BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG38e04.yg.2.1
(690 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pin... 149 2e-034
gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pin... 149 2e-034
gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Plani... 131 4e-029
gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clon... 129 2e-028
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 48 5e-004
gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Plani... 38 0.46
gb|DR117540.1|DR117540 RTMG1_7_C10.g1_A029 Roots minus magn... 38 0.46
>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 5', mRNA sequence
Length = 796
Score = 149 bits (75), Expect = 2e-034
Identities = 120/135 (88%)
Strand = Plus / Minus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||
Sbjct: 446 cacaccaatacctccacggttgttgatccacttgttccaatccgtccagtcatccacaat 387
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| |||||||| ||||||||||||||||||||||| || ||||| ||||| | || ||
Sbjct: 386 tttttgccactcgaatccagaaggattgaacaggaaaggagcaaatagccatgccccaac 327
Query: 210 catgaaccacatgga 224
||| |||||||||||
Sbjct: 326 cataaaccacatgga 312
Score = 54.0 bits (27), Expect = 8e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 313 ttgacaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacacc 372
|||||||| |||||||| ||||| | || ||||| || ||||| || ||||| || ||
Sbjct: 223 ttgacaaagtggctgcgtgaatagaagcggtagttttctgcaaacttcgcatgaaagaca 164
Query: 373 acaaacccacgtccagtggctctgtattccgctcctccatggagtaa 419
||||| ||||| ||||| ||||||||| ||||||||||| |||||
Sbjct: 163 acaaatccacgcccagtacctctgtattttgctcctccatgaagtaa 117
>gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 5', mRNA sequence
Length = 607
Score = 149 bits (75), Expect = 2e-034
Identities = 120/135 (88%)
Strand = Plus / Minus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||
Sbjct: 222 cacaccaatacctccacggttgttgatccacttgttccaatccgtccagtcatccacaat 163
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| |||||||| ||||||||||||||||||||||| || ||||| ||||| | || ||
Sbjct: 162 tttttgccactcgaatccagaaggattgaacaggaaaggagcaaatagccatgccccaac 103
Query: 210 catgaaccacatgga 224
||| |||||||||||
Sbjct: 102 cataaaccacatgga 88
>gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_G06 5' similar to Arabidopsis
thaliana sequence At5g13000 callose synthase catalytic
subunit -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 421
Score = 131 bits (66), Expect = 4e-029
Identities = 117/135 (86%)
Strand = Plus / Minus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||| ||||| | || | ||||||||| |||||| ||||||||||| |||||
Sbjct: 381 cacaccaatanctccatggctgttnntccacttgttccaatctgtccagtcatctacaat 322
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||||||||||||||| |||||||| |||||||||||||| || || ||
Sbjct: 321 tttttgccactcaaatccagaaggattaaacaggaaaggtgcaaagagccacgtcccgac 262
Query: 210 catgaaccacatgga 224
||| |||||||||||
Sbjct: 261 cataaaccacatgga 247
Score = 79.8 bits (40), Expect = 1e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 297 catcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctcagcaaa 356
||||| |||||| || |||||||| || ||||| || |||| || ||||| || |||||
Sbjct: 174 catcaactcaagtcctttgacaaagtgactgcgtgagtaaaagcggtagttatccgcaaa 115
Query: 357 tttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctccatggag 416
|||||||| || || ||||| ||||| ||||| |||||||||| ||||| ||||||||
Sbjct: 114 cttggcatgaaagacaacaaaaccacgcccagtagctctgtattttgctccaccatggag 55
Query: 417 taacgtcc 424
||||||||
Sbjct: 54 taacgtcc 47
>gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clone RN03D12 similar to GLUCAN
(CALLOSE) SYNTHASE, mRNA sequence
Length = 378
Score = 129 bits (65), Expect = 2e-028
Identities = 116/133 (87%)
Strand = Plus / Minus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||||||| | || |||||||||||| |||||| ||||||||||| |||||
Sbjct: 166 cacaccaatacctccatggctgttgatccacttgttccaatctgtccagtcatctacaat 107
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| |||||||||||||| |||||||| |||||||| |||||||| ||||| || || ||
Sbjct: 106 tttttgccactcaaatcctgaaggattaaacaggaaaggtgcaaatagccacgtcccgac 47
Query: 210 catgaaccacatg 222
||| |||||||||
Sbjct: 46 cataaaccacatg 34
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 48.1 bits (24), Expect = 5e-004
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 49 tgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacctccacga 108
||||| ||||||||||| || ||||| ||||| || || || ||||| |||||||||
Sbjct: 95 tgctccttttcccaccaagattcccaacttttatccactggtacnccaatccctccacga 36
Query: 109 ttgctgatccacttgtgccaatc 131
||| | |||||||||| ||||||
Sbjct: 35 ttgttaatccacttgttccaatc 13
>gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_047_C11 5' similar to Arabidopsis
thaliana sequence At5g13000 callose synthase catalytic
subunit -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 601
Score = 38.2 bits (19), Expect = 0.46
Identities = 64/79 (81%)
Strand = Plus / Minus
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagt 495
||||| ||||| |||| ||||||||||| || |||||||| | || |||||||| |
Sbjct: 303 tgagtctttgtacccagagagaatgtgaaaaagacagaggcaagttgcagctgcataata 244
Query: 496 ataaaatcactcaatgcag 514
| ||||||||| |||||||
Sbjct: 243 acaaaatcacttaatgcag 225
>gb|DR117540.1|DR117540 RTMG1_7_C10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_C10_A029 5', mRNA sequence
Length = 894
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 515 ttctgaatcctctctccaa 533
|||||||||||||||||||
Sbjct: 135 ttctgaatcctctctccaa 117
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,269
Number of Sequences: 355925
Number of extensions: 75269
Number of successful extensions: 19518
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19508
Number of HSP's gapped (non-prelim): 9
length of query: 690
length of database: 217,277,237
effective HSP length: 19
effective length of query: 671
effective length of database: 210,514,662
effective search space: 141255338202
effective search space used: 141255338202
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)