 523
Query: 827 agaattggagaagcaactgctcttgaagttagagctactggaattccttacgcctttgct 886
|||||||||| || || ||| | ||||||||||||||||| |||| |||| ||||||
Sbjct: 524 agaattggagctgctacagctttggaagttagagctactggcattcaatacgtgtttgct 583
Query: 887 ccctgtatagcggtctgtagagatccaagatggggacgctgctatgagagctacagtgag 946
|| ||| | || || || |||||||| ||||||| ||||||||||||||||| || |||
Sbjct: 584 ccgtgtgttgctgtttgcagagatcctcgatggggccgctgctatgagagctatagcgag 643
Query: 947 gatccaaa 954
||||||||
Sbjct: 644 gatccaaa 651
>gb|DR013884.1|DR013884 HEAT1_22_D06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_D06_A029 3', mRNA sequence
Length = 658
Score = 95.6 bits (48), Expect = 9e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 791 gggcttggagctaccagggaccctgacctcgttaagagaattggagaagcaactgctctt 850
|||||||||||||||||||| ||||| || | || ||||| || | || || ||| |
Sbjct: 203 gggcttggagctaccagggatcctgatctggctagaagaataggggctgctacggctttg 144
Query: 851 gaagttagagctactggaattccttacgcctttgctccctgtatagcggtctgtagagat 910
|||||| |||||||||| |||| ||| | |||||||| ||| | || || || ||||||
Sbjct: 143 gaagttcgagctactggcattcaatacacatttgctccatgtgttgctgtttgcagagat 84
Query: 911 ccaagatggggacgctgctatgagagctacagtgaggatccaaa 954
|| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 83 cctcgatggggccgctgctatgagagctacagtgaggatccaaa 40
>dbj|BD224352.1| Materials and methods for the modification of plant lignin content
Length = 435
Score = 95.6 bits (48), Expect = 9e-018
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 791 gggcttggagctaccagggaccctgacctcgttaagagaattggagaagcaactgctctt 850
|||||||||||||||||||| ||||| || | || ||||| || | || || ||| |
Sbjct: 56 gggcttggagctaccagggatcctgatctggctagaagaataggggctgctacggctttg 115
Query: 851 gaagttagagctactggaattccttacgcctttgctccctgtatagcggtctgtagagat 910
|||||| |||||||||| |||| ||| | |||||||| ||| | || || || ||||||
Sbjct: 116 gaagttcgagctactggcattcaatacacatttgctccatgtgttgctgtttgcagagat 175
Query: 911 ccaagatggggacgctgctatgagagctacagtgaggatccaaa 954
|| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 176 cctcgatggggccgctgctatgagagctacagtgaggatccaaa 219
>dbj|BD224415.1| Materials and methods for the modification of plant lignin content
Length = 404
Score = 95.6 bits (48), Expect = 9e-018
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 791 gggcttggagctaccagggaccctgacctcgttaagagaattggagaagcaactgctctt 850
|||||||||||||||||||| ||||| || | || ||||| || | || || ||| |
Sbjct: 25 gggcttggagctaccagggatcctgatctggctagaagaataggggctgctacggctttg 84
Query: 851 gaagttagagctactggaattccttacgcctttgctccctgtatagcggtctgtagagat 910
|||||| |||||||||| |||| ||| | |||||||| ||| | || || || ||||||
Sbjct: 85 gaagttcgagctactggcattcaatacacatttgctccatgtgttgctgtttgcagagat 144
Query: 911 ccaagatggggacgctgctatgagagctacagtgaggatccaaa 954
|| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 145 cctcgatggggccgctgctatgagagctacagtgaggatccaaa 188
>gb|DR018410.1|DR018410 STRS1_22_G03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_G03_A034 5', mRNA sequence
Length = 747
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1196 atggtctcctactccagctggaacggagtgaagatgca 1233
||||| ||||| || |||||||||||||||||||||||
Sbjct: 16 atggtgtcctattcaagctggaacggagtgaagatgca 53
>gb|DR068751.1|DR068751 RTDK1_2_E04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_2_E04_A029 5', mRNA sequence
Length = 780
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1196 atggtctcctactccagctggaacggagtgaagatgca 1233
||||| ||||| || |||||||||||||||||||||||
Sbjct: 155 atggtgtcctattcaagctggaacggagtgaagatgca 192
>gb|DR694469.1|DR694469 EST1084561 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC87 3' end, mRNA sequence
Length = 838
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1205 tactccagctggaacggagtgaagatgca 1233
||||| ||||||||||||||||| |||||
Sbjct: 130 tactcgagctggaacggagtgaaaatgca 158
>gb|DT638708.1|DT638708 EST1153639 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI44 3' end, mRNA sequence
Length = 865
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1205 tactccagctggaacggagtgaagatgca 1233
||||| ||||||||||||||||| |||||
Sbjct: 138 tactcgagctggaacggagtgaaaatgca 166
>gb|BX784323.1|BX784323 BX784323 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132E10 similar to Calcium-binding EF hand
protein, mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2408 tgcgtctgggtaataacagtgatg 2431
||||| ||||||||||||||||||
Sbjct: 389 tgcgtatgggtaataacagtgatg 366
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 226,594
Number of Sequences: 355925
Number of extensions: 226594
Number of successful extensions: 68673
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68638
Number of HSP's gapped (non-prelim): 32
length of query: 2611
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2591
effective length of database: 210,158,737
effective search space: 544521287567
effective search space used: 544521287567
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)