BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH10g11.yg.2.1
         (632 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR388038.1|DR388038  RTHG1_25_F10.g1_A029 Roots plus adde...    42   0.027

>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_25_F10_A029 5', mRNA sequence
          Length = 753

 Score = 42.1 bits (21), Expect = 0.027
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 89  tcaaaaacatctgggtggccataatgcat 117
           ||||||||||||||||| ||||| |||||
Sbjct: 47  tcaaaaacatctgggtgaccatagtgcat 19



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,621
Number of Sequences: 355925
Number of extensions: 72621
Number of successful extensions: 19329
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19328
Number of HSP's gapped (non-prelim): 1
length of query: 632
length of database: 217,277,237
effective HSP length: 19
effective length of query: 613
effective length of database: 210,514,662
effective search space: 129045487806
effective search space used: 129045487806
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)