BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library P... 48 2e-004
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 48 2e-004
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 48 2e-004
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 48 2e-004
gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciat... 48 2e-004
gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood... 48 2e-004
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 48 2e-004
gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compr... 48 2e-004
gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side ... 48 2e-004
gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side ... 48 2e-004
gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side ... 48 2e-004
gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side ... 48 2e-004
gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side ... 48 2e-004
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 48 2e-004
gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side ... 48 2e-004
gb|CD026006.1|CD026006 NXSI_094_B11_F NXSI (Nsf Xylem Side ... 48 2e-004
gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control P... 48 2e-004
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 48 2e-004
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 48 2e-004
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 48 2e-004
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 48 2e-004
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 48 2e-004
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 48 2e-004
gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side ... 46 8e-004
gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciat... 44 0.003
gb|BE656835.1|BE656835 NXCI_040_B06_F NXCI (Nsf Xylem Compr... 44 0.003
gb|BF010934.1|BF010934 NXCI_094_H06_F NXCI (Nsf Xylem Compr... 44 0.003
gb|AW042872.1|AW042872 ST26D09 Pine TriplEx shoot tip libra... 42 0.012
gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Plani... 42 0.012
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 42 0.012
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 42 0.012
gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo li... 42 0.012
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 42 0.012
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 42 0.012
gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Ve... 38 0.18
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 38 0.18
gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side ... 38 0.18
gb|BF610612.1|BF610612 NXSI_060_G02_F NXSI (Nsf Xylem Side ... 38 0.18
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 38 0.18
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 38 0.18
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 38 0.18
gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Ver... 38 0.18
dbj|BD236020.1| Materials and method for modification of pl... 38 0.18
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 38 0.18
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 38 0.18
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 38 0.18
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 38 0.18
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 38 0.18
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 38 0.18
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 38 0.18
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 38 0.18
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 38 0.18
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 38 0.18
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 38 0.18
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 38 0.18
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 38 0.18
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 38 0.18
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 38 0.18
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 38 0.18
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 38 0.18
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 38 0.18
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 38 0.18
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 38 0.18
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 38 0.18
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 38 0.18
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 38 0.18
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 38 0.18
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 38 0.18
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 38 0.18
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 38 0.18
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 38 0.18
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 38 0.18
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 38 0.18
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 38 0.18
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 38 0.18
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 38 0.18
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 38 0.18
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 38 0.18
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 38 0.18
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 38 0.18
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 38 0.18
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 38 0.18
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 38 0.18
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 38 0.18
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 38 0.18
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 38 0.18
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 38 0.18
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 38 0.18
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 38 0.18
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 38 0.18
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 38 0.18
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 38 0.18
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 38 0.18
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 38 0.18
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 38 0.18
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 38 0.18
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 38 0.18
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 38 0.18
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 38 0.18
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 38 0.18
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 38 0.18
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 38 0.18
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 38 0.18
gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose s... 38 0.18
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 38 0.18
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 38 0.18
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 38 0.18
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 38 0.18
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 38 0.18
>gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 399
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 246 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 293
>gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026B12, mRNA sequence
Length = 685
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 417 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 464
>gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092C09, mRNA sequence
Length = 690
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 366 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 413
>gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099B08, mRNA sequence
Length = 707
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 79 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 126
>gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP108A02, mRNA sequence
Length = 673
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 17 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 64
>gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_072_F12 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 386
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 245 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 292
>gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_147_C08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 516
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 245 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 292
>gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_016_G11 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 393
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 153 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 200
>gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_046_C11 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 453
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 30 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 77
>gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_056_B10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 352
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 89 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 136
>gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_F10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 493
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 220 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 267
>gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_108_H05 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 544
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 30 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 77
>gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_138_C06 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 450
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 30 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 77
>gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_A10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 518
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 220 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 267
>gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_D04 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 664
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 418 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 465
>gb|CD026006.1|CD026006 NXSI_094_B11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_094_B11 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 184
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 89 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 136
>gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_20_E07_A029 5', mRNA sequence
Length = 410
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 280 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 327
>gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_1_A02_A029 5', mRNA sequence
Length = 662
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 249 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 296
>gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_F09_A029 5', mRNA sequence
Length = 802
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 635 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 682
>gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_H07_A029 5', mRNA sequence
Length = 853
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 658 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 705
>gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_17_D10_A029 3', mRNA sequence
Length = 821
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 74 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 27
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 2619 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 2666
>gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRNA, partial cds
Length = 1333
Score = 48.1 bits (24), Expect = 2e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 119 agacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
||||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 636 agacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 683
>gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_058_H08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 378
Score = 46.1 bits (23), Expect = 8e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 120 gacgacgaggagttctcagagctctacacattcaaatggacgaccct 166
|||||| | |||||| |||||| ||| |||||||||||||||||||
Sbjct: 267 gacgacaatgagttcggagagctgtacgcattcaaatggacgaccct 313
>gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP004G04, mRNA sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.003
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 137 agagctctacacattcaaatggacgaccct 166
|||||| ||| |||||||||||||||||||
Sbjct: 552 agagctgtacgcattcaaatggacgaccct 523
>gb|BE656835.1|BE656835 NXCI_040_B06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_040_B06 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 209
Score = 44.1 bits (22), Expect = 0.003
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 137 agagctctacacattcaaatggacgaccct 166
|||||| ||| |||||||||||||||||||
Sbjct: 174 agagctgtacgcattcaaatggacgaccct 203
>gb|BF010934.1|BF010934 NXCI_094_H06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_094_H06 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 252
Score = 44.1 bits (22), Expect = 0.003
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 137 agagctctacacattcaaatggacgaccct 166
|||||| ||| |||||||||||||||||||
Sbjct: 174 agagctgtacgcattcaaatggacgaccct 203
>gb|AW042872.1|AW042872 ST26D09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST26D09, mRNA sequence
Length = 569
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 243 ggatatgaatcatggggccccctgttcgg 271
|||||||| ||||||||||| ||||||||
Sbjct: 236 ggatatgagtcatggggccctctgttcgg 264
>gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_069_F11 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 497
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 243 ggatatgaatcatggggccccctgttcgg 271
|||||||| ||||||||||| ||||||||
Sbjct: 87 ggatatgagtcatggggccctctgttcgg 115
>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY38 3' end, mRNA sequence
Length = 859
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 243 ggatatgaatcatggggccccctgttcgg 271
|||||||| ||||||||||| ||||||||
Sbjct: 385 ggatatgagtcatggggccctctgttcgg 413
>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM78 3' end, mRNA sequence
Length = 740
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 243 ggatatgaatcatggggccccctgttcgg 271
|||||||| ||||||||||| ||||||||
Sbjct: 480 ggatatgagtcatggggccctctgttcgg 508
>gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH43 3' end, mRNA sequence
Length = 770
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 243 ggatatgaatcatggggccccctgttcgg 271
|||||||| ||||||||||| ||||||||
Sbjct: 140 ggatatgagtcatggggccctctgttcgg 168
>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL85 3' end, mRNA sequence
Length = 771
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 243 ggatatgaatcatggggccccctgttcgg 271
|||||||| ||||||||||| ||||||||
Sbjct: 393 ggatatgagtcatggggccctctgttcgg 421
>gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFZ11 3' end, mRNA sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 243 ggatatgaatcatggggccccctgttcgg 271
|||||||| ||||||||||| ||||||||
Sbjct: 488 ggatatgagtcatggggccctctgttcgg 516
>gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044E04 5', mRNA sequence
Length = 327
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 167 cattcaaatggaccacactcctcattcctcctacaaccctgct 209
>gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034A11, mRNA sequence
Length = 689
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 614 cattcaaatggaccacactcctcattcctcctacaaccctgct 656
>gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_040_H08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 516
Score = 38.2 bits (19), Expect = 0.18
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgaccct 166
|||||||||||||||||||
Sbjct: 24 cattcaaatggacgaccct 42
>gb|BF610612.1|BF610612 NXSI_060_G02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_060_G02 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 229
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 57 cattcaaatggaccacactcctcattcctcctacaaccctgct 99
>gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_102_H08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 546
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 21 cattcaaatggaccacactcctcattcctcctacaaccctgct 63
>gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_F11 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 439
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 327 cattcaaatggaccacactcctcattcctcctacaaccctgct 369
>gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_136_D09 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 483
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 3 cattcaaatggaccacactcctcattcctcctacaaccctgct 45
>gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044E04 5' similar to Arabidopsis thaliana sequence
At5g17420 cellulose synthase catalytic subunit (IRX3)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 327
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 167 cattcaaatggaccacactcctcattcctcctacaaccctgct 209
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 3079 cattcaaatggaccacactcctcattcctcctacaaccctgct 3121
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 3095 cattcaaatggaccacactcctcattcctcctacaaccctgct 3137
>gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulose synthase genes, partial cds
Length = 1023
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 627 cattcaaatggaccacactcctcattcctcctacaaccctgct 669
>gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose synthase gene, partial cds
Length = 452
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 56 cattcaaatggaccacactcctcattcctcctacaaccctgct 98
>gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulose synthase genes, partial cds
Length = 1023
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 627 cattcaaatggaccacactcctcattcctcctacaaccctgct 669
>gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose synthase gene, partial cds
Length = 452
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 56 cattcaaatggaccacactcctcattcctcctacaaccctgct 98
>gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulose synthase genes, partial cds
Length = 1023
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 627 cattcaaatggaccacactcctcattcctcctacaaccctgct 669
>gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose synthase gene, partial cds
Length = 452
Score = 38.2 bits (19), Expect = 0.18
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgct 190
||||||||||||| || || || || ||||| |||||||||||
Sbjct: 56 cattcaaatggaccacactcctcattcctcctacaaccctgct 98
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,989
Number of Sequences: 355925
Number of extensions: 28989
Number of successful extensions: 6635
Number of sequences better than 0.5: 109
Number of HSP's better than 0.5 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6526
Number of HSP's gapped (non-prelim): 109
length of query: 286
length of database: 217,277,237
effective HSP length: 18
effective length of query: 268
effective length of database: 210,870,587
effective search space: 56513317316
effective search space used: 56513317316
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)